Pranam Chatterjee

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 28

Top Topics

Autism Spectrum Disorder

Induced Pluripotent Stem Cells

Top Venues

bioRxiv : the preprint server for biology

Research square

This page only lists publications with an associated author ORCID identifier.

Publications

Pranam Chatterjee, Lauren Hong, Tianzheng Ye, Tian Wang, Divya Sri, Lin Zhao, Rio Watson, Sophia Vincoff, Tianlai Chen, Kseniia Kholina, Shrey Goel, Matthew DeLisa
Programmable Protein Stabilization with Language Model-Derived Peptide Guides. Research square (2024)
Zhangzhi Peng, Benjamin Schussheim, Pranam Chatterjee
PTM-Mamba: A PTM-Aware Protein Language Model with Bidirectional Gated Mamba Blocks. bioRxiv : the preprint server for biology (2024)
Tong Chen, Pranam Chatterjee
Synergizing sequence and structure representations to predict protein variants. Cell research (2024)
Suhaas Bhat, Kalyan Palepu, Lauren Hong, Joey Mao, Tianzheng Ye, Rema Iyer, Lin Zhao, Tianlai Chen, Sophia Vincoff, Rio Watson, Tian Wang, Divya Srijay, Venkata Srikar Kavirayuni, Kseniia Kholina, Shrey Goel, Pranay Vure, Aniruddha J Desphande, Scott H Soderling, Matthew P DeLisa, Pranam Chatterjee
De Novo Design of Peptide Binders to Conformationally Diverse Targets with Contrastive Language Modeling. bioRxiv : the preprint server for biology (2024)
Tong Chen, Yinuo Zhang, Pranam Chatterjee
moPPIt: De Novo Generation of Motif-Specific Binders with Protein Language Models. bioRxiv : the preprint server for biology (2024)
Tong Chen, Yinuo Zhang, Pranam Chatterjee
moPPIt: De Novo Generation of Motif-Specific Binders with Protein Language Models. bioRxiv : the preprint server for biology (2024)
Zhangzhi Peng, Benjamin Schussheim, Pranam Chatterjee
PTM-Mamba: A PTM-Aware Protein Language Model with Bidirectional Gated Mamba Blocks. bioRxiv : the preprint server for biology (2024)
Sophia Vincoff, Shrey Goel, Kseniia Kholina, Rishab Pulugurta, Pranay Vure, Pranam Chatterjee
FusOn-pLM: A Fusion Oncoprotein-Specific Language Model via Focused Probabilistic Masking. bioRxiv : the preprint server for biology (2024)
Pranam Chatterjee, Lauren Hong, Tianzheng Ye, Tian Wang, Divya Sri, Lin Zhao, Rio Watson, Sophia Vincoff, Tianlai Chen, Kseniia Kholina, Shrey Goel, Matthew DeLisa
Programmable Protein Stabilization with Language Model-Derived Peptide Guides. Research square (2024)
Sophia Vincoff, Shrey Goel, Kseniia Kholina, Rishab Pulugurta, Pranay Vure, Pranam Chatterjee
FusOn-pLM: A Fusion Oncoprotein-Specific Language Model via Focused Probabilistic Masking. bioRxiv : the preprint server for biology (2024)
Suhaas Bhat, Kalyan Palepu, Lauren Hong, Joey Mao, Tianzheng Ye, Rema Iyer, Lin Zhao, Tianlai Chen, Sophia Vincoff, Rio Watson, Tian Wang, Divya Srijay, Venkata Srikar Kavirayuni, Kseniia Kholina, Shrey Goel, Pranay Vure, Aniruddha J Desphande, Scott H Soderling, Matthew P DeLisa, Pranam Chatterjee
De Novo Design of Peptide Binders to Conformationally Diverse Targets with Contrastive Language Modeling. bioRxiv : the preprint server for biology (2024)
Suhaas Bhat, Kalyan Palepu, Lauren Hong, Joey Mao, Tianzheng Ye, Rema Iyer, Lin Zhao, Tianlai Chen, Sophia Vincoff, Rio Watson, Tian Wang, Divya Srijay, Venkata Srikar Kavirayuni, Kseniia Kholina, Shrey Goel, Pranay Vure, Aniruddha J Desphande, Scott H Soderling, Matthew P DeLisa, Pranam Chatterjee
De Novo Design of Peptide Binders to Conformationally Diverse Targets with Contrastive Language Modeling. bioRxiv : the preprint server for biology (2024)
Lauren Hong, Tianzheng Ye, Tian Zi Wang, Divya Srijay, Lin Zhao, Rio Watson, Sophia Vincoff, Tianlai Chen, Kseniia Kholina, Shrey Goel, Matthew P DeLisa, Pranam Chatterjee
Programmable Protein Stabilization with Language Model-Derived Peptide Guides. Research square (2024)
Suhaas Bhat, Kalyan Palepu, Lauren Hong, Joey Mao, Tianzheng Ye, Rema Iyer, Lin Zhao, Tianlai Chen, Sophia Vincoff, Rio Watson, Tian Wang, Divya Srijay, Venkata Srikar Kavirayuni, Kseniia Kholina, Shrey Goel, Pranay Vure, Aniruddha J Desphande, Scott H Soderling, Matthew P DeLisa, Pranam Chatterjee
De Novo Design of Peptide Binders to Conformationally Diverse Targets with Contrastive Language Modeling. bioRxiv : the preprint server for biology (2024)
Tong Chen, Pranam Chatterjee
Synergizing sequence and structure representations to predict protein variants. Cell research 34 (9) (2024)
Lin Zhao, Sabrina R T Koseki, Rachel A Silverstein, Nadia Amrani, Christina Peng, Christian Kramme, Natasha Savic, Martin Pacesa, Tomas C Rodriguez, Teodora Stan, Emma Tysinger, Lauren Hong, Vivian Yudistyra, Manvitha R Ponnapati, Joseph M Jacobson, George M Church, Noah Jakimo, Ray Truant, Martin Jinek, Benjamin P Kleinstiver, Erik J Sontheimer, Pranam Chatterjee
PAM-flexible genome editing with an engineered chimeric Cas9. Nature communications 14 (1) (2023)
Merrick Pierson Smela, Christian C Kramme, Patrick R J Fortuna, Jessica L Adams, Rui Su, Edward Dong, Mutsumi Kobayashi, Garyk Brixi, Venkata Srikar Kavirayuni, Emma Tysinger, Richie E Kohman, Toshihiro Shioda, Pranam Chatterjee, George M Church
Directed differentiation of human iPSCs to functional ovarian granulosa-like cells via transcription factor overexpression. eLife 12 (2023)
Garyk Brixi, Tianzheng Ye, Lauren Hong, Tian Wang, Connor Monticello, Natalia Lopez-Barbosa, Sophia Vincoff, Vivian Yudistyra, Lin Zhao, Elena L Haarer, Tianlai Chen, Sarah Pertsemlidis, Kalyan Palepu, Suhaas Bhat, Jayani Christopher, Xinning Li, Tong Liu, Sue Zhang, Lillian Petersen, Matthew P DeLisa, Pranam Chatterjee
SaLT&PepPr is an interface-predicting language model for designing peptide-guided protein degraders. Communications biology 6 (1) (2023)
Merrick Pierson Smela, Christian C Kramme, Patrick R J Fortuna, Jessica L Adams, Rui Su, Edward Dong, Mutsumi Kobayashi, Garyk Brixi, Venkata Srikar Kavirayuni, Emma Tysinger, Richie E Kohman, Toshihiro Shioda, Pranam Chatterjee, George M Church
Directed differentiation of human iPSCs to functional ovarian granulosa-like cells via transcription factor overexpression. eLife 12 (2023)
Merrick Pierson Smela, Christian C Kramme, Patrick R J Fortuna, Jessica L Adams, Rui Su, Edward Dong, Mutsumi Kobayashi, Garyk Brixi, Venkata Srikar Kavirayuni, Emma Tysinger, Richie E Kohman, Toshihiro Shioda, Pranam Chatterjee, George M Church
Directed differentiation of human iPSCs to functional ovarian granulosa-like cells via transcription factor overexpression. eLife 12 (2023)
Merrick Pierson Smela, Christian C Kramme, Patrick R J Fortuna, Jessica L Adams, Rui Su, Edward Dong, Mutsumi Kobayashi, Garyk Brixi, Venkata Srikar Kavirayuni, Emma Tysinger, Richie E Kohman, Toshihiro Shioda, Pranam Chatterjee, George M Church
Directed differentiation of human iPSCs to functional ovarian granulosa-like cells via transcription factor overexpression. eLife 12 (2023)
Shun-Qing Liang, Pengpeng Liu, Karthikeyan Ponnienselvan, Sneha Suresh, Zexiang Chen, Christian Kramme, Pranam Chatterjee, Julie Lihua Zhu, Erik J Sontheimer, Wen Xue, Scot A Wolfe
Genome-wide profiling of prime editor off-target sites in vitro and in vivo using PE-tag. Nature methods (2023)
Sabrina Koseki, Lauren Hong, Vivian Yudistyra, Teodora Stan, Emma Tysinger, Rachel Silverstein, Christian Kramme, Nadia Amrani, Natasha Savic, Martin Pacesa, Tomas C Rodriguez, Manvitha Ponnapati, Joseph Jacobson, George Church, Ray Truant, Martin Jinek, Benjamin P Kleinstiver, Erik J Sontheimer, Pranam Chatterjee
PAM-Flexible Genome Editing with an Engineered Chimeric Cas9. Research square (2023)
Merrick Pierson Smela, Christian C Kramme, Patrick R J Fortuna, Jessica L Adams, Rui Su, Edward Dong, Mutsumi Kobayashi, Garyk Brixi, Venkata Srikar Kavirayuni, Emma Tysinger, Richie E Kohman, Toshihiro Shioda, Pranam Chatterjee, George M Church
Directed differentiation of human iPSCs to functional ovarian granulosa-like cells via transcription factor overexpression. eLife 12 (2023)
Merrick Pierson Smela, Christian C Kramme, Patrick R J Fortuna, Jessica L Adams, Rui Su, Edward Dong, Mutsumi Kobayashi, Garyk Brixi, Venkata Srikar Kavirayuni, Emma Tysinger, Richie E Kohman, Toshihiro Shioda, Pranam Chatterjee, George M Church
Directed differentiation of human iPSCs to functional ovarian granulosa-like cells via transcription factor overexpression. eLife 12 (2023)
Pranam Chatterjee, Noah Jakimo, Jooyoung Lee, Nadia Amrani, Tomás Rodríguez, Sabrina R T Koseki, Emma Tysinger, Rui Qing, Shilei Hao, Erik J Sontheimer, Joseph Jacobson
An engineered ScCas9 with broad PAM range and high specificity and activity. Nature biotechnology 38 (10) (2020)
Pranam Chatterjee, Manvitha Ponnapati, Christian Kramme, Alexandru M Plesa, George M Church, Joseph M Jacobson
Targeted intracellular degradation of SARS-CoV-2 via computationally optimized peptide fusions. Communications biology 3 (1) (2020)
Pranam Chatterjee, Noah Jakimo, Joseph M Jacobson
Minimal PAM specificity of a highly similar SpCas9 ortholog. Science advances 4 (10) (2018)