Nicholas M Luscombe (N M Luscombe)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 23

Top Topics

Saccharomyces Cerevisiae

Artificial Intelligence

High Throughput Sequencing

Top Venues

Nature communications

Genome research

Nucleic acids research

This page only lists publications with an associated author ORCID identifier.

Publications

Charles Plessy, Michael J Mansfield, Aleksandra Bliznina, Aki Masunaga, Charlotte West, Yongkai Tan, Andrew W Liu, Jan Grašič, María Sara Del Río Pisula, Gaspar Sánchez-Serna, Marc Fabrega-Torrus, Alfonso Ferrández-Roldán, Vittoria Roncalli, Pavla Navratilova, Eric M Thompson, Takeshi A Onuma, Hiroki Nishida, Cristian Cañestro, Nicholas M Luscombe
Extreme genome scrambling in marine planktonic Oikopleura dioica cryptic species. Genome research (2024)
Charles Plessy, Michael J Mansfield, Aleksandra Bliznina, Aki Masunaga, Charlotte West, Yongkai Tan, Andrew W Liu, Jan Grašič, María Sara Del Río Pisula, Gaspar Sánchez-Serna, Marc Fabrega-Torrus, Alfonso Ferrández-Roldán, Vittoria Roncalli, Pavla Navratilova, Eric M Thompson, Takeshi A Onuma, Hiroki Nishida, Cristian Cañestro, Nicholas M Luscombe
Extreme genome scrambling in marine planktonic Oikopleura dioica cryptic species. Genome research 34 (3) (2024)
Charles Plessy, Michael J Mansfield, Aleksandra Bliznina, Aki Masunaga, Charlotte West, Yongkai Tan, Andrew W Liu, Jan Grašič, María Sara Del Río Pisula, Gaspar Sánchez-Serna, Marc Fabrega-Torrus, Alfonso Ferrández-Roldán, Vittoria Roncalli, Pavla Navratilova, Eric M Thompson, Takeshi A Onuma, Hiroki Nishida, Cristian Cañestro, Nicholas M Luscombe
Extreme genome scrambling in marine planktonic Oikopleura dioica cryptic species. Genome research 34 (3) (2024)
Charles Plessy, Michael J Mansfield, Aleksandra Bliznina, Aki Masunaga, Charlotte West, Yongkai Tan, Andrew W Liu, Jan Grašič, María Sara Del Río Pisula, Gaspar Sánchez-Serna, Marc Fabrega-Torrus, Alfonso Ferrández-Roldán, Vittoria Roncalli, Pavla Navratilova, Eric M Thompson, Takeshi A Onuma, Hiroki Nishida, Cristian Cañestro, Nicholas M Luscombe
Extreme genome scrambling in marine planktonic Oikopleura dioica cryptic species. Genome research 34 (3) (2024)
Charles Plessy, Michael J Mansfield, Aleksandra Bliznina, Aki Masunaga, Charlotte West, Yongkai Tan, Andrew W Liu, Jan Grašič, María Sara Del Río Pisula, Gaspar Sánchez-Serna, Marc Fabrega-Torrus, Alfonso Ferrández-Roldán, Vittoria Roncalli, Pavla Navratilova, Eric M Thompson, Takeshi A Onuma, Hiroki Nishida, Cristian Cañestro, Nicholas M Luscombe
Extreme genome scrambling in marine planktonic Oikopleura dioica cryptic species. Genome research 34 (3) (2024)
Anob M Chakrabarti, Charlotte Capitanchik, Jernej Ule, Nicholas M Luscombe
clipplotr - a comparative visualisation and analysis tool for CLIP data. RNA (New York, N.Y.) (2023)
Anob M Chakrabarti, Ira Alexandra Iosub, Flora C Y Lee, Jernej Ule, Nicholas M Luscombe
A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3' UTR structure to RNA metabolism. Nucleic acids research (2023)
Andrew W Liu, Alejandro Villar-Briones, Nicholas M Luscombe, Charles Plessy
Automated phenol-chloroform extraction of high molecular weight genomic DNA for use in long-read single-molecule sequencing. F1000Research 11 (2022)
Oscar G Wilkins, Charlotte Capitanchik, Nicholas M Luscombe, Jernej Ule
Ultraplex: A rapid, flexible, all-in-one fastq demultiplexer. Wellcome open research 6 (2021)
Alessandro Bonetti, Federico Agostini, Ana Maria Suzuki, Kosuke Hashimoto, Giovanni Pascarella, Juliette Gimenez, Leonie Roos, Alex J Nash, Marco Ghilotti, Christopher J F Cameron, Matthew Valentine, Yulia A Medvedeva, Shuhei Noguchi, Eneritz Agirre, Kaori Kashi, null Samudyata, Joachim Luginbühl, Riccardo Cazzoli, Saumya Agrawal, Nicholas M Luscombe, Mathieu Blanchette, Takeya Kasukawa, Michiel de Hoon, Erik Arner, Boris Lenhard, Charles Plessy, Gonçalo Castelo-Branco, Valerio Orlando, Piero Carnici
Author Correction: RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions. Nature communications 12 (1) (2021)
Mahmoud-Reza Rafiee, Julian A Zagalak, Sviatoslav Sidorov, Sebastian Steinhauser, Karen Davey, Jernej Ule, Nicholas M Luscombe
Chromatin-contact atlas reveals disorder-mediated protein interactions and moonlighting chromatin-associated RBPs. Nucleic acids research (2021)
Adrien Leger, Paulo P Amaral, Luca Pandolfini, Charlotte Capitanchik, Federica Capraro, Valentina Miano, Valentina Migliori, Patrick Toolan-Kerr, Theodora Sideri, Anton J Enright, Konstantinos Tzelepis, Folkert Jacobus van Werven, Nicholas M Luscombe, Isaia Barbieri, Jernej Ule, Tomas W Fitzgerald, Ewan Birney, Tommaso Leonardi, Tony Kouzarides
RNA modifications detection by comparative Nanopore direct RNA sequencing. Nature communications 12 (1) (2021)
Lisa M Strittmatter, Charlotte Capitanchik, Andrew J Newman, Martina Hallegger, Christine M Norman, Sebastian M Fica, Chris Oubridge, Nicholas M Luscombe, Jernej Ule, Kiyoshi Nagai
psiCLIP reveals dynamic RNA binding by DEAH-box helicases before and after exon ligation. Nature communications 12 (1) (2021)
Alessandro Bonetti, Federico Agostini, Ana Maria Suzuki, Kosuke Hashimoto, Giovanni Pascarella, Juliette Gimenez, Leonie Roos, Alex J Nash, Marco Ghilotti, Christopher J F Cameron, Matthew Valentine, Yulia A Medvedeva, Shuhei Noguchi, Eneritz Agirre, Kaori Kashi, null Samudyata, Joachim Luginbühl, Riccardo Cazzoli, Saumya Agrawal, Nicholas M Luscombe, Mathieu Blanchette, Takeya Kasukawa, Michiel de Hoon, Erik Arner, Boris Lenhard, Charles Plessy, Gonçalo Castelo-Branco, Valerio Orlando, Piero Carnici
RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions. Nature communications 11 (1) (2020)
Garth R Ilsley, Ritsuko Suyama, Takeshi Noda, Noriyuki Satoh, Nicholas M Luscombe
Finding cell-specific expression patterns in the early Ciona embryo with single-cell RNA-seq. Scientific reports 10 (1) (2020)
Andrew W Liu, Yongkai Tan, Aki Masunaga, Aleksandra Bliznina, Charlotte West, Charles Plessy, Nicholas M Luscombe
H3S28P Antibody Staining of Okinawan Oikopleura dioica Suggests the Presence of Three Chromosomes. F1000Research 9 (2020)
Andrew W Liu, Yongkai Tan, Aki Masunaga, Charles Plessy, Nicholas M Luscombe
Centromere-specific antibody-mediated karyotyping of Okinawan Oikopleura dioica suggests the presence of three chromosomes. F1000Research 9 (2020)
Cai Li, Nicholas M Luscombe
Nucleosome positioning stability is a modulator of germline mutation rate variation across the human genome. Nature communications 11 (1) (2020)
X Du-Harpur, Fiona M Watt, Nicholas M Luscombe, M D Lynch
What is AI? Applications of artificial intelligence to dermatology. The British journal of dermatology 183 (3) (2020)
Thomas B K Watkins, Emilia L Lim, Marina Petkovic, Sergi Elizalde, Nicolai Juul Birkbak, Gareth A Wilson, David A Moore, Eva Grönroos, Andrew Rowan, Sally M Dewhurst, Jonas Demeulemeester, Stefan C Dentro, Stuart Horswell, Lewis Au, Kerstin Haase, Mickael Escudero, Rachel Rosenthal, Maise Al Bakir, Hang Xu, Kevin Litchfield, Wei-Ting Lu, Thanos P Mourikis, Michelle Dietzen, Lavinia Spain, George D Cresswell, Dhruva Biswas, Philippe Lamy, Iver Nordentoft, Katja Harbst, Francesc Castro Giner, Lucy R Yates, Franco Caramia, Fanny Jaulin, Cécile Vicier, Ian P M Tomlinson, Priscilla K Brastianos, Raymond J Cho, Boris C Bastian, Lars Dyrskjøt, Göran B Jönsson, Peter Savas, Sherene Loi, Peter J Campbell, Fabrice Andre, Nicholas M Luscombe, Neeltje Steeghs, Vivianne C G Tjan-Heijnen, Zoltan Szallasi, Samra Turajlic, Mariam Jamal-Hanjani, Peter Van Loo, Samuel F Bakhoum, Roland F Schwarz, Nicholas McGranahan, Charles Swanton
Pervasive chromosomal instability and karyotype order in tumour evolution. Nature 587 (7832) (2020)
Michael Briese, Nejc Haberman, Christopher R Sibley, Rupert Faraway, Andrea S Elser, Anob M Chakrabarti, Zhen Wang, Julian König, David Perera, Vihandha O Wickramasinghe, Ashok R Venkitaraman, Nicholas M Luscombe, Luciano Saieva, Livio Pellizzoni, Christopher W J Smith, Tomaz Curk, Jernej Ule
A systems view of spliceosomal assembly and branchpoints with iCLIP. Nature structural & molecular biology 26 (10) (2019)
Raphaelle Luisier, Giulia E Tyzack, Claire E Hall, Jamie S Mitchell, Helen Devine, Doaa M Taha, Bilal Malik, Ione Meyer, Linda Greensmith, Jia Newcombe, Jernej Ule, Nicholas M Luscombe, Rickie Patani
Intron retention and nuclear loss of SFPQ are molecular hallmarks of ALS. Nature communications 9 (1) (2018)
Leona Gabryšová, Marisol Alvarez-Martinez, Raphaelle Luisier, Luke S Cox, Jan Sodenkamp, Caroline Hosking, Damián Pérez-Mazliah, Charlotte Whicher, Yashaswini Kannan, Krzysztof Potempa, Xuemei Wu, Leena Bhaw, Hagen Wende, Michael H Sieweke, Greg Elgar, Mark Wilson, James Briscoe, Vicki Metzis, Jean Langhorne, Nicholas M Luscombe, Anne O'Garra
c-Maf controls immune responses by regulating disease-specific gene networks and repressing IL-2 in CD4+ T cells. Nature immunology 19 (5) (2018)