Jiří Macas (Jiri Macas)

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 34

Top Venues

Nature communications

Nature

PLoS genetics

Proceedings of the National Academy of Sciences of the United States of America

Biology Centre of the Czech Academy of Sciences

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Biology Centre of the Czech Academy of Sciences

Czechia

principal investigator :: Institute of Plant Molecular Biology

Publications

Petr Novák, Nina Hoštáková, Pavel Neumann, Jiří Macas
DANTE and DANTE_LTR: lineage-centric annotation pipelines for long terminal repeat retrotransposons in plant genomes. NAR genomics and bioinformatics 6 (3) (2024)
Anne Edwards, Isaac Njaci, Abhimanyu Sarkar, Zhouqian Jiang, Gemy George Kaithakottil, Christopher Moore, Jitender Cheema, Clare E M Stevenson, Martin Rejzek, Petr Novák, Marielle Vigouroux, Martin Vickers, Roland H M Wouters, Pirita Paajanen, Burkhard Steuernagel, Jonathan D Moore, Janet Higgins, David Swarbreck, Stefan Martens, Colin Y Kim, Jing-Ke Weng, Sagadevan Mundree, Benjamin Kilian, Shiv Kumar, Matthew William Loose, Levi Yant, Jiří Macas, Trevor L Wang, Cathie Martin, Peter Martin Ferdinand Emmrich
Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus. Nature communications 14 (1) (2023)
Murukarthick Jayakodi, Agnieszka A Golicz, Jonathan Kreplak, Lavinia Ioana Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphael Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O Warsame, Alexander H J Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Dolezel, Liisa U Holm, Luc L Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J Snowdon, Nils Stein, Frederick L Stoddard, Jens Stougaard, Nadim Tayeh, Ana M Torres, Björn Usadel, Ingo Schubert, Donal Martin O'Sullivan, Alan H Schulman, Stig Uggerhøj Andersen
The giant diploid faba genome unlocks variation in a global protein crop. Nature (2023)
Jiří Macas, Laura Ávila Robledillo, Jonathan Kreplak, Petr Novák, Andrea Koblížková, Iva Vrbová, Judith Burstin, Pavel Neumann
Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes. PLoS genetics 19 (2) (2023)
Anne Edwards, Isaac Njaci, Abhimanyu Sarkar, Zhouqian Jiang, Gemy George Kaithakottil, Christopher Moore, Jitender Cheema, Clare E M Stevenson, Martin Rejzek, Petr Novák, Marielle Vigouroux, Martin Vickers, Roland H M Wouters, Pirita Paajanen, Burkhard Steuernagel, Jonathan D Moore, Janet Higgins, David Swarbreck, Stefan Martens, Colin Y Kim, Jing-Ke Weng, Sagadevan Mundree, Benjamin Kilian, Shiv Kumar, Matthew William Loose, Levi Yant, Jiří Macas, Trevor L Wang, Cathie Martin, Peter Martin Ferdinand Emmrich
Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus. Nature communications 14 (1) (2023)
Murukarthick Jayakodi, Agnieszka A Golicz, Jonathan Kreplak, Lavinia Ioana Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphael Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O Warsame, Alexander H J Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Dolezel, Liisa U Holm, Luc L Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J Snowdon, Nils Stein, Frederick L Stoddard, Jens Stougaard, Nadim Tayeh, Ana M Torres, Björn Usadel, Ingo Schubert, Donal Martin O'Sullivan, Alan H Schulman, Stig Uggerhøj Andersen
The giant diploid faba genome unlocks variation in a global protein crop. Nature 615 (7953) (2023)
Murukarthick Jayakodi, Agnieszka A Golicz, Jonathan Kreplak, Lavinia Ioana Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphael Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O Warsame, Alexander H J Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Dolezel, Liisa U Holm, Luc L Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J Snowdon, Nils Stein, Frederick L Stoddard, Jens Stougaard, Nadim Tayeh, Ana M Torres, Björn Usadel, Ingo Schubert, Donal Martin O'Sullivan, Alan H Schulman, Stig Uggerhøj Andersen
The giant diploid faba genome unlocks variation in a global protein crop. Nature 615 (7953) (2023)
Anne Edwards, Isaac Njaci, Abhimanyu Sarkar, Zhouqian Jiang, Gemy George Kaithakottil, Christopher Moore, Jitender Cheema, Clare E M Stevenson, Martin Rejzek, Petr Novák, Marielle Vigouroux, Martin Vickers, Roland H M Wouters, Pirita Paajanen, Burkhard Steuernagel, Jonathan D Moore, Janet Higgins, David Swarbreck, Stefan Martens, Colin Y Kim, Jing-Ke Weng, Sagadevan Mundree, Benjamin Kilian, Shiv Kumar, Matthew William Loose, Levi Yant, Jiří Macas, Trevor L Wang, Cathie Martin, Peter Martin Ferdinand Emmrich
Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus. Nature communications 14 (1) (2023)
Pavel Neumann, Ludmila Oliveira, Tae-Soo Jang, Petr Novák, Andrea Koblížková, Veit Schubert, Anastassia Boudichevskaia, Jiří Macas
Disruption of the standard kinetochore in holocentric Cuscuta species. Proceedings of the National Academy of Sciences of the United States of America 120 (21) (2023)
Anne Edwards, Isaac Njaci, Abhimanyu Sarkar, Zhouqian Jiang, Gemy George Kaithakottil, Christopher Moore, Jitender Cheema, Clare E M Stevenson, Martin Rejzek, Petr Novák, Marielle Vigouroux, Martin Vickers, Roland H M Wouters, Pirita Paajanen, Burkhard Steuernagel, Jonathan D Moore, Janet Higgins, David Swarbreck, Stefan Martens, Colin Y Kim, Jing-Ke Weng, Sagadevan Mundree, Benjamin Kilian, Shiv Kumar, Matthew William Loose, Levi Yant, Jiří Macas, Trevor L Wang, Cathie Martin, Peter Martin Ferdinand Emmrich
Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus. Nature communications 14 (1) (2023)
Jiří Macas, Laura Ávila Robledillo, Jonathan Kreplak, Petr Novák, Andrea Koblížková, Iva Vrbová, Judith Burstin, Pavel Neumann
Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes. PLoS genetics 19 (2) (2023)
Jiří Macas, Laura Ávila Robledillo, Jonathan Kreplak, Petr Novák, Andrea Koblížková, Iva Vrbová, Judith Burstin, Pavel Neumann
Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes. PLoS genetics 19 (2) (2023)
Murukarthick Jayakodi, Agnieszka A Golicz, Jonathan Kreplak, Lavinia Ioana Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphael Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O Warsame, Alexander H J Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Dolezel, Liisa U Holm, Luc L Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J Snowdon, Nils Stein, Frederick L Stoddard, Jens Stougaard, Nadim Tayeh, Ana M Torres, Björn Usadel, Ingo Schubert, Donal Martin O'Sullivan, Alan H Schulman, Stig Uggerhøj Andersen
The giant diploid faba genome unlocks variation in a global protein crop. Nature (2023)
Anne Edwards, Isaac Njaci, Abhimanyu Sarkar, Zhouqian Jiang, Gemy George Kaithakottil, Christopher Moore, Jitender Cheema, Clare E M Stevenson, Martin Rejzek, Petr Novák, Marielle Vigouroux, Martin Vickers, Roland H M Wouters, Pirita Paajanen, Burkhard Steuernagel, Jonathan D Moore, Janet Higgins, David Swarbreck, Stefan Martens, Colin Y Kim, Jing-Ke Weng, Sagadevan Mundree, Benjamin Kilian, Shiv Kumar, Matthew William Loose, Levi Yant, Jiří Macas, Trevor L Wang, Cathie Martin, Peter Martin Ferdinand Emmrich
Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus. Nature communications 14 (1) (2023)
Anne Edwards, Isaac Njaci, Abhimanyu Sarkar, Zhouqian Jiang, Gemy George Kaithakottil, Christopher Moore, Jitender Cheema, Clare E M Stevenson, Martin Rejzek, Petr Novák, Marielle Vigouroux, Martin Vickers, Roland H M Wouters, Pirita Paajanen, Burkhard Steuernagel, Jonathan D Moore, Janet Higgins, David Swarbreck, Stefan Martens, Colin Y Kim, Jing-Ke Weng, Sagadevan Mundree, Benjamin Kilian, Shiv Kumar, Matthew William Loose, Levi Yant, Jiří Macas, Trevor L Wang, Cathie Martin, Peter Martin Ferdinand Emmrich
Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus. Nature communications 14 (1) (2023)
Murukarthick Jayakodi, Agnieszka A Golicz, Jonathan Kreplak, Lavinia Ioana Fechete, Deepti Angra, Petr Bednář, Elesandro Bornhofen, Hailin Zhang, Raphael Boussageon, Sukhjiwan Kaur, Kwok Cheung, Jana Čížková, Heidrun Gundlach, Asis Hallab, Baptiste Imbert, Gabriel Keeble-Gagnère, Andrea Koblížková, Lucie Kobrlová, Petra Krejčí, Troels W Mouritzen, Pavel Neumann, Marcin Nadzieja, Linda Kærgaard Nielsen, Petr Novák, Jihad Orabi, Sudharsan Padmarasu, Tom Robertson-Shersby-Harvie, Laura Ávila Robledillo, Andrea Schiemann, Jaakko Tanskanen, Petri Törönen, Ahmed O Warsame, Alexander H J Wittenberg, Axel Himmelbach, Grégoire Aubert, Pierre-Emmanuel Courty, Jaroslav Dolezel, Liisa U Holm, Luc L Janss, Hamid Khazaei, Jiří Macas, Martin Mascher, Petr Smýkal, Rod J Snowdon, Nils Stein, Frederick L Stoddard, Jens Stougaard, Nadim Tayeh, Ana M Torres, Björn Usadel, Ingo Schubert, Donal Martin O'Sullivan, Alan H Schulman, Stig Uggerhøj Andersen
The giant diploid faba genome unlocks variation in a global protein crop. Nature 615 (7953) (2023)
Yi-Tzu Kuo, Amanda Souza Câmara, Veit Schubert, Pavel Neumann, Jiří Macas, Michael Melzer, Jianyong Chen, Joerg Fuchs, Simone Abel, Evelyn Klocke, Bruno Huettel, Axel Himmelbach, Dmitri Demidov, Frank Dunemann, Martin Mascher, Takayoshi Ishii, André Marques, Anastassia Boudichevskaia
Holocentromeres can consist of merely a few megabase-sized satellite arrays. Nature communications 14 (1) (2023)
Anne Edwards, Isaac Njaci, Abhimanyu Sarkar, Zhouqian Jiang, Gemy George Kaithakottil, Christopher Moore, Jitender Cheema, Clare E M Stevenson, Martin Rejzek, Petr Novák, Marielle Vigouroux, Martin Vickers, Roland H M Wouters, Pirita Paajanen, Burkhard Steuernagel, Jonathan D Moore, Janet Higgins, David Swarbreck, Stefan Martens, Colin Y Kim, Jing-Ke Weng, Sagadevan Mundree, Benjamin Kilian, Shiv Kumar, Matthew William Loose, Levi Yant, Jiří Macas, Trevor L Wang, Cathie Martin, Peter Martin Ferdinand Emmrich
Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus. Nature communications 14 (1) (2023)
Anne Edwards, Isaac Njaci, Abhimanyu Sarkar, Zhouqian Jiang, Gemy George Kaithakottil, Christopher Moore, Jitender Cheema, Clare E M Stevenson, Martin Rejzek, Petr Novák, Marielle Vigouroux, Martin Vickers, Roland H M Wouters, Pirita Paajanen, Burkhard Steuernagel, Jonathan D Moore, Janet Higgins, David Swarbreck, Stefan Martens, Colin Y Kim, Jing-Ke Weng, Sagadevan Mundree, Benjamin Kilian, Shiv Kumar, Matthew William Loose, Levi Yant, Jiří Macas, Trevor L Wang, Cathie Martin, Peter Martin Ferdinand Emmrich
Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus. Nature communications 14 (1) (2023)
Pavel Neumann, Ludmila Oliveira, Tae-Soo Jang, Petr Novák, Andrea Koblížková, Veit Schubert, Anastassia Boudichevskaia, Jiří Macas
Disruption of the standard kinetochore in holocentric Cuscuta species. Proceedings of the National Academy of Sciences of the United States of America 120 (21) (2023)
Pavel Neumann, Ludmila Oliveira, Tae-Soo Jang, Petr Novák, Andrea Koblížková, Veit Schubert, Anastassia Boudichevskaia, Jiří Macas
Disruption of the standard kinetochore in holocentric Cuscuta species. Proceedings of the National Academy of Sciences of the United States of America 120 (21) (2023)
Jiří Macas, Laura Ávila Robledillo, Jonathan Kreplak, Petr Novák, Andrea Koblížková, Iva Vrbová, Judith Burstin, Pavel Neumann
Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes. PLoS genetics 19 (2) (2023)
Anne Edwards, Isaac Njaci, Abhimanyu Sarkar, Zhouqian Jiang, Gemy George Kaithakottil, Christopher Moore, Jitender Cheema, Clare E M Stevenson, Martin Rejzek, Petr Novák, Marielle Vigouroux, Martin Vickers, Roland H M Wouters, Pirita Paajanen, Burkhard Steuernagel, Jonathan D Moore, Janet Higgins, David Swarbreck, Stefan Martens, Colin Y Kim, Jing-Ke Weng, Sagadevan Mundree, Benjamin Kilian, Shiv Kumar, Matthew William Loose, Levi Yant, Jiří Macas, Trevor L Wang, Cathie Martin, Peter Martin Ferdinand Emmrich
Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus. Nature communications 14 (1) (2023)
Anne Edwards, Isaac Njaci, Abhimanyu Sarkar, Zhouqian Jiang, Gemy George Kaithakottil, Christopher Moore, Jitender Cheema, Clare E M Stevenson, Martin Rejzek, Petr Novák, Marielle Vigouroux, Martin Vickers, Roland H M Wouters, Pirita Paajanen, Burkhard Steuernagel, Jonathan D Moore, Janet Higgins, David Swarbreck, Stefan Martens, Colin Y Kim, Jing-Ke Weng, Sagadevan Mundree, Benjamin Kilian, Shiv Kumar, Matthew William Loose, Levi Yant, Jiří Macas, Trevor L Wang, Cathie Martin, Peter Martin Ferdinand Emmrich
Author Correction: Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus. Nature communications 14 (1) (2023)
Zuzana Tulpová, Ales Kovařík, Helena Toegelová, Pavla Navrátilová, Veronika Kapustová, Eva Hřibová, Jan Vrána, Jiří Macas, Jaroslav Dolezel, Hana Šimková
Fine structure and transcription dynamics of bread wheat ribosomal DNA loci deciphered by a multi-omics approach. The plant genome 15 (1) (2022)
Rowan J Schley, Jaume Pellicer, Xue-Jun Ge, Craig F Barrett, Sidonie Bellot, Maïté S Guignard, Petr Novák, Jan Suda, Donald P Fraser, William J Baker, Steven Dodsworth, Jiří Macas, Andrew R Leitch, Ilia J Leitch
The ecology of palm genomes: repeat-associated genome size expansion is constrained by aridity. The New phytologist 236 (2) (2022)
Phuong T N Hoang, Jean-Marie Rouillard, Jiří Macas, Ivona Kubalová, Veit Schubert, Ingo Schubert
Limitation of current probe design for oligo-cross-FISH, exemplified by chromosome evolution studies in duckweeds. Chromosoma 130 (1) (2021)
Pavel Neumann, Ludmila Oliveira, Jana Čížková, Tae-Soo Jang, Sonja Klemme, Petr Novák, Katarzyna Stelmach, Andrea Koblížková, Jaroslav Dolezel, Jiří Macas
Impact of parasitic lifestyle and different types of centromere organization on chromosome and genome evolution in the plant genus Cuscuta. The New phytologist 229 (4) (2020)
Petr Novák, Maïté S Guignard, Pavel Neumann, Laura J Kelly, Jelena Mlinarec, Andrea Koblížková, Steven Dodsworth, Aleš Kovařík, Jaume Pellicer, Wencai Wang, Jiří Macas, Ilia J Leitch, Andrew R Leitch
Repeat-sequence turnover shifts fundamentally in species with large genomes. Nature plants 6 (11) (2020)
Petr Novák, Pavel Neumann, Jiří Macas
Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2. Nature protocols 15 (11) (2020)
Phuong T N Hoang, Anne Fiebig, Petr Novák, Jiří Macas, Hieu Xuan Cao, Anton Stepanenko, Guimin Chen, Nikolai Borisjuk, Uwe Scholz, Ingo Schubert
Chromosome-scale genome assembly for the duckweed Spirodela intermedia, integrating cytogenetic maps, PacBio and Oxford Nanopore libraries. Scientific reports 10 (1) (2020)
Tihana Vondrak, Laura Ávila Robledillo, Petr Novák, Andrea Koblížková, Pavel Neumann, Jiří Macas
Characterization of repeat arrays in ultra-long nanopore reads reveals frequent origin of satellite DNA from retrotransposon-derived tandem repeats. The Plant journal : for cell and molecular biology 101 (2) (2019)
Dan-Dan Wu, Alevtina Ruban, Joerg Fuchs, Jiří Macas, Petr Novák, Magdalena Vaio, YongHong Zhou, Anastassia Boudichevskaia
Nondisjunction and unequal spindle organization accompany the drive of Aegilops speltoides B chromosomes. The New phytologist 223 (3) (2019)
Jonathan Kreplak, Mohammed-Amin Madoui, Petr Cápal, Petr Novák, Karine Labadie, Grégoire Aubert, Philipp Emanuel Bayer, Krishna K Gali, Robert A Syme, Dorrie Main, Anthony Klein, Aurélie Bérard, Iva Vrbová, Cyril Fournier, Leo d'Agata, Caroline Belser, Wahiba Berrabah, Helena Toegelová, Zbyněk Milec, Jan Vrána, HueyTyng Lee, Ayité Kougbeadjo, Morgane Térézol, Cécile Huneau, Chala J Turo, Nacer Mohellibi, Pavel Neumann, Matthieu Falque, Karine Gallardo, Rebecca McGee, Bunyamin Tar'an, Abdelhafid Bendahmane, Jean-Marc Aury, Jacqueline Batley, Marie-Christine Le Paslier, T H Noel Ellis, Thomas D Warkentin, Clarice J Coyne, Jérome Salse, David Edwards, Judith Lichtenzveig, Jiří Macas, Jaroslav Dolezel, Patrick Wincker, Judith Burstin
A reference genome for pea provides insight into legume genome evolution. Nature genetics 51 (9) (2019)

Jiří Macas.css-eqlu8i{font-size:small;padding-left:4px;} (Jiri Macas)

Publication Activity (10 Years)

Top Topics

Top Venues

Jiří Macas (Jiri Macas)