Ramunas Stepanauskas (R Massana, Ramunas Stepanauskus)

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Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 39

Top Venues

The ISME journal

Proceedings of the National Academy of Sciences of the United States of America

Nature communications

Scientific data

Bigelow Laboratory for Ocean Sciences

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Bigelow Laboratory for Ocean Sciences Aug 01 2005

United States

Senior Research Scientist

Publications

Melody R Lindsay, Timothy D'Angelo, Jacob H Munson-McGee, Alireza Saidi-Mehrabad, Molly Devlin, Julia McGonigle, Elizabeth Goodell, Melissa Herring, Laura C Lubelczyk, Corianna Mascena, Julia M Brown, Greg Gavelis, Jiarui Liu, D J Yousavich, Scott D Hamilton-Brehm, Brian P Hedlund, Susan Lang, Tina Treude, Nicole J Poulton, Ramunas Stepanauskas, Duane P Moser, David Emerson, Beth N Orcutt
Species-resolved, single-cell respiration rates reveal dominance of sulfate reduction in a deep continental subsurface ecosystem. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Melody R Lindsay, Timothy D'Angelo, Jacob H Munson-McGee, Alireza Saidi-Mehrabad, Molly Devlin, Julia McGonigle, Elizabeth Goodell, Melissa Herring, Laura C Lubelczyk, Corianna Mascena, Julia M Brown, Greg Gavelis, Jiarui Liu, D J Yousavich, Scott D Hamilton-Brehm, Brian P Hedlund, Susan Lang, Tina Treude, Nicole J Poulton, Ramunas Stepanauskas, Duane P Moser, David Emerson, Beth N Orcutt
Species-resolved, single-cell respiration rates reveal dominance of sulfate reduction in a deep continental subsurface ecosystem. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Melody R Lindsay, Timothy D'Angelo, Jacob H Munson-McGee, Alireza Saidi-Mehrabad, Molly Devlin, Julia McGonigle, Elizabeth Goodell, Melissa Herring, Laura C Lubelczyk, Corianna Mascena, Julia M Brown, Greg Gavelis, Jiarui Liu, D J Yousavich, Scott D Hamilton-Brehm, Brian P Hedlund, Susan Lang, Tina Treude, Nicole J Poulton, Ramunas Stepanauskas, Duane P Moser, David Emerson, Beth N Orcutt
Species-resolved, single-cell respiration rates reveal dominance of sulfate reduction in a deep continental subsurface ecosystem. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Melody R Lindsay, Timothy D'Angelo, Jacob H Munson-McGee, Alireza Saidi-Mehrabad, Molly Devlin, Julia McGonigle, Elizabeth Goodell, Melissa Herring, Laura C Lubelczyk, Corianna Mascena, Julia M Brown, Greg Gavelis, Jiarui Liu, D J Yousavich, Scott D Hamilton-Brehm, Brian P Hedlund, Susan Lang, Tina Treude, Nicole J Poulton, Ramunas Stepanauskas, Duane P Moser, David Emerson, Beth N Orcutt
Species-resolved, single-cell respiration rates reveal dominance of sulfate reduction in a deep continental subsurface ecosystem. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Melody R Lindsay, Timothy D'Angelo, Jacob H Munson-McGee, Alireza Saidi-Mehrabad, Molly Devlin, Julia McGonigle, Elizabeth Goodell, Melissa Herring, Laura C Lubelczyk, Corianna Mascena, Julia M Brown, Greg Gavelis, Jiarui Liu, D J Yousavich, Scott D Hamilton-Brehm, Brian P Hedlund, Susan Lang, Tina Treude, Nicole J Poulton, Ramunas Stepanauskas, Duane P Moser, David Emerson, Beth N Orcutt
Species-resolved, single-cell respiration rates reveal dominance of sulfate reduction in a deep continental subsurface ecosystem. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Melody R Lindsay, Timothy D'Angelo, Jacob H Munson-McGee, Alireza Saidi-Mehrabad, Molly Devlin, Julia McGonigle, Elizabeth Goodell, Melissa Herring, Laura C Lubelczyk, Corianna Mascena, Julia M Brown, Greg Gavelis, Jiarui Liu, D J Yousavich, Scott D Hamilton-Brehm, Brian P Hedlund, Susan Lang, Tina Treude, Nicole J Poulton, Ramunas Stepanauskas, Duane P Moser, David Emerson, Beth N Orcutt
Species-resolved, single-cell respiration rates reveal dominance of sulfate reduction in a deep continental subsurface ecosystem. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Cale O Seymour, Marike Palmer, Eric D Becraft, Ramunas Stepanauskas, Ariel D Friel, Frederik Schulz, Tanja Woyke, Emiley A Eloe-Fadrosh, Dengxun Lai, Jian-Yu Jiao, Zheng-Shuang Hua, Lan Liu, Zheng-Han Lian, Wen-Jun Li, Maria Chuvochina, Brianna K Finley, Benjamin J Koch, Egbert Schwartz, Paul Dijkstra, Duane P Moser, Bruce A Hungate, Brian P Hedlund
Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota. Nature microbiology (2023)
Timothy D'Angelo, Jacqueline Goordial, Melody R Lindsay, Julia McGonigle, Anne E Booker, Duane P Moser, Ramunas Stepanauskas, Beth N Orcutt
Replicated life-history patterns and subsurface origins of the bacterial sister phyla Nitrospirota and Nitrospinota. The ISME journal (2023)
Anne E Booker, Timothy D'Angelo, Annabelle Adams-Beyea, Julia M Brown, Olivia Nigro, Michael S Rappé, Ramunas Stepanauskas, Beth N Orcutt
Life strategies for Aminicenantia in subseafloor oceanic crust. The ISME journal (2023)
Julia Anstett, Alvaro M Plominsky, Edward F DeLong, Alyse Kiesser, Klaus Jürgens, Connor Morgan-Lang, Ramunas Stepanauskas, Frank J Stewart, Osvaldo Ulloa, Tanja Woyke, Rex R Malmstrom, Steven James Hallam
A compendium of bacterial and archaeal single-cell amplified genomes from oxygen deficient marine waters. Scientific data 10 (1) (2023)
Clara Martínez-Pérez, Chris Greening, Sean K Bay, Rachael J Lappan, Zihao Zhao, Daniele De Corte, Christina L Hulbe, Christian Ohneiser, Craig L Stevens, Blair Thomson, Ramunas Stepanauskas, José M González, Ramiro Logares, Gerhard J Herndl, Sergio E Morales, Federico Baltar
Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf. Nature communications 13 (1) (2022)
Marianne Acker, Shane L Hogle, Paul M Berube, Thomas Hackl, Allison Coe, Ramunas Stepanauskas, Sallie W Chisholm, Daniel J Repeta
Phosphonate production by marine microbes: Exploring new sources and potential function. Proceedings of the National Academy of Sciences of the United States of America 119 (11) (2022)
Jacob H Munson-McGee, Melody R Lindsay, Eva Sintes, Julia M Brown, Timothy D'Angelo, Joe Brown, Laura C Lubelczyk, Paxton Tomko, David Emerson, Beth N Orcutt, Nicole J Poulton, Gerhard J Herndl, Ramunas Stepanauskas
Decoupling of respiration rates and abundance in marine prokaryoplankton. Nature (2022)
Robert M Bowers, Stephen Nayfach, Frederik Schulz, Sean P Jungbluth, Ilona A Ruhl, Andriy Sheremet, Janey Lee, Danielle Goudeau, Emiley A Eloe-Fadrosh, Ramunas Stepanauskas, Rex R Malmstrom, Nikos C Kyrpides, Peter F Dunfield, Tanja Woyke
Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution. The ISME journal 16 (5) (2021)
Eric D Becraft, Maggie C Y Lau Vetter, Oliver K I Bezuidt, Julia M Brown, Jessica M Labonté, Kotryna Kauneckaite-Griguole, Ruta Salkauskaite, Gediminas Alzbutas, Joshua D Sackett, Brittany R Kruger, Vitaly Kadnikov, Esta van Heerden, Duane Moser, Nikolai Ravin, Tullis Onstott, Ramunas Stepanauskas
Evolutionary stasis of a deep subsurface microbial lineage. The ISME journal 15 (10) (2021)
Elizabeth M Fones, Daniel R Colman, Emily A Kraus, Ramunas Stepanauskas, Alexis S Templeton, John R Spear, Eric S Boyd
Diversification of methanogens into hyperalkaline serpentinizing environments through adaptations to minimize oxidant limitation. The ISME journal 15 (4) (2020)
Jessica K Jarett, Mária Džunková, Frederik Schulz, Simon Roux, A David Páez-Espino, Emiley A Eloe-Fadrosh, Sean P Jungbluth, Natalia N Ivanova, John R Spear, Stephanie A Carr, Christopher B Trivedi, Frank A Corsetti, Hope A Johnson, Eric Becraft, Nikos C Kyrpides, Ramunas Stepanauskas, Tanja Woyke
Insights into the dynamics between viruses and their hosts in a hot spring microbial mat. The ISME journal 14 (10) (2020)
Minglei Ren, Xiaoyuan Feng, Yongjie Huang, Hui Wang, Zhong Hu, Scott Clingenpeel, Brandon K Swan, Miguel M Fonseca, David Posada, Ramunas Stepanauskas, James Timothy Hollibaugh, Peter G Foster, Tanja Woyke, Haiwei Luo
Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution. The ISME journal 13 (9) (2019)
Stephanie A Carr, Sean P Jungbluth, Emiley A Eloe-Fadrosh, Ramunas Stepanauskas, Tanja Woyke, Michael S Rappé, Beth N Orcutt
Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere. The ISME journal 13 (6) (2019)
Paula B Matheus Carnevali, Frederik Schulz, Cindy J Castelle, Rose S Kantor, Patrick M Shih, Itai Sharon, Joanne M Santini, Matthew R Olm, Yuki Amano, Brian C Thomas, Karthik Anantharaman, David Burstein, Eric D Becraft, Ramunas Stepanauskas, Tanja Woyke, Jillian F Banfield
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria. Nature communications 10 (1) (2019)
M E Sieracki, N J Poulton, Olivier Jaillon, P Wincker, Colomban de Vargas, L Rubinat-Ripoll, R Stepanauskas, R Logares, Ramunas Stepanauskas
Single cell genomics yields a wide diversity of small planktonic protists across major ocean ecosystems. Scientific reports 9 (1) (2019)
Paul M Berube, Anna N Rasmussen, Rogier Braakman, Ramunas Stepanauskas, Sallie W Chisholm
Emergence of trait variability through the lens of nitrogen assimilation in Prochlorococcus. eLife 8 (2019)
Paula B Matheus Carnevali, Frederik Schulz, Cindy J Castelle, Rose S Kantor, Patrick M Shih, Itai Sharon, Joanne M Santini, Matthew R Olm, Yuki Amano, Brian C Thomas, Karthik Anantharaman, David Burstein, Eric D Becraft, Ramunas Stepanauskas, Tanja Woyke, Jillian F Banfield
Author Correction: Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria. Nature communications 10 (1) (2019)
Paul M Berube, Steven J Biller, Thomas Hackl, Shane L Hogle, Brandon M Satinsky, Jamie W Becker, Rogier Braakman, Sara B Collins, Libusha Kelly, Jessie Berta-Thompson, Allison Coe, Kristin Bergauer, Heather A Bouman, Thomas J Browning, Daniele De Corte, Christel Hassler, Yotam Hulata, Jeremy E Jacquot, Elizabeth W Maas, Thomas Reinthaler, Eva Sintes, Taichi Yokokawa, Debbie Lindell, Ramunas Stepanauskas, Sallie W Chisholm
Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments. Scientific data 5 (2018)
Maria G Pachiadaki, Eva Sintes, Kristin Bergauer, Julia M Brown, Nicholas R Record, Brandon K Swan, Mary Elizabeth Mathyer, Steven James Hallam, Purificacion Lopez-Garcia, Yoshihiro Takaki, Takuro Nunoura, Tanja Woyke, Gerhard J Herndl, Ramunas Stepanauskas
Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation. Science (New York, N.Y.) 358 (6366) (2018)
Yoann Seeleuthner, Samuel Mondy, Vincent Lombard, Quentin Carradec, Eric Pelletier, Marc Wessner, Jade Leconte, Jean-François Mangot, Julie Poulain, Karine Labadie, Ramiro Logares, Shinichi Sunagawa, Véronique de Berardinis, Marcel Salanoubat, Céline Dimier, Stefanie Kandels-Lewis, Marc Picheral, Sarah Searson, null null, Stephane Pesant, Nicole Poulton, Ramunas Stepanauskas, Peer Bork, Chris Bowler, Pascal Hingamp, Matthew B Sullivan, Daniele Iudicone, Ramon Massana, Jean-Marc Aury, Bernard Henrissat, Eric Karsenti, Olivier Jaillon, Mike Sieracki, Colomban de Vargas, Patrick Wincker
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans. Nature communications 9 (1) (2018)
Jacob H Munson-McGee, Shengyun Peng, Samantha Dewerff, Ramunas Stepanauskas, Rachel J Whitaker, Joshua S Weitz, Mark J Young
A virus or more in (nearly) every cell: ubiquitous networks of virus-host interactions in extreme environments. The ISME journal 12 (7) (2018)
Haiwei Luo, Yongjie Huang, Ramunas Stepanauskas, Jijun Tang
Excess of non-conservative amino acid changes in marine bacterioplankton lineages with reduced genomes. Nature microbiology 2 (2017)
Ramunas Stepanauskas, Elizabeth A Fergusson, Joseph Brown, Nicole J Poulton, Ben Tupper, Jessica M Labonté, Eric D Becraft, Julia M Brown, Maria G Pachiadaki, Tadas Povilaitis, Brian P Thompson, Corianna J Mascena, Wendy K Bellows, Arvydas Lubys
Author Correction: Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles. Nature communications 8 (1) (2017)
Ramunas Stepanauskas, Elizabeth A Fergusson, Joseph Brown, Nicole J Poulton, Ben Tupper, Jessica M Labonté, Eric D Becraft, Julia M Brown, Maria G Pachiadaki, Tadas Povilaitis, Brian P Thompson, Corianna J Mascena, Wendy K Bellows, Arvydas Lubys
Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles. Nature communications 8 (1) (2017)
Robert M Bowers, Nikos C Kyrpides, Ramunas Stepanauskas, Miranda Harmon-Smith, Devin Doud, T B K Reddy, Frederik Schulz, Jessica Jarett, Adam R Rivers, Emiley A Eloe-Fadrosh, Susannah G Tringe, Natalia N Ivanova, Alex Copeland, Alicia Clum, Eric D Becraft, Rex R Malmstrom, Bruce Birren, Mircea Podar, Peer Bork, George M Weinstock, George M Garrity, Jeremy A Dodsworth, Shibu Yooseph, Granger G Sutton, Frank O Glöckner, Jack A Gilbert, William C Nelson, Steven J Hallam, Sean P Jungbluth, Thijs J G Ettema, Scott Tighe, Konstantinos T Konstantinidis, Wen-Tso Liu, Brett J Baker, Thomas Rattei, Jonathan A Eisen, Brian Hedlund, Katherine D McMahon, Noah Fierer, Rob Knight, Rob Finn, Guy Cochrane, Ilene Karsch-Mizrachi, Gene W Tyson, Christian Rinke, null null, Alla L Lapidus, Folker Meyer, Pelin Yilmaz, Donovan H Parks, A Murat Eren, Lynn Schriml, Jillian F Banfield, Philip Hugenholtz, Tanja Woyke
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature biotechnology 35 (8) (2017)
Alyse K Hawley, Masaru K Nobu, Jody J Wright, W Evan Durno, Connor Morgan-Lang, Brent Sage, Patrick Schwientek, Brandon K Swan, Christian Rinke, Monica Torres-Beltrán, Keith Mewis, Wen-Tso Liu, Ramunas Stepanauskas, Tanja Woyke, Steven James Hallam
Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients. Nature communications 8 (1) (2017)
Adriana Alberti, Julie Poulain, Stefan Engelen, Karine Labadie, Sarah Romac, Isabel Ferrera, Guillaume Albini, Jean-Marc Aury, Caroline Belser, Alexis Bertrand, Corinne Cruaud, Corinne Da Silva, Carole Dossat, Frédérick Gavory, Shahinaz Gas, Julie Guy, Maud Haquelle, E'krame Jacoby, Olivier Jaillon, Arnaud Lemainque, Eric Pelletier, Gaëlle Samson, Mark Wessner, null null, Silvia G Acinas, Marta Royo-Llonch, Francisco Miguel Cornejo-Castillo, Ramiro Logares, Beatriz Fernández-Gómez, Chris Bowler, Guy Cochrane, Clara Amid, Petra Ten Hoopen, Colomban De Vargas, Nigel Grimsley, Elodie Desgranges, Stefanie Kandels-Lewis, Hiroyuki Ogata, Nicole Poulton, Michael E Sieracki, Ramunas Stepanauskas, Matthew B Sullivan, Jennifer R Brum, Melissa B Duhaime, Bonnie T Poulos, Bonnie L Hurwitz, null null, Stéphane Pesant, Eric Karsenti, Patrick Wincker
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition. Scientific data 4 (2017)
Sarahi L Garcia, Sarah L R Stevens, Benjamin Crary, Manuel Martinez-Garcia, Ramunas Stepanauskas, Tanja Woyke, Susannah G Tringe, Siv G E Andersson, Stefan Bertilsson, Rex R Malmstrom, Katherine D McMahon
Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations. The ISME journal 12 (3) (2017)
William H Wilson, Ilana C Gilg, Mohammad Moniruzzaman, Erin K Field, Sergey Koren, Gary R LeCleir, Joaquín Martínez Martínez, Nicole J Poulton, Brandon K Swan, Ramunas Stepanauskas, Steven W Wilhelm
Genomic exploration of individual giant ocean viruses. The ISME journal 11 (8) (2017)
Nadav Kashtan, Sara E Roggensack, Jessie W Berta-Thompson, Maor Grinberg, Ramunas Stepanauskas, Sallie W Chisholm
Fundamental differences in diversity and genomic population structure between Atlantic and Pacific Prochlorococcus. The ISME journal 11 (9) (2017)
Jinlyung Choi, Fan Yang, Ramunas Stepanauskas, Erick Cardenas Poire, Aaron Garoutte, Ryan Williams, Jared Flater, James M Tiedje, Kirsten S Hofmockel, Brian Gelder, Adina Howe
Strategies to improve reference databases for soil microbiomes. The ISME journal 11 (4) (2016)
Stefan Dyksma, Kerstin Bischof, Bernhard M Fuchs, Katy Hoffmann, Dimitri Meier, Anke Meyerdierks, Petra Pjevac, David Probandt, Michael Richter, Ramunas Stepanauskas, Marc Mußmann
Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments. The ISME journal 10 (8) (2016)
Alexander Eiler, Rhiannon Mondav, Lucas Sinclair, Leyden Fernandez-Vidal, Douglas G Scofield, Patrick Schwientek, Manuel Martinez-Garcia, David Torrents, Katherine D McMahon, Siv Ge Andersson, Ramunas Stepanauskas, Tanja Woyke, Stefan Bertilsson
Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria. The ISME journal 10 (8) (2016)
David Kamanda Ngugi, Jochen Blom, Ramunas Stepanauskas, Ulrich Stingl
Diversification and niche adaptations of Nitrospina-like bacteria in the polyextreme interfaces of Red Sea brines. The ISME journal 10 (6) (2015)

Ramunas Stepanauskas.css-eqlu8i{font-size:small;padding-left:4px;} (R Massana, Ramunas Stepanauskus)

Publication Activity (10 Years)

Top Topics

Top Venues

Ramunas Stepanauskas (R Massana, Ramunas Stepanauskus)