James A Hay (J A Hay)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 24

Top Topics

Coronavirus Disease

Angiotensin Converting Enzyme

Top Venues

medRxiv : the preprint server for health sciences

PLoS computational biology

Science advances

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

James A Hay, Huachen Zhu, Chao Qiang Jiang, Kin On On Kwok, Ruiyin Shen, Adam J Kucharski, Bingyi Yang, Jonathan M Read, Justin Lessler, Derek A T Cummings, Steven Riley
Reconstructed influenza A/H3N2 infection histories reveal variation in incidence and antibody dynamics over the life course. medRxiv : the preprint server for health sciences (2024)
James A Hay, Huachen Zhu, Chao Qiang Jiang, Kin On On Kwok, Ruiyin Shen, Adam J Kucharski, Bingyi Yang, Jonathan M Read, Justin Lessler, Derek A T Cummings, Steven Riley
Reconstructed influenza A/H3N2 infection histories reveal variation in incidence and antibody dynamics over the life course. medRxiv : the preprint server for health sciences (2024)
James A Hay, Huachen Zhu, Chao Qiang Jiang, Kin On On Kwok, Ruiyin Shen, Adam J Kucharski, Bingyi Yang, Jonathan M Read, Justin Lessler, Derek A T Cummings, Steven Riley
Reconstructed influenza A/H3N2 infection histories reveal variation in incidence and antibody dynamics over the life course. medRxiv : the preprint server for health sciences (2024)
James A Hay, Huachen Zhu, Chao Qiang Jiang, Kin On On Kwok, Ruiyin Shen, Adam J Kucharski, Bingyi Yang, Jonathan M Read, Justin Lessler, Derek A T Cummings, Steven Riley
Reconstructed influenza A/H3N2 infection histories reveal variation in incidence and antibody dynamics over the life course. medRxiv : the preprint server for health sciences (2024)
James A Hay, Huachen Zhu, Chao Qiang Jiang, Kin On On Kwok, Ruiyin Shen, Adam J Kucharski, Bingyi Yang, Jonathan M Read, Justin Lessler, Derek A T Cummings, Steven Riley
Reconstructed influenza A/H3N2 infection histories reveal variation in incidence and antibody dynamics over the life course. medRxiv : the preprint server for health sciences (2024)
James A Hay, Huachen Zhu, Chao Qiang Jiang, Kin On On Kwok, Ruiyin Shen, Adam J Kucharski, Bingyi Yang, Jonathan M Read, Justin Lessler, Derek A T Cummings, Steven Riley
Reconstructed influenza A/H3N2 infection histories reveal variation in incidence and antibody dynamics over the life course. medRxiv : the preprint server for health sciences (2024)
James A Hay, Huachen Zhu, Chao Qiang Jiang, Kin On On Kwok, Ruiyin Shen, Adam J Kucharski, Bingyi Yang, Jonathan M Read, Justin Lessler, Derek A T Cummings, Steven Riley
Reconstructed influenza A/H3N2 infection histories reveal variation in incidence and antibody dynamics over the life course. medRxiv : the preprint server for health sciences (2024)
Ruth McCabe, Charles Whittaker, Richard J Sheppard, Nada Abdelmagid, Aljaile Ahmed, Israa Zain Alabdeen, Nicholas F Brazeau, Abd Elhameed Ahmed Abd Elhameed, Abdulla Salem Bin-Ghouth, Arran Hamlet, Rahaf AbuKoura, Gregory Barnsley, James A Hay, Mervat Alhaffar, Emilie Sabine Koum-Besson, Semira Mitiku Saje, Binyam Girma Sisay, Seifu Hagos Gebreyesus, Adane Petros Sikamo, Aschalew Worku, Yakob Seman Ahmed, Damen Haile Mariam, Mitike Molla Sisay, Francesco Checchi, Maysoon Dahab, Bilal Shikur Endris, Azra C Ghani, Patrick G T Walker, Christl Ann Donnelly, Oliver John Watson
Alternative epidemic indicators for COVID-19 in three settings with incomplete death registration systems. Science advances 9 (23) (2023)
Arthur Menezes, Saki Takahashi, Isobel Routledge, C Jessica E Metcalf, Andrea L Graham, James A Hay
serosim: An R package for simulating serological data arising from vaccination, epidemiological and antibody kinetics processes. PLoS computational biology 19 (8) (2023)
Stephen M Kissler, James A Hay, Joseph R Fauver, Christina Mack, Caroline G Tai, Deverick J Anderson, David D Ho, Nathan D Grubaugh, Yonatan Hagai Grad
Viral kinetics of sequential SARS-CoV-2 infections. Nature communications 14 (1) (2023)
Pablo De Salazar, Fred Sun Lu, James A Hay, Gómez-Barroso Diana, Pablo Fernandez-Navarro, Elena V Martínez, Jenaro Astray-Mochales, Rocío Amillategui, Ana García-Fulgueiras, Maria D Chirlaque, Alonso Sánchez-Migallón, Larrauri Amparo, María J Sierra, Marc Lipsitch, Fernando Simón, Mauricio Santillana, Miguel A Hernán
Near real-time surveillance of the SARS-CoV-2 epidemic with incomplete data. PLoS computational biology 18 (3) (2022)
James A Hay, Stephen M Kissler, Joseph R Fauver, Christina Mack, Caroline G Tai, Radhika M Samant, Sarah Connolly, Deverick J Anderson, Gaurav Khullar, Matthew MacKay, Miral Patel, Shannan Kelly, April Manhertz, Isaac Eiter, Daisy Salgado, Tim Baker, Ben Howard, Joel T Dudley, Christopher E Mason, Manoj S Nair, Yaoxing Huang, John DiFiori, David D Ho, Nathan D Grubaugh, Yonatan Hagai Grad
Quantifying the impact of immune history and variant on SARS-CoV-2 viral kinetics and infection rebound: A retrospective cohort study. eLife 11 (2022)
Bingyi Yang, Bernardo García-Carreras, Justin Lessler, Jonathan M Read, Huachen Zhu, Charlotte Jessica E Metcalf, James A Hay, Kin O Kwok, Ruiyun Shen, Chao Q Jiang, Yi Guan, Steven Riley, Derek A Cummings
Long term intrinsic cycling in human life course antibody responses to influenza A(H3N2): an observational and modelling study. eLife 11 (2022)
Nuno Rodrigues Faria, Thomas A Mellan, Charles Whittaker, Ingra Morales Claro, Darlan da Silva Candido, Swapnil Mishra, Myuki A E Crispim, Flávia Cristina Silva Sales, Iwona Hawryluk, John T McCrone, Ruben J G Hulswit, Lucas Augusto Moysés Franco, Mariana Severo Ramundo, Jaqueline Góes de Jesus, Pamela Dos Santos Andrade, Thaís de Moura Coletti, Giulia M Ferreira, Camila Alves Maia da Silva, Erika Regina Manuli, Rafael Henrique Moraes Pereira, Pedro S Peixoto, Moritz U G Kraemer, Nelson Gaburo-Júnior, Cecilia da C Camilo, Henrique H Hoeltgebaum, William Marciel de Souza, Esmenia C Rocha, Leandro Menezes de Souza, Mariana C de Pinho, Leonardo José Tadeu de Araújo, Frederico Scott Varella Malta, Aline Brito de Lima, Joice do Prado Silva, Danielle A G Zauli, Alessandro C de S Ferreira, Ricardo P Schnekenberg, Daniel J Laydon, Patrick G T Walker, Hannah M Schlüter, Ana L P Dos Santos, Maria S Vidal, Valentina S Del Caro, Rosinaldo M F Filho, Helem M Dos Santos, Renato Santana de Aguiar, José Luis Proença Modena, Bruce Walker Nelson, James A Hay, Mélodie Monod, Xenia Miscouridou, Helen Coupland, Raphael Sonabend, Michaela A C Vollmer, Axel Gandy, Carlos Augusto Prete Junior, Vítor Heloiz Nascimento, Marc A Suchard, Thomas A Bowden, Sergei L K Pond, Chieh-Hsi Wu, Oliver Ratmann, Neil M Ferguson, Christopher Dye, Nicholas James Loman, Philippe Lemey, Andrew Rambaut, Nelson A Fraiji, Maria do P S S Carvalho, Oliver George Pybus, Seth R Flaxman, Samir Bhatt, Ester Cerdeira Sabino
Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil. Science (New York, N.Y.) 372 (6544) (2021)
Tigist F Menkir, Taylor Chin, James A Hay, Erik D Surface, Pablo De Salazar, Caroline O Buckee, Alexander Watts, Kamran Khan, Ryan Sherbo, Ada W C Yan, Michael J Mina, Marc Lipsitch, Rene Niehus
Estimating internationally imported cases during the early COVID-19 pandemic. Nature communications 12 (1) (2021)
Pablo De Salazar, F Lu, James A Hay, D Gómez-Barroso, P Fernández-Navarro, E Martínez, J Astray-Mochales, R Amillategui, A García-Fulgueiras, M D Chirlaque, A Sánchez-Migallón, A Larrauri, M J Sierra, Marc Lipsitch, F Simón, M Santillana, M A Hernán
Near real-time surveillance of the SARS-CoV-2 epidemic with incomplete data. medRxiv : the preprint server for health sciences (2021)
James A Hay, Lee Kennedy-Shaffer, Sanjat Kanjilal, Niall J Lennon, Stacey B Gabriel, Marc Lipsitch, Michael Joseph Mina
Estimating epidemiologic dynamics from cross-sectional viral load distributions. Science (New York, N.Y.) 373 (6552) (2021)
Daniel B Larremore, Bryan Wilder, Evan Lester, Soraya Shehata, James M Burke, James A Hay, Milind Tambe, Michael Joseph Mina, Roy Parker
Test sensitivity is secondary to frequency and turnaround time for COVID-19 screening. Science advances 7 (1) (2021)
James A Hay, Joel Hellewell, Xueting Qiu
When intuition falters: repeated testing accuracy during an epidemic. European journal of epidemiology 36 (7) (2021)
Brian Cleary, James A Hay, Brendan Blumenstiel, Maegan Harden, Michelle Cipicchio, Jon Bezney, Brooke Simonton, David Hong, Madikay Senghore, Abdul K Sesay, Stacey Gabriel, Aviv Regev, Michael Joseph Mina
Using viral load and epidemic dynamics to optimize pooled testing in resource-constrained settings. Science translational medicine 13 (589) (2021)
Bingyi Yang, Justin Lessler, Huachen Zhu, Chao Qiang Jiang, Jonathan M Read, James A Hay, Kin On Kwok, Ruiyin Shen, Yi Guan, Steven Riley, Derek A T Cummings
Life course exposures continually shape antibody profiles and risk of seroconversion to influenza. PLoS pathogens 16 (7) (2020)
James A Hay, Amanda Minter, Kylie E C Ainslie, Justin Lessler, Bingyi Yang, Derek A T Cummings, Adam J Kucharski, Steven Riley
An open source tool to infer epidemiological and immunological dynamics from serological data: serosolver. PLoS computational biology 16 (5) (2020)
Katelyn M Gostic, Lauren McGough, Edward B Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A Hay, Pablo De Salazar, Joel Hellewell, Sophie Meakin, James D Munday, Nikos I Bosse, Katharine Sherrat, Robin N Thompson, Laura F White, Jana Sanne Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah E Cobey
Practical considerations for measuring the effective reproductive number, Rt. PLoS computational biology 16 (12) (2020)
James A Hay, Karen Laurie, Michael T White, Steven Riley
Characterising antibody kinetics from multiple influenza infection and vaccination events in ferrets. PLoS computational biology 15 (8) (2019)