Klaus-Peter Koepfli (Klaus-Peter Koepfi)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 27

Top Topics

Angiotensin Converting Enzyme

Genetic Diversity

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Evolutionary applications

Nature genetics

This page only lists publications with an associated author ORCID identifier.

Publications

Theodore S Kalbfleisch, Stephanie D McKay, Brenda M Murdoch, David L Adelson, Diego Almansa-Villa, Gabrielle M Becker, Linda M Beckett, María José Benítez-Galeano, Fernando Biase, Theresa M Casey, Edward Boyi Chuong, Emily Clark, Shannon M Clarke, Noelle Cockett, Christine Couldrey, Brian W Davis, Christine G Elsik, Thomas Faraut, Yahui Gao, Carine Genet, Patrick G S Grady, Jonathan Green, Richard Green, Dai-Lu Guan, Darren Erich Hagen, Gabrielle A Hartley, Michael P Heaton, Savannah J Hoyt, Wen Huang, Erich Jarvis, Jenna Kalleberg, Hasan Khatib, Klaus-Peter Koepfli, James Eugene Koltes, Sergey Koren, Christa Kuehn, Tosso Leeb, Alexander S Leonard, George E Liu, Wai Yee Low, Hunter McConnell, Kathryn McRae, Karen Miga, Michelle Mousel, Holly Neibergs, Temitayo Olagunju, Matt Pennell, Bruna Petry, Mirjam Pewsner, Adam M Phillippy, Brandon D Pickett, Paulene Pineda, Tamara Potapova, Satyanarayana Rachagani, Arang Rhie, Monique Rijnkels, Annie Robic, Nelida Rodriguez Osorio, Yana Safonova, Gustavo Schettini, Robert D Schnabel, Nagabhishek Sirpu Natesh, Morgan R Stegemiller, Jessica Storer, Paul Stothard, Caleb Stull, Gwenola Tosser-Klopp, German Matias Traglia, Christopher K Tuggle, Curtis P Van Tassell, Corey T Watson, Rosemarie Weikard, Klaus Wimmers, Shangqian Xie, Liu Yang, Timothy P L Smith, Rachel J O'Neill, Benjamin D Rosen
The Ruminant Telomere-to-Telomere (RT2T) Consortium. Nature genetics 56 (8) (2024)
Prateek Dey, Swapna Devi Ray, Venkata Hanumat Sastry Kochiganti, Budhan S Pukazhenthi, Klaus-Peter Koepfli, Ram Pratap Singh
Mitogenomic Insights into the Evolution, Divergence Time, and Ancestral Ranges of Coturnix Quails. Genes 15 (6) (2024)
Samantha Pasciullo Boychuck, Lara J Brenner, Calypso N Gagorik, Juliann T Schamel, Stacy Baker, Elton Tran, Bridgett M vonHoldt, Klaus-Peter Koepfli, Jesus E Maldonado, Alexandra L DeCandia
The gut microbiomes of Channel Island foxes and island spotted skunks exhibit fine-scale differentiation across host species and island populations. Ecology and evolution 14 (2) (2024)
Theodore S Kalbfleisch, Stephanie D McKay, Brenda M Murdoch, David L Adelson, Diego Almansa-Villa, Gabrielle M Becker, Linda M Beckett, María José Benítez-Galeano, Fernando Biase, Theresa M Casey, Edward Boyi Chuong, Emily Clark, Shannon M Clarke, Noelle Cockett, Christine Couldrey, Brian W Davis, Christine G Elsik, Thomas Faraut, Yahui Gao, Carine Genet, Patrick G S Grady, Jonathan Green, Richard Green, Dai-Lu Guan, Darren Erich Hagen, Gabrielle A Hartley, Michael P Heaton, Savannah J Hoyt, Wen Huang, Erich Jarvis, Jenna Kalleberg, Hasan Khatib, Klaus-Peter Koepfli, James Eugene Koltes, Sergey Koren, Christa Kuehn, Tosso Leeb, Alexander S Leonard, George E Liu, Wai Yee Low, Hunter McConnell, Kathryn McRae, Karen Miga, Michelle Mousel, Holly Neibergs, Temitayo Olagunju, Matt Pennell, Bruna Petry, Mirjam Pewsner, Adam M Phillippy, Brandon D Pickett, Paulene Pineda, Tamara Potapova, Satyanarayana Rachagani, Arang Rhie, Monique Rijnkels, Annie Robic, Nelida Rodriguez Osorio, Yana Safonova, Gustavo Schettini, Robert D Schnabel, Nagabhishek Sirpu Natesh, Morgan R Stegemiller, Jessica Storer, Paul Stothard, Caleb Stull, Gwenola Tosser-Klopp, German Matias Traglia, Christopher K Tuggle, Curtis P Van Tassell, Corey T Watson, Rosemarie Weikard, Klaus Wimmers, Shangqian Xie, Liu Yang, Timothy P L Smith, Rachel J O'Neill, Benjamin D Rosen
The Ruminant Telomere-to-Telomere (RT2T) Consortium. Nature genetics (2024)
Stavi R Tennenbaum, Robyn Bortner, Colleen Lynch, Rachel M Santymire, Adrienne Crosier, Jenny Santiestevan, Paul Marinari, Budhan S Pukazhenthi, Pierre Comizzoli, Melissa T R Hawkins, Jesus E Maldonado, Klaus-Peter Koepfli, Bridgett M vonHoldt, Alexandra L DeCandia
Epigenetic changes to gene pathways linked to male fertility in ex situ black-footed ferrets. Evolutionary applications 17 (1) (2024)
Stavi R Tennenbaum, Robyn Bortner, Colleen Lynch, Rachel M Santymire, Adrienne Crosier, Jenny Santiestevan, Paul Marinari, Budhan S Pukazhenthi, Pierre Comizzoli, Melissa T R Hawkins, Jesus E Maldonado, Klaus-Peter Koepfli, Bridgett M vonHoldt, Alexandra L DeCandia
Epigenetic changes to gene pathways linked to male fertility in ex situ black-footed ferrets. Evolutionary applications 17 (1) (2024)
Prateek Dey, Swapna Devi Ray, Venkata Hanumat Sastry Kochiganti, Budhan S Pukazhenthi, Klaus-Peter Koepfli, Ram Pratap Singh
Mitogenomic Insights into the Evolution, Divergence Time, and Ancestral Ranges of Coturnix Quails. Genes 15 (6) (2024)
Samantha Pasciullo Boychuck, Lara J Brenner, Calypso N Gagorik, Juliann T Schamel, Stacy Baker, Elton Tran, Bridgett M vonHoldt, Klaus-Peter Koepfli, Jesus E Maldonado, Alexandra L DeCandia
The gut microbiomes of Channel Island foxes and island spotted skunks exhibit fine-scale differentiation across host species and island populations. Ecology and evolution 14 (2) (2024)
Emily Humble, Martin Adam Stoffel, Kara L Dicks, Alex D Ball, Rebecca M Gooley, Justin Chuven, Ricardo Pusey, Mohammed Al Remeithi, Klaus-Peter Koepfli, Budhan Pukazhenthi, Helen Senn, Rob Ogden
Conservation management strategy impacts inbreeding and mutation load in scimitar-horned oryx. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Emily Humble, Martin Adam Stoffel, Kara L Dicks, Alex D Ball, Rebecca M Gooley, Justin Chuven, Ricardo Pusey, Mohammed Al Remeithi, Klaus-Peter Koepfli, Budhan Pukazhenthi, Helen Senn, Rob Ogden
Conservation management strategy impacts inbreeding and mutation load in scimitar-horned oryx. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Aliya Yakupova, Andrey Tomarovsky, Azamat Totikov, Violetta R Beklemisheva, Maria Logacheva, Polina L Perelman, Aleksey S Komissarov, Pavel Dobrynin, Ksenia Krasheninnikova, Gaik Tamazian, Natalia A Serdyukova, Mike Rayko, Tatiana Bulyonkova, Nikolay Cherkasov, Vladimir Pylev, Vladimir Peterfeld, Aleksey Penin, Elena Balanovska, Alla L Lapidus, null Dna Zoo Consortium, Stephen J OBrien, Alexander S Graphodatsky, Klaus-Peter Koepfli, Sergei Kliver
Chromosome-Length Assembly of the Baikal Seal ( Pusa sibirica ) Genome Reveals a Historically Large Population Prior to Isolation in Lake Baikal. Genes 14 (3) (2023)
Emily Humble, Martin Adam Stoffel, Kara L Dicks, Alex D Ball, Rebecca M Gooley, Justin Chuven, Ricardo Pusey, Mohammed Al Remeithi, Klaus-Peter Koepfli, Budhan Pukazhenthi, Helen Senn, Rob Ogden
Conservation management strategy impacts inbreeding and mutation load in scimitar-horned oryx. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Emily Humble, Martin Adam Stoffel, Kara L Dicks, Alex D Ball, Rebecca M Gooley, Justin Chuven, Ricardo Pusey, Mohammed Al Remeithi, Klaus-Peter Koepfli, Budhan Pukazhenthi, Helen Senn, Rob Ogden
Conservation management strategy impacts inbreeding and mutation load in scimitar-horned oryx. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Emily Humble, Martin Adam Stoffel, Kara L Dicks, Alex D Ball, Rebecca M Gooley, Justin Chuven, Ricardo Pusey, Mohammed Al Remeithi, Klaus-Peter Koepfli, Budhan Pukazhenthi, Helen Senn, Rob Ogden
Conservation management strategy impacts inbreeding and mutation load in scimitar-horned oryx. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Aliya Yakupova, Andrey Tomarovsky, Azamat Totikov, Violetta R Beklemisheva, Maria Logacheva, Polina L Perelman, Aleksey S Komissarov, Pavel Dobrynin, Ksenia Krasheninnikova, Gaik Tamazian, Natalia A Serdyukova, Mike Rayko, Tatiana Bulyonkova, Nikolay Cherkasov, Vladimir Pylev, Vladimir Peterfeld, Aleksey Penin, Elena Balanovska, Alla L Lapidus, null Dna Zoo Consortium, Stephen J OBrien, Alexander S Graphodatsky, Klaus-Peter Koepfli, Sergei Kliver
Chromosome-Length Assembly of the Baikal Seal ( Pusa sibirica ) Genome Reveals a Historically Large Population Prior to Isolation in Lake Baikal. Genes 14 (3) (2023)
Emily Humble, Martin Adam Stoffel, Kara L Dicks, Alex D Ball, Rebecca M Gooley, Justin Chuven, Ricardo Pusey, Mohammed Al Remeithi, Klaus-Peter Koepfli, Budhan Pukazhenthi, Helen Senn, Rob Ogden
Conservation management strategy impacts inbreeding and mutation load in scimitar-horned oryx. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Emily Humble, Martin Adam Stoffel, Kara L Dicks, Alex D Ball, Rebecca M Gooley, Justin Chuven, Ricardo Pusey, Mohammed Al Remeithi, Klaus-Peter Koepfli, Budhan Pukazhenthi, Helen Senn, Rob Ogden
Conservation management strategy impacts inbreeding and mutation load in scimitar-horned oryx. Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Aliya Yakupova, Andrey Tomarovsky, Azamat Totikov, Violetta R Beklemisheva, Maria Logacheva, Polina L Perelman, Aleksey S Komissarov, Pavel Dobrynin, Ksenia Krasheninnikova, Gaik Tamazian, Natalia A Serdyukova, Mike Rayko, Tatiana Bulyonkova, Nikolay Cherkasov, Vladimir Pylev, Vladimir Peterfeld, Aleksey Penin, Elena Balanovska, Alla L Lapidus, null Dna Zoo Consortium, Stephen J OBrien, Alexander S Graphodatsky, Klaus-Peter Koepfli, Sergei Kliver
Chromosome-Length Assembly of the Baikal Seal ( Pusa sibirica ) Genome Reveals a Historically Large Population Prior to Isolation in Lake Baikal. Genes 14 (3) (2023)
Annabel C Beichman, Pooneh Kalhori, Christopher C Kyriazis, Amber A DeVries, Sergio F Nigenda-Morales, Gisela Heckel, Yolanda Schramm, Andrés Moreno-Estrada, Douglas J Kennett, Mark Hylkema, James Bodkin, Klaus-Peter Koepfli, Kirk E Lohmueller, Robert K Wayne
Genomic analyses reveal range-wide devastation of sea otter populations. Molecular ecology (2021)
Sofia M Kolchanova, Aleksey S Komissarov, Sergei Kliver, Anyi Mazo-Vargas, Yashira Afanador, Jafet Velez-Valentín, Ricardo Valentín de la Rosa, Stephanie Castro-Marquez, Israel Rivera-Colon, Audrey J Majeske, Walter W Wolfsberger, Taylor Hains, André Corvelo, Juan-Carlos Martinez-Cruzado, Travis C Glenn, Orlando Robinson, Klaus-Peter Koepfli, Taras K Oleksyk
Molecular Phylogeny and Evolution of Amazon Parrots in the Greater Antilles. Genes 12 (4) (2021)
Elisabeth Hempel, Michael V Westbury, José H Grau, Alexandra Trinks, Johanna L A Paijmans, Sergei Kliver, Axel Barlow, Frieder Mayer, Johannes Müller, Lei Chen, Klaus-Peter Koepfli, Michael Hofreiter, Faysal Bibi
Diversity and Paleodemography of the Addax (Addax nasomaculatus), a Saharan Antelope on the Verge of Extinction. Genes 12 (8) (2021)
Azamat Totikov, Andrey Tomarovsky, Dmitry Yu Prokopov, Aliya Yakupova, Tatiana Bulyonkova, Lorena Derezanin, Dmitry Rasskazov, Walter W Wolfsberger, Klaus-Peter Koepfli, Tarás K Oleksyk, Sergei Kliver
Chromosome-Level Genome Assemblies Expand Capabilities of Genomics for Conservation Biology. Genes 12 (9) (2021)
Jana R Wold, Klaus-Peter Koepfli, Stephanie J Galla, David A Eccles, Carolyn J Hogg, Marissa F Le Lec, Joseph Guhlin, Anna W Santure, Tammy E Steeves
Expanding the conservation genomics toolbox: Incorporating structural variants to enhance genomic studies for species of conservation concern. Molecular ecology 30 (23) (2021)
Joana Damas, Graham M Hughes, Kathleen C Keough, Corrie A Painter, Nicole S Persky, Marco Corbo, Michael Hiller, Klaus-Peter Koepfli, Andreas R Pfenning, Huabin Zhao, Diane P Genereux, Ross Swofford, Katherine S Pollard, Oliver A Ryder, Martin T Nweeia, Kerstin Lindblad-Toh, Emma C Teeling, Elinor K Karlsson, Harris A Lewin
Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates. Proceedings of the National Academy of Sciences of the United States of America 117 (36) (2020)
Marc de Manuel, Ross Barnett, Marcela Sandoval-Velasco, Nobuyuki Yamaguchi, Filipe Garrett Vieira, M Lisandra Zepeda Mendoza, Shi-Ping Liu, Michael D Martin, Mikkel-Holger S Sinding, Sarah S T Mak, Christian Carøe, Shanlin Liu, Chunxue Guo, Jiao Zheng, Grant Zazula, Gennady Baryshnikov, Eduardo Eizirik, Klaus-Peter Koepfli, Warren E Johnson, Agostinho Antunes, Thomas Arn Hansen, Shyam Gopalakrishnan, Greger Larson, Huanming Yang, Stephen J O'Brien, Anders J Hansen, Guojie Zhang, Tomas Marques-Bonet, Marcus Thomas Pius Gilbert
The evolutionary history of extinct and living lions. Proceedings of the National Academy of Sciences of the United States of America 117 (20) (2020)
Rebecca M Gooley, Gaik Tamazian, Susette Castañeda-Rico, Katherine R Murphy, Pavel Dobrynin, Gina M Ferrie, Holly Haefele, Jesús E Maldonado, David E Wildt, Budhan S Pukazhenthi, Cody W Edwards, Klaus-Peter Koepfli
Comparison of genomic diversity and structure of sable antelope (Hippotragus niger) in zoos, conservation centers, and private ranches in North America. Evolutionary applications 13 (8) (2020)
Klaus-Peter Koepfli, Gaik Tamazian, David Wildt, Pavel Dobrynin, Changhoon Kim, Paul B Frandsen, Raquel Godinho, Andrey A Yurchenko, Aleksey Komissarov, Ksenia Krasheninnikova, Sergei Kliver, Sofia Kolchanova, Margarida Gonçalves, Miguel Carneiro, Pedro Vaz Pinto, Nuno Ferrand, Jesús E Maldonado, Gina M Ferrie, Leona Chemnick, Oliver A Ryder, Warren E Johnson, Pierre Comizzoli, Stephen J O'Brien, Budhan S Pukazhenthi
Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations. G3 (Bethesda, Md.) 9 (6) (2019)