Matthew D Hall (Matthew Hall)

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 17

Top Venues

Nature

Science (New York, N.Y.)

eLife

PLoS computational biology

This page only lists publications with an associated author ORCID identifier.

Publications

Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature 626 (8001) (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature 626 (8001) (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature 626 (8001) (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature 626 (8001) (2024)
Mahan Ghafari, Matthew D Hall, Tanya Golubchik, Daniel Ayoubkhani, Thomas A House, George MacIntyre-Cockett, Helen R Fryer, Laura Thomson, Anel Nurtay, Steven A Kemp, Luca Ferretti, David Buck, Angie Green, Amy Trebes, Paolo Piazza, Lorne J Lonie, Ruth Studley, Emma Rourke, Darren L Smith, Matthew Bashton, Andrew Nelson, Matthew Crown, Clare McCann, Gregory R Young, Rui Andre Nunes Dos Santos, Zack Richards, Mohammad Adnan Tariq, Roberto Cahuantzi, null null, null null, null null, Jeffrey C Barrett, Christophe Fraser, David Bonsall, Ann Sarah Walker, Katrina A Lythgoe
Prevalence of persistent SARS-CoV-2 in a large community surveillance study. Nature 626 (8001) (2024)
Mélodie Monod, Andrea Brizzi, Ronald M Galiwango, Robert Ssekubugu, Yu Chen, Xiaoyue Xi, Edward Nelson Kankaka, Victor Ssempijja, Lucie Abeler Dörner, Adam Akullian, Alexandra Blenkinsop, David Bonsall, Larry W Chang, Shozen Dan, Christophe Fraser, Tanya Golubchik, Ronald H Gray, Matthew D Hall, Jade C Jackson, Godfrey Kigozi, Oliver Laeyendecker, Lisa A Mills, Thomas C Quinn, Steven J Reynolds, John S Santelli, Nelson K Sewankambo, Simon Ef Spencer, Joseph Ssekasanvu, Laura Thomson, Maria J Wawer, David Serwadda, Peter Godfrey-Faussett, Joseph Kagaayi, M Kate Grabowski, Oliver Ratmann
Growing gender disparity in HIV infection in Africa: sources and policy implications. medRxiv : the preprint server for health sciences (2023)
Mélodie Monod, Andrea Brizzi, Ronald Moses Galiwango, Robert Ssekubugu, Yu Chen, Xiaoyue Xi, Edward Nelson Kankaka, Victor Ssempijja, Lucie Abeler-Dörner, Adam Akullian, Alexandra Blenkinsop, David Bonsall, Larry W Chang, Shozen Dan, Christophe Fraser, Tanya Golubchik, Ronald H Gray, Matthew D Hall, Jade C Jackson, Godfrey Kigozi, Oliver Laeyendecker, Lisa A Mills, Thomas C Quinn, Steven J Reynolds, John S Santelli, Nelson K Sewankambo, Simon E F Spencer, Joseph Ssekasanvu, Laura Thomson, Maria J Wawer, David Serwadda, Peter Godfrey-Faussett, Joseph Kagaayi, M Kate Grabowski, Oliver Ratmann, null null, null null
Longitudinal population-level HIV epidemiologic and genomic surveillance highlights growing gender disparity of HIV transmission in Uganda. Nature microbiology (2023)
Chris Wymant, Daniela Bezemer, François Blanquart, Luca Ferretti, Astrid Gall, Matthew D Hall, Tanya Golubchik, Margreet Bakker, Swee Hoe Ong, Lele Zhao, David G Bonsall, Mariateresa de Cesare, George MacIntyre-Cockett, Lucie Abeler-Dörner, Jan Albert, Norbert Bannert, Jacques Fellay, Mary Kathryn Grabowski, Barbara Gunsenheimer-Bartmeyer, Huldrych F Gunthard, Pia Kivelä, Roger D Kouyos, Oliver Laeyendecker, Laurence Meyer, Kholoud Porter, Matti Ristola, Ard van Sighem, Ben Berkhout, Paul Kellam, Marion Cornelissen, Peter Reiss, Christophe Fraser, null null, null null
A highly virulent variant of HIV-1 circulating in the Netherlands. Science (New York, N.Y.) 375 (6580) (2022)
Bronner P Gonçalves, Matthew D Hall, Waasila Jassat, Valeria Balan, Srinivas Murthy, Christiana Kartsonaki, Malcolm G Semple, Amanda Rojek, Joaquín Baruch, Luis Felipe Reyes, Abhishek Dasgupta, Jake Dunning, Barbara Wanjiru Citarella, Mark Pritchard, Alejandro Martín-Quiros, Uluhan Sili, John Kenneth Baillie, Diptesh Aryal, Yaseen Arabi, Aasiyah Rashan, Andrea Angheben, Janice Caoili, François Martin Carrier, Ewen M Harrison, Joan Gómez-Junyent, Claudia Figueiredo-Mello, James Joshua Douglas, Mohammed Basri Mat-Nor, Yock Ping Chow, Xin Ci Wong, Silvia Bertagnolio, Soe Soe Thwin, Anca Streinu-Cercel, Leonardo Salazar, Asgar Rishu, Rajavardhan Rangappa, David S Y Ong, Madiha Hashmi, Gail Carson, Janet Diaz, Rob Fowler, Moritz U G Kraemer, Evert-Jan Wils, Peter Horby, Laura Merson, Piero L Olliaro, null null
An international observational study to assess the impact of the Omicron variant emergence on the clinical epidemiology of COVID-19 in hospitalised patients. eLife 11 (2022)
Lele Zhao, Matthew D Hall, Mariateresa de Cesare, George MacIntyre-Cockett, Katrina A Lythgoe, Christophe Fraser, David G Bonsall, Tanya Golubchik, null null, Luca Ferretti
The mutational spectrum of SARS-CoV-2 genomic and antigenomic RNA. Proceedings. Biological sciences 289 (1987) (2022)
Baisheng Li, Aiping Deng, Kuibiao Li, Yao Hu, Zhencui Li, Yaling Shi, Qianling Xiong, Zhe Liu, Qianfang Guo, Lirong Zou, Huan Zhang, Meng Zhang, Fangzhu Ouyang, Juan Su, Wenzhe Su, Jing Xu, Huifang Lin, Jing Sun, Jinju Peng, Huiming Jiang, Pingping Zhou, Ting Hu, Min Luo, Yingtao Zhang, Huanying Zheng, Jianpeng Xiao, Tao Liu, Mingkai Tan, Rongfei Che, Hanri Zeng, Zhonghua Zheng, Yushi Huang, Jianxiang Yu, Lina Yi, Jie Wu, Jingdiao Chen, Haojie Zhong, Xiaoling Deng, Min Kang, Oliver George Pybus, Matthew D Hall, Katrina A Lythgoe, Yan Li, Jun Yuan, Jianfeng He, Jing Lu
Viral infection and transmission in a large, well-traced outbreak caused by the SARS-CoV-2 Delta variant. Nature communications 13 (1) (2022)
Robert Hinch, William J M Probert, Anel Nurtay, Michelle Kendall, Chris Wymant, Matthew D Hall, Katrina Lythgoe, Ana Bulas Cruz, Lele Zhao, Andrea Stewart, Luca Ferretti, Daniel Montero, James Warren, Nicole Mather, Matthew Abueg, Neo Wu, Olivier Legat, Katie Bentley, Thomas Mead, Kelvin Van-Vuuren, Dylan Feldner-Busztin, Tommaso Ristori, Anthony Finkelstein, David G Bonsall, Lucie Abeler-Dörner, Christophe Fraser
OpenABM-Covid19-An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing. PLoS computational biology 17 (7) (2021)
null null, Matthew D Hall, Joaquín Baruch, Gail Carson, Barbara Wanjiru Citarella, Andrew Dagens, Emmanuelle Dankwa, Christl A Donnelly, Jake Dunning, Martina Escher, Christiana Kartsonaki, Laura Merson, Mark Pritchard, Jia Wei, Peter W Horby, Amanda Rojek, Piero Luigi Olliaro
Ten months of temporal variation in the clinical journey of hospitalised patients with COVID-19: an observational cohort. eLife 10 (2021)
Katrina A Lythgoe, Matthew D Hall, Luca Ferretti, Mariateresa de Cesare, George MacIntyre-Cockett, Amy Trebes, Monique I Andersson, Newton Otecko, Emma Louise Wise, Nathan A Moore, Jessica Lynch, Stephen P Kidd, Nicholas Cortes, Matilde Mori, Rebecca Williams, Gabrielle Vernet, Anita Justice, Angie Green, Samuel M Nicholls, M Azim Ansari, Lucie Abeler-Dörner, Catrin E Moore, Timothy E A Peto, David W Eyre, Robert Shaw, Peter Simmonds, David Buck, John A Todd, null null, Thomas Richard Connor, Shirin Ashraf, Ana da Silva Filipe, James G Shepherd, Emma C Thomson, null null, David G Bonsall, Christophe Fraser, Tanya Golubchik
SARS-CoV-2 within-host diversity and transmission. Science (New York, N.Y.) 372 (6539) (2021)
Christian Julián Villabona-Arenas, Matthew D Hall, Katrina A Lythgoe, Stephen G Gaffney, Roland R Regoes, Stéphane Hué, Katherine E Atkins
Number of HIV-1 founder variants is determined by the recency of the source partner infection. Science (New York, N.Y.) 369 (6499) (2020)
Matthew D Hall, Matthew T G Holden, Pramot Srisomang, Weera Mahavanakul, Vanaporn Wuthiekanun, Direk Limmathurotsakul, Kay Fountain, Julian Parkhill, Emma K Nickerson, Sharon J Peacock, Christophe Fraser
Improved characterisation of MRSA transmission using within-host bacterial sequence diversity. eLife 8 (2019)

Matthew D Hall.css-eqlu8i{font-size:small;padding-left:4px;} (Matthew Hall)

Publication Activity (10 Years)

Top Topics

Top Venues

Matthew D Hall (Matthew Hall)