Markus Hafner

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 36

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Nucleic acids research

eLife

National Institutes of Health

Rheinische Friedrich Wilhelms Universitat Bonn (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

National Institutes of Health Nov 04 2019

United States

Senior Investigator :: NIAMS, Laboratory of Muscle Stem Cells and Gene Regulation

National Institutes of Health - Nov 04 2019

United States

Tenure-Track Investigator :: NIAMS, Laboratory of Muscle Stem Cells and Gene Regulation

Rockefeller University

United States

Postdoctoral Fellow :: Laboratory of RNA Molecular Biology

Education History

Rheinische Friedrich Wilhelms Universitat Bonn - Jun 15 2007

Germany

PHD :: Department for Organic Chemistry and Biochemistry

Rheinische Friedrich Wilhelms Universitat Bonn

Germany

MSC :: Department for Chemistry and Biochemistry

Publications

Zohirul Islam, Ahsan Polash, Masataka Suzawa, Bryan Chim, Skyler Kuhn, Sabrina Sultana, Nicholas Cutrona, Patrick T Smith, Juraj Kabat, Sundar Ganesan, Amir Foroushani, Markus Hafner, Stefan A Muljo
MATRIN3 deficiency triggers autoinflammation via cGAS-STING activation. bioRxiv : the preprint server for biology (2024)
Zohirul Islam, Ahsan Polash, Masataka Suzawa, Bryan Chim, Skyler Kuhn, Sabrina Sultana, Nicholas Cutrona, Patrick T Smith, Juraj Kabat, Sundar Ganesan, Amir Foroushani, Markus Hafner, Stefan A Muljo
MATRIN3 deficiency triggers autoinflammation via cGAS-STING activation. bioRxiv : the preprint server for biology (2024)
Miriam Cipullo, Genís Valentín Gesé, Shreekara Gopalakrishna, Annika Krueger, Vivian Lobo, Maria A Pirozhkova, James Marks, Petra Páleníková, Dmitrii Shiriaev, Yong Liu, Jelena Misic, Yu Cai, Minh Duc Nguyen, Abubakar Abdelbagi, Xinping Li, Michal Minczuk, Markus Hafner, Daniel Benhalevy, Aishe A Sarshad, Ilian Atanassov, B Martin Hällberg, Joanna Rorbach
GTPBP8 plays a role in mitoribosome formation in human mitochondria. Nature communications 15 (1) (2024)
Miriam Cipullo, Genís Valentín Gesé, Shreekara Gopalakrishna, Annika Krueger, Vivian Lobo, Maria A Pirozhkova, James Marks, Petra Páleníková, Dmitrii Shiriaev, Yong Liu, Jelena Misic, Yu Cai, Minh Duc Nguyen, Abubakar Abdelbagi, Xinping Li, Michal Minczuk, Markus Hafner, Daniel Benhalevy, Aishe A Sarshad, Ilian Atanassov, B Martin Hällberg, Joanna Rorbach
GTPBP8 plays a role in mitoribosome formation in human mitochondria. Nature communications 15 (1) (2024)
Miriam Cipullo, Genís Valentín Gesé, Shreekara Gopalakrishna, Annika Krueger, Vivian Lobo, Maria A Pirozhkova, James Marks, Petra Páleníková, Dmitrii Shiriaev, Yong Liu, Jelena Misic, Yu Cai, Minh Duc Nguyen, Abubakar Abdelbagi, Xinping Li, Michal Minczuk, Markus Hafner, Daniel Benhalevy, Aishe A Sarshad, Ilian Atanassov, B Martin Hällberg, Joanna Rorbach
GTPBP8 plays a role in mitoribosome formation in human mitochondria. Nature communications 15 (1) (2024)
Ilias Skeparnias, Charles Bou-Nader, Dimitrios G Anastasakis, Lixin Fan, Yun-Xing Wang, Markus Hafner, Jinwei Zhang
Structural basis of MALAT1 RNA maturation and mascRNA biogenesis. Nature structural & molecular biology (2024)
Xiaojuan Fan, Tian-Gen Chang, Chuyun Chen, Markus Hafner, Zefeng Wang
Analysis of RNA translation with a deep learning architecture provides new insight into translation control. bioRxiv : the preprint server for biology (2024)
Myron K Gibert, Ying Zhang, Shekhar Saha, Pawel Marcinkiewicz, Collin Dube, Kadie Hudson, Yunan Sun, Sylwia Bednarek, Bilhan Chagari, Aditya Sarkar, Christian Roig-Laboy, Natalie Neace, Karim Saoud, Initha Setiady, Farina Hanif, David Schiff, Pankaj Kumar, Benjamin Kefas, Markus Hafner, Roger Abounader
A first comprehensive analysis of Transcribed Ultra Conserved Regions uncovers important regulatory functions of novel non-coding transcripts in gliomas. Research square (2024)
Xiaojuan Fan, Tian-Gen Chang, Chuyun Chen, Markus Hafner, Zefeng Wang
Analysis of RNA translation with a deep learning architecture provides new insight into translation control. bioRxiv : the preprint server for biology (2024)
Roger Abounader, Myron Gibert, Ying Zhang, Shekhar Saha, Pawel Marcinkiewicz, Collin Dube, Kadie Hudson, Yunan Sun, Sylwia Bednarek, Bilhan Chagari, Aditya Sarkar, Christian Roig-Laboy, Natalie Neace, Karim Saoud, Initha Setiady, Farina Hanif, David Schiff, Pankaj Kumar, Benjamin Kefas, Markus Hafner
A first comprehensive analysis of Transcribed Ultra Conserved Regions uncovers important regulatory functions of novel non-coding transcripts in gliomas. Research square (2024)
Zohirul Islam, Ahsan Polash, Masataka Suzawa, Bryan Chim, Skyler Kuhn, Sabrina Sultana, Nicholas Cutrona, Patrick T Smith, Juraj Kabat, Sundar Ganesan, Amir Foroushani, Markus Hafner, Stefan A Muljo
MATRIN3 deficiency triggers autoinflammation via cGAS-STING activation. bioRxiv : the preprint server for biology (2024)
Yingxiao Chen, Yanping Li, Roselyn S Dai, Jonathan C Savage, Ujwal Shinde, John Klimek, Larry L David, Emma A Young, Markus Hafner, Rosalie C Sears, Xiao-Xin Sun, Mu-Shui Dai
The ubiquitin-specific protease USP36 SUMOylates EXOSC10 and promotes the nucleolar RNA exosome function in rRNA processing. Nucleic acids research (2023)
Andrew J Heindel, Jeffrey W Brulet, Xiantao Wang, Michael W Founds, Adam H Libby, Dina L Bai, Michael C Lemke, David M Leace, Thurl E Harris, Markus Hafner, Ku-Lung Hsu
Chemoproteomic capture of RNA binding activity in living cells. Nature communications 14 (1) (2023)
Yingxiao Chen, Yanping Li, Roselyn S Dai, Jonathan C Savage, Ujwal Shinde, John Klimek, Larry L David, Emma A Young, Markus Hafner, Rosalie C Sears, Xiao-Xin Sun, Mu-Shui Dai
The ubiquitin-specific protease USP36 SUMOylates EXOSC10 and promotes the nucleolar RNA exosome function in rRNA processing. Nucleic acids research (2023)
Yingxiao Chen, Yanping Li, Roselyn S Dai, Jonathan C Savage, Ujwal Shinde, John Klimek, Larry L David, Emma A Young, Markus Hafner, Rosalie C Sears, Xiao-Xin Sun, Mu-Shui Dai
The ubiquitin-specific protease USP36 SUMOylates EXOSC10 and promotes the nucleolar RNA exosome function in rRNA processing. Nucleic acids research (2023)
Taeyun A Lee, Heonjong Han, Ahsan Habib Polash, Seok Keun Cho, Ji Won Lee, Eun A Ra, Eunhye Lee, Areum Park, Sujin Kang, Junhee L Choi, Ji Hyun Kim, Ji Eun Lee, Kyung-Won Min, Seong Wook Yang, Markus Hafner, Insuk Lee, Je-Hyun Yoon, Sungwook Lee, Boyoun Park
The nucleolus is the site for inflammatory RNA decay during infection. Nature communications 13 (1) (2022)
Dan Cheng, Kevin Semmens, Elizabeth McManus, Qingrong Chen, Daoud Meerzaman, Xiantao Wang, Markus Hafner, Brian A Lewis, Hidehisa Takahashi, Ballachanda N Devaiah, Anne Gegonne, Dinah S Singer
The nuclear transcription factor, TAF7, is a cytoplasmic regulator of protein synthesis. Science advances 7 (50) (2021)
Dimitrios G Anastasakis, Alexis Jacob, Parthena Konstantinidou, Kazuyuki Meguro, Duncan Claypool, Pavol Cekan, Astrid D Haase, Markus Hafner
A non-radioactive, improved PAR-CLIP and small RNA cDNA library preparation protocol. Nucleic acids research 49 (8) (2021)
Yutaka Enomoto, Peng Li, Lisa M Jenkins, Dimitrios Anastasakis, Gaelyn C Lyons, Markus Hafner, Warren J Leonard
Cytokine-enhanced cytolytic activity of exosomes from NK Cells. Cancer gene therapy (2021)
Daniel Benhalevy, Markus Hafner
Proximity-CLIP Provides a Snapshot of Protein-Occupied RNA Elements at Subcellular Resolution and Transcriptome-Wide Scale. Methods in molecular biology (Clifton, N.J.) 2166 (2021)
Mark Sauer, Nina Was, Thomas Ziegenhals, Xiantao Wang, Markus Hafner, Matthias Becker, Utz Fischer
The miR-26 family regulates neural differentiation-associated microRNAs and mRNAs by directly targeting REST. Journal of cell science 134 (12) (2021)
Rebecca S Brown, Dimitrios G Anastasakis, Markus Hafner, Margaret Kielian
Multiple capsid protein binding sites mediate selective packaging of the alphavirus genomic RNA. Nature communications 11 (1) (2020)
Bruna R Muys, Dimitrios G Anastasakis, Duncan Claypool, Lörinc Pongor, Xiao Ling Li, Ioannis Grammatikakis, Minxue Liu, Xiantao Wang, Kannanganattu V Prasanth, Mirit I Aladjem, Ashish Lal, Markus Hafner
The p53-induced RNA-binding protein ZMAT3 is a splicing regulator that inhibits the splicing of oncogenic CD44 variants in colorectal carcinoma. Genes & development 35 (1-2) (2020)
Min Guo, Yue Li, Yijun Su, Talley Lambert, Damian Dalle Nogare, Mark W Moyle, Leighton H Duncan, Richard Ikegami, Anthony Santella, Ivan Rey-Suarez, Daniel Green, Anastasia Beiriger, Jiji Chen, Harshad Vishwasrao, Sundar Ganesan, Victoria Prince, Jennifer C Waters, Christina M Annunziata, Markus Hafner, William A Mohler, Ajay B Chitnis, Arpita Upadhyaya, Ted B Usdin, Zhirong Bao, Daniel Colón-Ramos, Patrick La Riviere, Huafeng Liu, Yicong Wu, Hari Shroff
Rapid image deconvolution and multiview fusion for optical microscopy. Nature biotechnology 38 (11) (2020)
Amir K Foroushani, Bryan Chim, Madeline Wong, Andre Rastegar, Patrick T Smith, Saifeng Wang, Kent D Barbian, Craig Martens, Markus Hafner, Stefan A Muljo
Posttranscriptional regulation of human endogenous retroviruses by RNA-binding motif protein 4, RBM4. Proceedings of the National Academy of Sciences of the United States of America 117 (42) (2020)
Bruna Rodrigues Muys, Josane F Sousa, Jessica Rodrigues Plaça, Luíza Ferreira de Araújo, Aishe A Sarshad, Dimitrios G Anastasakis, Xiantao Wang, Xiao Ling Li, Greice Andreotti de Molfetta, Anelisa Ramão, Ashish Lal, Daniel Onofre Vidal, Markus Hafner, Wilson Araújo da Silva Junior
miR-450a Acts as a Tumor Suppressor in Ovarian Cancer by Regulating Energy Metabolism. Cancer research 79 (13) (2019)
Stephan P Rosshart, Jasmin Herz, Brian G Vassallo, Ashli Hunter, Morgan K Wall, Jonathan H Badger, John A McCulloch, Dimitrios G Anastasakis, Aishe A Sarshad, Irina Leonardi, Nicholas Collins, Joshua A Blatter, Seong-Ji Han, Samira Tamoutounour, Svetlana Potapova, Mark B Foster St Claire, Wuxing Yuan, Shurjo K Sen, Matthew S Dreier, Benedikt Hild, Markus Hafner, David Wang, Iliyan D Iliev, Yasmine Belkaid, Giorgio Trinchieri, Barbara Rehermann
Laboratory mice born to wild mice have natural microbiota and model human immune responses. Science (New York, N.Y.) 365 (6452) (2019)
Irina A Elcheva, Tyler Wood, Kathryn Chiarolanzio, Bryan Chim, Madeline Wong, Vikash Singh, Chethana P Gowda, Qingli Lu, Markus Hafner, Sinisa Dovat, Zhenqiu Liu, Stefan A Muljo, Vladimir S Spiegelman
RNA-binding protein IGF2BP1 maintains leukemia stem cell properties by regulating HOXB4, MYB, and ALDH1A1. Leukemia 34 (5) (2019)
Markus Sauer, Stefan A Juranek, James Marks, Alessio De Magis, Hinke G Kazemier, Daniel Hilbig, Daniel Benhalevy, Xiantao Wang, Markus Hafner, Katrin Paeschke
DHX36 prevents the accumulation of translationally inactive mRNAs with G4-structures in untranslated regions. Nature communications 10 (1) (2019)
Pooja Sharma, Sarah Alsharif, Karina Bursch, Swetha Parvathaneni, Dimitrios G Anastasakis, Joeffrey Chahine, Arwa Fallatah, Kevin Nicolas, Sudha Sharma, Markus Hafner, Bhaskar Kallakury, Byung Min Chung
Keratin 19 regulates cell cycle pathway and sensitivity of breast cancer cells to CDK inhibitors. Scientific reports 9 (1) (2019)
Daniel Benhalevy, Dimitrios G Anastasakis, Markus Hafner
Proximity-CLIP provides a snapshot of protein-occupied RNA elements in subcellular compartments. Nature methods 15 (12) (2018)
Jinhui Li, Xiantao Wang, William E Ackerman, Abel J Batty, Sean G Kirk, William M White, Xianxi Wang, Dimitrios G Anastasakis, Lobelia Samavati, Irina Alexandra Buhimschi, Leif D Nelin, Markus Hafner, Yusen Liu
Dysregulation of Lipid Metabolism in Mkp-1 Deficient Mice during Gram-Negative Sepsis. International journal of molecular sciences 19 (12) (2018)
Quan Q Gao, William E Putzbach, Andrea E Murmann, Siquan Chen, Aishe A Sarshad, Johannes M Peter, Elizabeth Thomas Bartom, Markus Hafner, Marcus E Peter
6mer seed toxicity in tumor suppressive microRNAs. Nature communications 9 (1) (2018)
William Putzbach, Ashley Haluck-Kangas, Quan Q Gao, Aishe A Sarshad, Elizabeth Thomas Bartom, Austin Stults, Abdul S Qadir, Markus Hafner, Marcus E Peter
CD95/Fas ligand mRNA is toxic to cells. eLife 7 (2018)
Sandy Mattijssen, Aneeshkumar G Arimbasseri, James R Iben, Sergei Gaidamakov, Joowon Lee, Markus Hafner, Richard J Maraia
LARP4 mRNA codon-tRNA match contributes to LARP4 activity for ribosomal protein mRNA poly(A) tail length protection. eLife 6 (2017)
William Putzbach, Quan Q Gao, Monal Patel, Stijn van Dongen, Ashley Haluck-Kangas, Aishe A Sarshad, Elizabeth T Bartom, Kwang-Youn A Kim, Denise M Scholtens, Markus Hafner, Jonathan C Zhao, Andrea E Murmann, Marcus E Peter
Many si/shRNAs can kill cancer cells by targeting multiple survival genes through an off-target mechanism. eLife 6 (2017)

Markus Hafner.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Markus Hafner