Jérémie Scire

Publication Activity (10 Years)

Years Active: 2019-2023
Publications (10 Years): 7

Top Topics

Coronavirus Disease

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

PLoS computational biology

BMC bioinformatics

Environmental health perspectives

This page only lists publications with an associated author ORCID identifier.

Publications

Claire Guinat, Hao Tang, Qiqi Yang, Cecilia Valenzuela Agüí, Timothy G Vaughan, Jérémie Scire, Hongjie Yu, Wei Wang, Zhiyuan Chen, Mariette F Ducatez, Tanja Stadler
Bayesian phylodynamics reveals the transmission dynamics of avian influenza A(H7N9) virus at the human-live bird market interface in China. Proceedings of the National Academy of Sciences of the United States of America 120 (17) (2023)
Jérémie Scire, Jana S Huisman, Ana Grosu, Daniel C Angst, Adrian Lison, Jinzhou Li, Marloes H Maathuis, Sebastian Bonhoeffer, Tanja Stadler
estimateR: an R package to estimate and monitor the effective reproductive number. BMC bioinformatics 24 (1) (2023)
Jérémie Scire, Joëlle Barido-Sottani, Denise Kühnert, Timothy G Vaughan, Tanja Stadler
Robust Phylodynamic Analysis of Genetic Sequencing Data from Structured Populations. Viruses 14 (8) (2022)
Jana Sanne Huisman, Jérémie Scire, Lea Caduff, Xavier Fernandez-Cassi, Pravin Ganesanandamoorthy, Anina Kull, Andreas Scheidegger, Elyse Stachler, Alexandria B Boehm, Bridgette Hughes, Alisha Knudson, Aaron Topol, Krista R Wigginton, Marlene K Wolfe, Tamar Kohn, Christoph Ort, Tanja Stadler, Timothy R Julian
Wastewater-Based Estimation of the Effective Reproductive Number of SARS-CoV-2. Environmental health perspectives 130 (5) (2022)
Sarah A Nadeau, Timothy G Vaughan, Jérémie Scire, Jana Sanne Huisman, Tanja Stadler
The origin and early spread of SARS-CoV-2 in Europe. Proceedings of the National Academy of Sciences of the United States of America 118 (9) (2021)
Katelyn M Gostic, Lauren McGough, Edward B Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A Hay, Pablo De Salazar, Joel Hellewell, Sophie Meakin, James D Munday, Nikos I Bosse, Katharine Sherrat, Robin N Thompson, Laura F White, Jana Sanne Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah E Cobey
Practical considerations for measuring the effective reproductive number, Rt. PLoS computational biology 16 (12) (2020)
Jérémie Scire, Nathanaël Hozé, Hildegard Uecker
Aggressive or moderate drug therapy for infectious diseases? Trade-offs between different treatment goals at the individual and population levels. PLoS computational biology 15 (8) (2019)