Joshua S Weitz

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 64

Top Topics

Risk Assessment

Pseudomonas Aeruginosa

Antimicrobial Resistance

Top Venues

bioRxiv : the preprint server for biology

Nature ecology & evolution

Nature communications

The ISME journal

This page only lists publications with an associated author ORCID identifier.

Publications

Sophia Zborowsky, Jérémy Seurat, Quentin Balacheff, Solène Ecomard, Chau Nguyen Ngoc Minh, Marie Titécat, Emma Evrard, Rogelio A Rodriguez-Gonzalez, Jacopo Marchi, Joshua S Weitz, Laurent Debarbieux
Macrophage-induced reduction of bacteriophage density limits the efficacy of in vivo pulmonary phage therapy. bioRxiv : the preprint server for biology (2024)
Stephen J Beckett, David Demory, Ashley R Coenen, John R Casey, Mathilde Dugenne, Christopher L Follett, Paige Connell, Michael C G Carlson, Sarah K Hu, Samuel T Wilson, Daniel Muratore, Rogelio A Rodriguez-Gonzalez, Shengyun Peng, Kevin W Becker, Daniel R Mende, E Virginia Armbrust, David A Caron, Debbie Lindell, Angelicque E White, François Ribalet, Joshua S Weitz
Disentangling top-down drivers of mortality underlying diel population dynamics of Prochlorococcus in the North Pacific Subtropical Gyre. Nature communications 15 (1) (2024)
Adriana Lucia-Sanz, Shengyun Peng, Chung Yin Joey Leung, Animesh Gupta, Justin R Meyer, Joshua S Weitz
Inferring strain-level mutational drivers of phage-bacteria interaction phenotypes. bioRxiv : the preprint server for biology (2024)
Marian Dominguez-Mirazo, Jeremy D Harris, David Demory, Joshua S Weitz
Accounting for cellular-level variation in lysis: implications for virus-host dynamics. mBio (2024)
Sophia Zborowsky, Jérémy Seurat, Quentin Balacheff, Solène Ecomard, Chau Nguyen Ngoc Minh, Marie Titécat, Emma Evrard, Rogelio A Rodriguez-Gonzalez, Jacopo Marchi, Joshua S Weitz, Laurent Debarbieux
Macrophage-induced reduction of bacteriophage density limits the efficacy of in vivo pulmonary phage therapy. bioRxiv : the preprint server for biology (2024)
Rogelio A Rodriguez-Gonzalez, Quentin Balacheff, Laurent Debarbieux, Jacopo Marchi, Joshua S Weitz
Metapopulation model of phage therapy of an acute Pseudomonas aeruginosa lung infection. mSystems (2024)
Sophia Zborowsky, Jérémy Seurat, Quentin Balacheff, Chau Nguyen Ngoc Minh, Marie Titécat, Emma Evrard, Rogelio A Rodriguez-Gonzalez, Jacopo Marchi, Joshua S Weitz, Laurent Debarbieux
Macrophage-induced reduction of bacteriophage density limits the efficacy of in vivo pulmonary phage therapy. bioRxiv : the preprint server for biology (2024)
Marian Dominguez-Mirazo, Jeremy D Harris, David Demory, Joshua S Weitz
Accounting for cellular-level variation in lysis: implications for virus-host dynamics. mBio 15 (8) (2024)
Marian Dominguez-Mirazo, Jeremy D Harris, David Demory, Joshua S Weitz
Accounting for cellular-level variation in lysis: implications for virus-host dynamics. mBio 15 (8) (2024)
Adriana Lucia-Sanz, Shengyun Peng, Chung Yin Joey Leung, Animesh Gupta, Justin R Meyer, Joshua S Weitz
Inferring strain-level mutational drivers of phage-bacteria interaction phenotypes. bioRxiv : the preprint server for biology (2024)
Rogelio A Rodriguez-Gonzalez, Quentin Balacheff, Laurent Debarbieux, Jacopo Marchi, Joshua S Weitz
Metapopulation model of phage therapy of an acute Pseudomonas aeruginosa lung infection. bioRxiv : the preprint server for biology (2024)
Rozenn M Pineau, Eric Libby, David Demory, Dung T Lac, Thomas C Day, Pablo Bravo, Peter J Yunker, Joshua S Weitz, G Ozan Bozdag, William C Ratcliff
Emergence and maintenance of stable coexistence during a long-term multicellular evolution experiment. Nature ecology & evolution (2024)
Rozenn M Pineau, Eric Libby, David Demory, Dung T Lac, Thomas C Day, Pablo Bravo, Peter J Yunker, Joshua S Weitz, G Ozan Bozdag, William C Ratcliff
Emergence and maintenance of stable coexistence during a long-term multicellular evolution experiment. Nature ecology & evolution (2024)
Rozenn M Pineau, Eric Libby, David Demory, Dung T Lac, Thomas C Day, Pablo Bravo, Peter J Yunker, Joshua S Weitz, G Ozan Bozdag, William C Ratcliff
Emergence and maintenance of stable coexistence during a long-term multicellular evolution experiment. Nature ecology & evolution 8 (5) (2024)
Sophia Zborowsky, Jérémy Seurat, Quentin Balacheff, Chau Nguyen Ngoc Minh, Marie Titécat, Emma Evrard, Rogelio A Rodriguez-Gonzalez, Jacopo Marchi, Joshua S Weitz, Laurent Debarbieux
Macrophage-induced reduction of bacteriophage density limits the efficacy of in vivo pulmonary phage therapy. bioRxiv : the preprint server for biology (2024)
Rozenn M Pineau, Eric Libby, David Demory, Dung T Lac, Thomas C Day, Pablo Bravo, Peter J Yunker, Joshua S Weitz, G Ozan Bozdag, William C Ratcliff
Emergence and maintenance of stable coexistence during a long-term multicellular evolution experiment. Nature ecology & evolution (2024)
Rozenn M Pineau, Eric Libby, David Demory, Dung T Lac, Thomas C Day, Pablo Bravo, Peter J Yunker, Joshua S Weitz, G Ozan Bozdag, William C Ratcliff
Emergence and maintenance of stable coexistence during a long-term multicellular evolution experiment. Nature ecology & evolution 8 (5) (2024)
Marian Dominguez-Mirazo, Jeremy D Harris, David Demory, Joshua S Weitz
Accounting for cellular-level variation in lysis: implications for virus-host dynamics. mBio 15 (8) (2024)
Stephen J Beckett, David Demory, Ashley R Coenen, John R Casey, Mathilde Dugenne, Christopher L Follett, Paige Connell, Michael C G Carlson, Sarah K Hu, Samuel T Wilson, Daniel Muratore, Rogelio A Rodriguez-Gonzalez, Shengyun Peng, Kevin W Becker, Daniel R Mende, E Virginia Armbrust, David A Caron, Debbie Lindell, Angelicque E White, François Ribalet, Joshua S Weitz
Disentangling top-down drivers of mortality underlying diel population dynamics of Prochlorococcus in the North Pacific Subtropical Gyre. Nature communications 15 (1) (2024)
Rogelio A Rodriguez-Gonzalez, Quentin Balacheff, Laurent Debarbieux, Jacopo Marchi, Joshua S Weitz
Metapopulation model of phage therapy of an acute Pseudomonas aeruginosa lung infection. bioRxiv : the preprint server for biology (2024)
Adriana Lucia-Sanz, Shengyun Peng, Chung Yin Joey Leung, Animesh Gupta, Justin R Meyer, Joshua S Weitz
Inferring strain-level mutational drivers of phage-bacteria interaction phenotypes. bioRxiv : the preprint server for biology (2024)
Sophia Zborowsky, Jérémy Seurat, Quentin Balacheff, Chau Nguyen Ngoc Minh, Marie Titécat, Emma Evrard, Rogelio A Rodriguez-Gonzalez, Jacopo Marchi, Joshua S Weitz, Laurent Debarbieux
Macrophage-induced reduction of bacteriophage density limits the efficacy of in vivo pulmonary phage therapy. bioRxiv : the preprint server for biology (2024)
Stephen J Beckett, David Demory, Ashley R Coenen, John R Casey, Mathilde Dugenne, Christopher L Follett, Paige Connell, Michael C G Carlson, Sarah K Hu, Samuel T Wilson, Daniel Muratore, Rogelio A Rodriguez-Gonzalez, Shengyun Peng, Kevin W Becker, Daniel R Mende, E Virginia Armbrust, David A Caron, Debbie Lindell, Angelicque E White, François Ribalet, Joshua S Weitz
Disentangling top-down drivers of mortality underlying diel population dynamics of Prochlorococcus in the North Pacific Subtropical Gyre. Nature communications 15 (1) (2024)
Stephen J Beckett, David Demory, Ashley R Coenen, John R Casey, Mathilde Dugenne, Christopher L Follett, Paige Connell, Michael C G Carlson, Sarah K Hu, Samuel T Wilson, Daniel Muratore, Rogelio A Rodriguez-Gonzalez, Shengyun Peng, Kevin W Becker, Daniel R Mende, E Virginia Armbrust, David A Caron, Debbie Lindell, Angelicque E White, François Ribalet, Joshua S Weitz
Disentangling top-down drivers of mortality underlying diel population dynamics of Prochlorococcus in the North Pacific Subtropical Gyre. Nature communications 15 (1) (2024)
Rozenn M Pineau, Eric Libby, David Demory, Dung T Lac, Thomas C Day, Pablo Bravo, Peter J Yunker, Joshua S Weitz, G Ozan Bozdag, William C Ratcliff
Emergence and maintenance of stable coexistence during a long-term multicellular evolution experiment. Nature ecology & evolution (2024)
Daniel A Schwartz, William R Shoemaker, Andreea Măgălie, Joshua S Weitz, Jay T Lennon
Bacteria-phage coevolution with a seed bank. The ISME journal (2023)
Sang Woo Park, Jonathan Dushoff, Bryan T Grenfell, Joshua S Weitz
Intermediate levels of asymptomatic transmission can lead to the highest epidemic fatalities. PNAS nexus 2 (4) (2023)
Rozenn M Pineau, David Demory, Eric Libby, Dung T Lac, Thomas C Day, Pablo Bravo, Peter J Yunker, Joshua S Weitz, G Ozan Bozdag, William C Ratcliff
Emergence and maintenance of stable coexistence during a long-term multicellular evolution experiment. bioRxiv : the preprint server for biology (2023)
Daniel Muratore, Anthony D Bertagnolli, Laura A Bristow, Bo Thamdrup, Joshua S Weitz, Frank J Stewart
Microbial and Viral Genome and Proteome Nitrogen Demand Varies across Multiple Spatial Scales within a Marine Oxygen Minimum Zone. mSystems (2023)
Joshua M Borin, Justin J Lee, Adriana Lucia-Sanz, Krista R Gerbino, Joshua S Weitz, Justin R Meyer
Rapid bacteria-phage coevolution drives the emergence of multiscale networks. Science (New York, N.Y.) 382 (6671) (2023)
Sang Woo Park, Jonathan Dushoff, Bryan T Grenfell, Joshua S Weitz
Intermediate levels of asymptomatic transmission can lead to the highest epidemic fatalities. PNAS nexus 2 (4) (2023)
Sang Woo Park, Kaiyuan Sun, Sam Abbott, Ron Sender, Yinon M Bar-On, Joshua S Weitz, Sebastian Funk, Bryan T Grenfell, Jantien A Backer, Jacco Wallinga, Cecile Viboud, Jonathan Dushoff
Inferring the differences in incubation-period and generation-interval distributions of the Delta and Omicron variants of SARS-CoV-2. Proceedings of the National Academy of Sciences of the United States of America 120 (22) (2023)
Sang Woo Park, Jonathan Dushoff, Bryan T Grenfell, Joshua S Weitz
Intermediate levels of asymptomatic transmission can lead to the highest epidemic fatalities. PNAS nexus 2 (4) (2023)
Sang Woo Park, Jonathan Dushoff, Bryan T Grenfell, Joshua S Weitz
Intermediate levels of asymptomatic transmission can lead to the highest epidemic fatalities. PNAS nexus 2 (4) (2023)
Daniel Muratore, Angela K Boysen, Matthew J Harke, Kevin W Becker, John R Casey, Sacha N Coesel, Daniel R Mende, Samuel T Wilson, Frank O'Neill Aylward, John M Eppley, Alice Vislova, Shengyun Peng, Rogelio A Rodriguez-Gonzalez, Stephen J Beckett, E Virginia Armbrust, Edward F DeLong, David M Karl, Angelicque E White, Jonathan P Zehr, Benjamin A S Van Mooy, Sonya T Dyhrman, Anitra E Ingalls, Joshua S Weitz
Complex marine microbial communities partition metabolism of scarce resources over the diel cycle. Nature ecology & evolution 6 (2) (2022)
Shashwat Shivam, Guanlin Li, Adriana Lucia-Sanz, Joshua S Weitz
Timescales modulate optimal lysis-lysogeny decision switches and near-term phage reproduction. Virus evolution 8 (1) (2022)
Sang Woo Park, Benjamin M Bolker, Sebastian Funk, Charlotte Jessica E Metcalf, Joshua S Weitz, Bryan T Grenfell, Jonathan Dushoff
The importance of the generation interval in investigating dynamics and control of new SARS-CoV-2 variants. Journal of the Royal Society, Interface 19 (191) (2022)
Ilia Maidanik, Shay Kirzner, Irena Pekarski, Laure Arsenieff, Ran Tahan, Michael C G Carlson, Dror Shitrit, Nava Baran, Svetlana Goldin, Joshua S Weitz, Debbie Lindell
Cyanophages from a less virulent clade dominate over their sister clade in global oceans. The ISME journal 16 (9) (2022)
Shashwat Shivam, Joshua S Weitz, Yorai Wardi
Vaccine stockpile sharing for selfish objectives. PLOS global public health 2 (12) (2022)
Alicia N M Kraay, Kristin N Nelson, Conan Y Zhao, David Demory, Joshua S Weitz, Benjamin A Lopman
Modeling serological testing to inform relaxation of social distancing for COVID-19 control. Nature communications 12 (1) (2021)
David Demory, Riyue Liu, Yue Chen, Fangxin Zhao, Ashley R Coenen, Qinglu Zeng, Joshua S Weitz
Correction for Demory et al., "Linking Light-Dependent Life History Traits with Population Dynamics for Prochlorococcus and Cyanophage". mSystems 6 (5) (2021)
Adrienne M S Correa, Cristina Howard-Varona, Samantha R Coy, Alison Buchan, Matthew B Sullivan, Joshua S Weitz
Revisiting the rules of life for viruses of microorganisms. Nature reviews. Microbiology 19 (8) (2021)
Sang Woo Park, Kaiyuan Sun, David Champredon, Michael Li, Benjamin M Bolker, David J D Earn, Joshua S Weitz, Bryan T Grenfell, Jonathan Dushoff
Forward-looking serial intervals correctly link epidemic growth to reproduction numbers. Proceedings of the National Academy of Sciences of the United States of America 118 (2) (2021)
Kevin W Becker, Matthew J Harke, Daniel R Mende, Daniel Muratore, Joshua S Weitz, Edward F DeLong, Sonya T Dyhrman, Benjamin A S Van Mooy
Combined pigment and metatranscriptomic analysis reveals highly synchronized diel patterns of phenotypic light response across domains in the open oligotrophic ocean. The ISME journal 15 (2) (2020)
Joshua S Weitz, Sang Woo Park, Ceyhun Eksin, Jonathan Dushoff
Awareness-driven behavior changes can shift the shape of epidemics away from peaks and toward plateaus, shoulders, and oscillations. Proceedings of the National Academy of Sciences of the United States of America 117 (51) (2020)
Stephen J Beckett, Marian Dominguez-Mirazo, Seolha Lee, Clio Andris, Joshua S Weitz
Spread of COVID-19 through Georgia, USA. Near-term projections and impacts of social distancing via a metapopulation model. medRxiv : the preprint server for health sciences (2020)
David Demory, Riyue Liu, Yue Chen, Fangxin Zhao, Ashley R Coenen, Qinglu Zeng, Joshua S Weitz
Linking Light-Dependent Life History Traits with Population Dynamics for Prochlorococcus and Cyanophage. mSystems 5 (2) (2020)
Joshua S Weitz, Stephen J Beckett, Ashley R Coenen, David Demory, Marian Dominguez-Mirazo, Jonathan Dushoff, Chung Yin Joey Leung, Guanlin Li, Andreea Măgălie, Sang Woo Park, Rogelio Rodriguez-Gonzalez, Shashwat Shivam, Conan Y Zhao
Modeling shield immunity to reduce COVID-19 epidemic spread. Nature medicine 26 (6) (2020)
Rogelio A Rodriguez-Gonzalez, Chung Yin Leung, Benjamin K Chan, Paul E Turner, Joshua S Weitz
Quantitative Models of Phage-Antibiotic Combination Therapy. mSystems 5 (1) (2020)
Guanlin Li, Chung Yin Leung, Yorai Wardi, Laurent Debarbieux, Joshua S Weitz
Optimizing the Timing and Composition of Therapeutic Phage Cocktails: A Control-Theoretic Approach. Bulletin of mathematical biology 82 (6) (2020)
Guanlin Li, Michael H Cortez, Jonathan Dushoff, Joshua S Weitz
When to be temperate: on the fitness benefits of lysis vs. lysogeny. Virus evolution 6 (2) (2020)
Alita R Burmeister, Elsa Hansen, Jessica J Cunningham, E Hesper Rego, Paul E Turner, Joshua S Weitz, Michael E Hochberg
Fighting microbial pathogens by integrating host ecosystem interactions and evolution. BioEssays : news and reviews in molecular, cellular and developmental biology 43 (3) (2020)
Sheyda Azimi, Aled E L Roberts, Shengyun Peng, Joshua S Weitz, Alan McNally, Samuel P Brown, Stephen P Diggle
Allelic polymorphism shapes community function in evolving Pseudomonas aeruginosa populations. The ISME journal 14 (8) (2020)
Joshua S Weitz, Stephen J Beckett, Ashley R Coenen, David Demory, Marian Dominguez-Mirazo, Jonathan Dushoff, Chung-Yin Leung, Guanlin Li, Andreea Magalie, Sang Woo Park, Rogelio Rodriguez-Gonzalez, Shashwat Shivam, Conan Zhao
Intervention Serology and Interaction Substitution: Modeling the Role of 'Shield Immunity' in Reducing COVID-19 Epidemic Spread. medRxiv : the preprint server for health sciences (2020)
Noor Mruwat, Michael C G Carlson, Svetlana Goldin, François Ribalet, Shay Kirzner, Yotam Hulata, Stephen J Beckett, Dror Shitrit, Joshua S Weitz, E Virginia Armbrust, Debbie Lindell
A single-cell polony method reveals low levels of infected Prochlorococcus in oligotrophic waters despite high cyanophage abundances. The ISME journal 15 (1) (2020)
Aroon T Chande, Seolha Lee, Mallory J Harris, Quan Nguyen, Stephen J Beckett, Troy Hilley, Clio Andris, Joshua S Weitz
Real-time, interactive website for US-county-level COVID-19 event risk assessment. Nature human behaviour 4 (12) (2020)
Hend Alrasheed, Rong Jin, Joshua S Weitz
Author Correction: Caution in inferring viral strategies from abundance correlations in marine metagenomes. Nature communications 10 (1) (2019)
Marian Dominguez-Mirazo, Rong Jin, Joshua S Weitz
Functional and Comparative Genomic Analysis of Integrated Prophage-Like Sequences in "Candidatus Liberibacter asiaticus". mSphere 4 (6) (2019)
Hend Alrasheed, Rong Jin, Joshua S Weitz
Caution in inferring viral strategies from abundance correlations in marine metagenomes. Nature communications 10 (1) (2019)
Bradford P Taylor, Joshua S Weitz, Corina P D Brussaard, Matthias G Fischer
Quantitative Infection Dynamics of Cafeteria Roenbergensis Virus. Viruses 10 (9) (2018)
Jacob H Munson-McGee, Shengyun Peng, Samantha Dewerff, Ramunas Stepanauskas, Rachel J Whitaker, Joshua S Weitz, Mark J Young
A virus or more in (nearly) every cell: ubiquitous networks of virus-host interactions in extreme environments. The ISME journal 12 (7) (2018)
Ashley R Coenen, Joshua S Weitz
Limitations of Correlation-Based Inference in Complex Virus-Microbe Communities. mSystems 3 (4) (2018)
Charles H Wigington, Derek Sonderegger, Corina P D Brussaard, Alison Buchan, Jan F Finke, Jed A Fuhrman, Jay T Lennon, Mathias Middelboe, Curtis A Suttle, Charles Stock, William H Wilson, K Eric Wommack, Steven W Wilhelm, Joshua S Weitz
Re-examination of the relationship between marine virus and microbial cell abundances. Nature microbiology 1 (2016)
Luis F Jover, Justin Romberg, Joshua S Weitz
Inferring phage-bacteria infection networks from time-series data. Royal Society open science 3 (11) (2016)
Alexander K Bucksch, James Burridge, Larry M York, Abhiram Das, Eric A Nord, Joshua S Weitz, Jonathan P Lynch
Image-based high-throughput field phenotyping of crop roots. Plant physiology 166 (2) (2014)