Katrina A Lythgoe (Katrina Lythgoe)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 20

Top Topics

Antimicrobial Resistance

Respiratory Syndrome Coronavirus

Machine Learning

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Roberto Cahuantzi, Katrina A Lythgoe, Ian Hall, Lorenzo Pellis, Thomas House
Unsupervised identification of significant lineages of SARS-CoV-2 through scalable machine learning methods. Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature 626 (8001) (2024)
Roberto Cahuantzi, Katrina A Lythgoe, Ian Hall, Lorenzo Pellis, Thomas House
Unsupervised identification of significant lineages of SARS-CoV-2 through scalable machine learning methods. Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature 626 (8001) (2024)
Roberto Cahuantzi, Katrina A Lythgoe, Ian Hall, Lorenzo Pellis, Thomas House
Unsupervised identification of significant lineages of SARS-CoV-2 through scalable machine learning methods. Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Roberto Cahuantzi, Katrina A Lythgoe, Ian Hall, Lorenzo Pellis, Thomas House
Unsupervised identification of significant lineages of SARS-CoV-2 through scalable machine learning methods. Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Roberto Cahuantzi, Katrina A Lythgoe, Ian Hall, Lorenzo Pellis, Thomas House
Unsupervised identification of significant lineages of SARS-CoV-2 through scalable machine learning methods. Proceedings of the National Academy of Sciences of the United States of America 121 (12) (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature 626 (8001) (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature 626 (8001) (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature 626 (8001) (2024)
Katrina A Lythgoe, Tanya Golubchik, Matthew Hall, Thomas A House, Roberto Cahuantzi, George MacIntyre-Cockett, Helen Fryer, Laura Thomson, Anel Nurtay, Mahan Ghafani, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Adnan Tariq, null null, null null, Christophe Fraser, Ian Diamond, Jeff Barrett, Ann Sarah Walker, David Bonsall
Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey. Proceedings. Biological sciences 290 (2009) (2023)
Lele Zhao, Matthew D Hall, Mariateresa de Cesare, George MacIntyre-Cockett, Katrina A Lythgoe, Christophe Fraser, David G Bonsall, Tanya Golubchik, null null, Luca Ferretti
The mutational spectrum of SARS-CoV-2 genomic and antigenomic RNA. Proceedings. Biological sciences 289 (1987) (2022)
Christian Julián Villabona-Arenas, Stéphane Hué, James A C Baxter, Matthew Hall, Katrina A Lythgoe, John Bradley, Katherine E Atkins
Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs. Proceedings of the National Academy of Sciences of the United States of America 119 (38) (2022)
Baisheng Li, Aiping Deng, Kuibiao Li, Yao Hu, Zhencui Li, Yaling Shi, Qianling Xiong, Zhe Liu, Qianfang Guo, Lirong Zou, Huan Zhang, Meng Zhang, Fangzhu Ouyang, Juan Su, Wenzhe Su, Jing Xu, Huifang Lin, Jing Sun, Jinju Peng, Huiming Jiang, Pingping Zhou, Ting Hu, Min Luo, Yingtao Zhang, Huanying Zheng, Jianpeng Xiao, Tao Liu, Mingkai Tan, Rongfei Che, Hanri Zeng, Zhonghua Zheng, Yushi Huang, Jianxiang Yu, Lina Yi, Jie Wu, Jingdiao Chen, Haojie Zhong, Xiaoling Deng, Min Kang, Oliver George Pybus, Matthew D Hall, Katrina A Lythgoe, Yan Li, Jun Yuan, Jianfeng He, Jing Lu
Viral infection and transmission in a large, well-traced outbreak caused by the SARS-CoV-2 Delta variant. Nature communications 13 (1) (2022)
Louise Dyson, Edward M Hill, Sam Moore, Jacob Curran-Sebastian, Michael J Tildesley, Katrina A Lythgoe, Thomas A House, Lorenzo Pellis, Matt J Keeling
Possible future waves of SARS-CoV-2 infection generated by variants of concern with a range of characteristics. Nature communications 12 (1) (2021)
Katrina A Lythgoe, Matthew D Hall, Luca Ferretti, Mariateresa de Cesare, George MacIntyre-Cockett, Amy Trebes, Monique I Andersson, Newton Otecko, Emma Louise Wise, Nathan A Moore, Jessica Lynch, Stephen P Kidd, Nicholas Cortes, Matilde Mori, Rebecca Williams, Gabrielle Vernet, Anita Justice, Angie Green, Samuel M Nicholls, M Azim Ansari, Lucie Abeler-Dörner, Catrin E Moore, Timothy E A Peto, David W Eyre, Robert Shaw, Peter Simmonds, David Buck, John A Todd, null null, Thomas Richard Connor, Shirin Ashraf, Ana da Silva Filipe, James G Shepherd, Emma C Thomson, null null, David G Bonsall, Christophe Fraser, Tanya Golubchik
SARS-CoV-2 within-host diversity and transmission. Science (New York, N.Y.) 372 (6539) (2021)
Christopher J R Illingworth, Jayna Ragwani, David Serwadda, Nelson K Sewankambo, Merlin L Robb, Michael A Eller, Andrew R Redd, Thomas C Quinn, Katrina A Lythgoe
A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection. PLoS pathogens 16 (6) (2020)
Robin N Thompson, Chris Wymant, Rebecca A Spriggs, Jayna Raghwani, Christophe Fraser, Katrina A Lythgoe
Link between the numbers of particles and variants founding new HIV-1 infections depends on the timing of transmission. Virus evolution 5 (1) (2019)
Jayna Ragwani, Andrew D Redd, Andrew F Longosz, Chieh-Hsi Wu, David Serwadda, Craig Martens, Joseph Kagaayi, Nelson Sewankambo, Stephen F Porcella, Mary K Grabowski, Thomas C Quinn, Michael A Eller, Leigh Anne Eller, Fred Wabwire-Mangen, Merlin L Robb, Christophe Fraser, Katrina A Lythgoe
Evolution of HIV-1 within untreated individuals and at the population scale in Uganda. PLoS pathogens 14 (7) (2018)