Julie Lihua Zhu (Lihua Julie Zhu)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 52

Top Venues

Nature communications

Science translational medicine

bioRxiv : the preprint server for biology

Nature cancer

University of Massachusetts Medical School

DePaul University (MSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Massachusetts Medical School Sep 10 2015

United States

Professor and Head of Bioinformatics Core :: Molecular, Cell and Cancer Biology

University of Massachusetts Medical School Oct 01 2009 - Sep 09 2015

United States

Research Associate Professor and Head of Bioinformatics Core :: Molecular, Cell and Cancer Biology

University of Massachusetts Medical School Sep 04 2007 - Oct 01 2009

United States

Research Assistant Professor and Head of Bioinformatics Core :: Program in Gene Function and Expression

Northwestern University Apr 01 2005 - Sep 03 2007

United States

Head of the Biomedical Informatics Group :: Robert H. Lurie Comprehensive Cancer Center

Northwestern University - Chicago Sep 01 2003 - Apr 01 2005

United States

Head of the Bioinformatics Consulting Group :: Robert H. Lurie Comprehensive Cancer Center

Northwestern University Feinberg School of Medicine Dec 01 2001 - Sep 01 2003

United States

Software Engineer :: Robert H. Lurie Comprehensive Cancer Center

Education History

DePaul University Sep 01 1999 - Jun 15 2011

United States

MSC :: Computer Science

University of Wisconsin Madison Sep 01 1994 - Sep 01 1999

United States

PHD :: Nutritional Science

China Agricultural University Sep 01 1990 - Jul 01 1993

China

MSC :: Animal Science

China Agricultural University Sep 01 1986 - Jul 01 1990

China

BSC :: Animal Science

Publications

Haibo Liu, Kai Hu, Kevin O'Connor, Michelle A Kelliher, Julie Lihua Zhu
CleanUpRNAseq: An R/Bioconductor Package for Detecting and Correcting DNA Contamination in RNA-Seq Data. Biotech (Basel (Switzerland)) 13 (3) (2024)
Loretah Chibaya, Kelly D DeMarco, Christina F Lusi, Griffin I Kane, Meghan L Brassil, Chaitanya N Parikh, Katherine C Murphy, Shreya R Chowdhury, Junhui Li, Boyang Ma, Tiana E Naylor, Julia Cerrutti, Haruka Mori, Miranda Diaz-Infante, Jessica Peura, Jason R Pitarresi, Julie Lihua Zhu, Katherine A Fitzgerald, Prabhani U Atukorale, Marcus Ruscetti
Nanoparticle delivery of innate immune agonists combined with senescence-inducing agents promotes T cell control of pancreatic cancer. Science translational medicine 16 (762) (2024)
Haibo Liu, Kai Hu, Kevin O'Connor, Michelle A Kelliher, Julie Lihua Zhu
CleanUpRNAseq: An R/Bioconductor Package for Detecting and Correcting DNA Contamination in RNA-Seq Data. Biotech (Basel (Switzerland)) 13 (3) (2024)
Alka Singh, Kandahalli Venkataranganayaka Abhilasha, Kathya R Acharya, Haibo Liu, Niraj K Nirala, Velayoudame Parthibane, Govind Kunduri, Thiruvaimozhi Abimannan, Jacob Tantalla, Julie Lihua Zhu, Jairaj K Acharya, Usha R Acharya
A nutrient responsive lipase mediates gut-brain communication to regulate insulin secretion in Drosophila. Nature communications 15 (1) (2024)
Alka Singh, Kandahalli Venkataranganayaka Abhilasha, Kathya R Acharya, Haibo Liu, Niraj K Nirala, Velayoudame Parthibane, Govind Kunduri, Thiruvaimozhi Abimannan, Jacob Tantalla, Julie Lihua Zhu, Jairaj K Acharya, Usha R Acharya
A nutrient responsive lipase mediates gut-brain communication to regulate insulin secretion in Drosophila. Nature communications 15 (1) (2024)
Alka Singh, Kandahalli Venkataranganayaka Abhilasha, Kathya R Acharya, Haibo Liu, Niraj K Nirala, Velayoudame Parthibane, Govind Kunduri, Thiruvaimozhi Abimannan, Jacob Tantalla, Julie Lihua Zhu, Jairaj K Acharya, Usha R Acharya
A nutrient responsive lipase mediates gut-brain communication to regulate insulin secretion in Drosophila. Nature communications 15 (1) (2024)
Alka Singh, Kandahalli Venkataranganayaka Abhilasha, Kathya R Acharya, Haibo Liu, Niraj K Nirala, Velayoudame Parthibane, Govind Kunduri, Thiruvaimozhi Abimannan, Jacob Tantalla, Julie Lihua Zhu, Jairaj K Acharya, Usha R Acharya
A nutrient responsive lipase mediates gut-brain communication to regulate insulin secretion in Drosophila. Nature communications 15 (1) (2024)
Katherine C Murphy, Kelly D DeMarco, Lin Zhou, Yvette Lopez-Diaz, Yu-Jui Ho, Junhui Li, Shi Bai, Karl Simin, Julie Lihua Zhu, Arthur M Mercurio, Marcus Ruscetti
MYC and p53 alterations cooperate through VEGF signaling to repress cytotoxic T cell and immunotherapy responses in prostate cancer. bioRxiv : the preprint server for biology (2024)
Katherine C Murphy, Kelly D DeMarco, Lin Zhou, Yvette Lopez-Diaz, Yu-Jui Ho, Junhui Li, Shi Bai, Karl Simin, Julie Lihua Zhu, Arthur M Mercurio, Marcus Ruscetti
MYC and p53 alterations cooperate through VEGF signaling to repress cytotoxic T cell and immunotherapy responses in prostate cancer. bioRxiv : the preprint server for biology (2024)
Loretah Chibaya, Kelly D DeMarco, Christina F Lusi, Griffin I Kane, Meghan L Brassil, Chaitanya N Parikh, Katherine C Murphy, Shreya R Chowdhury, Junhui Li, Boyang Ma, Tiana E Naylor, Julia Cerrutti, Haruka Mori, Miranda Diaz-Infante, Jessica Peura, Jason R Pitarresi, Julie Lihua Zhu, Katherine A Fitzgerald, Prabhani U Atukorale, Marcus Ruscetti
Nanoparticle delivery of innate immune agonists combined with senescence-inducing agents promotes T cell control of pancreatic cancer. Science translational medicine 16 (762) (2024)
Michelle M Conti, Rui Li, Michelle A Narváez Ramos, Julie Lihua Zhu, Thomas G Fazzio, Jennifer A Benanti
Phosphosite Scanning reveals a complex phosphorylation code underlying CDK-dependent activation of Hcm1. Nature communications 14 (1) (2023)
Michelle M Conti, Rui Li, Michelle A Narváez Ramos, Julie Lihua Zhu, Thomas G Fazzio, Jennifer A Benanti
Phosphosite Scanning reveals a complex phosphorylation code underlying CDK-dependent activation of Hcm1. Nature communications 14 (1) (2023)
Michelle M Conti, Rui Li, Michelle A Narváez Ramos, Julie Lihua Zhu, Thomas G Fazzio, Jennifer A Benanti
Phosphosite Scanning reveals a complex phosphorylation code underlying CDK-dependent activation of Hcm1. Nature communications 14 (1) (2023)
Mohd Hafiz Ahmad, Mahesh Hegde, Waihay J Wong, Mona M Hosseini, Lisa J Garrett, Anneliese Carrascoso, Neethu G Issac, Benjamin L Ebert, Jeffrey C Silva, German Pihan, Julie Lihua Zhu, Scot A Wolfe, Anupriya Agarwal, Paul P Liu, Lucio H Castilla
Runx1-R188Q germline mutation induces inflammation and predisposition to hematologic malignancies in mice. Blood advances (2023)
Loretah Chibaya, Katherine C Murphy, Kelly D DeMarco, Sneha Gopalan, Haibo Liu, Chaitanya N Parikh, Yvette Lopez-Diaz, Melissa Faulkner, Junhui Li, John P Morris, Yu-Jui Ho, Sachliv K Chana, Janelle Simon, Wei Luan, Amanda Kulick, Elisa de Stanchina, Karl Simin, Julie Lihua Zhu, Thomas G Fazzio, Scott W Lowe, Marcus Ruscetti
EZH2 inhibition remodels the inflammatory senescence-associated secretory phenotype to potentiate pancreatic cancer immune surveillance. Nature cancer (2023)
Mengdie Wang, Christi A Wisniewski, Choua Xiong, Peter Chhoy, Hira Lal Goel, Ayush Kumar, Julie Lihua Zhu, Rui Li, Pamela A St Louis, Lindsay M Ferreira, Hubert Pakula, Zhiwen Xu, Massimo Loda, Zhong Jiang, Michael A Brehm, Arthur M Mercurio
Therapeutic blocking of VEGF binding to neuropilin-2 diminishes PD-L1 expression to activate antitumor immunity in prostate cancer. Science translational medicine 15 (694) (2023)
Loretah Chibaya, Katherine C Murphy, Kelly D DeMarco, Sneha Gopalan, Haibo Liu, Chaitanya N Parikh, Yvette Lopez-Diaz, Melissa Faulkner, Junhui Li, John P Morris, Yu-Jui Ho, Sachliv K Chana, Janelle Simon, Wei Luan, Amanda Kulick, Elisa de Stanchina, Karl Simin, Julie Lihua Zhu, Thomas G Fazzio, Scott W Lowe, Marcus Ruscetti
EZH2 inhibition remodels the inflammatory senescence-associated secretory phenotype to potentiate pancreatic cancer immune surveillance. Nature cancer (2023)
Michelle M Conti, Rui Li, Michelle A Narváez Ramos, Julie Lihua Zhu, Thomas G Fazzio, Jennifer A Benanti
Phosphosite Scanning reveals a complex phosphorylation code underlying CDK-dependent activation of Hcm1. Nature communications 14 (1) (2023)
Loretah Chibaya, Katherine C Murphy, Kelly D DeMarco, Sneha Gopalan, Haibo Liu, Chaitanya N Parikh, Yvette Lopez-Diaz, Melissa Faulkner, Junhui Li, John P Morris, Yu-Jui Ho, Sachliv K Chana, Janelle Simon, Wei Luan, Amanda Kulick, Elisa de Stanchina, Karl Simin, Julie Lihua Zhu, Thomas G Fazzio, Scott W Lowe, Marcus Ruscetti
EZH2 inhibition remodels the inflammatory senescence-associated secretory phenotype to potentiate pancreatic cancer immune surveillance. Nature cancer (2023)
Loretah Chibaya, Christina F Lusi, Kelly D DeMarco, Griffin I Kane, Meghan L Brassil, Chaitanya N Parikh, Katherine C Murphy, Junhui Li, Tiana E Naylor, Julia Cerrutti, Jessica Peura, Jason R Pitarresi, Julie Lihua Zhu, Katherine A Fitzgerald, Prabhani U Atukorale, Marcus Ruscetti
Nanoparticle delivery of innate immune agonists combines with senescence-inducing agents to mediate T cell control of pancreatic cancer. bioRxiv : the preprint server for biology (2023)
Michelle M Conti, Rui Li, Michelle A Narváez Ramos, Julie Lihua Zhu, Thomas G Fazzio, Jennifer A Benanti
Phosphosite Scanning reveals a complex phosphorylation code underlying CDK-dependent activation of Hcm1. Nature communications 14 (1) (2023)
Shun-Qing Liang, Pengpeng Liu, Karthikeyan Ponnienselvan, Sneha Suresh, Zexiang Chen, Christian Kramme, Pranam Chatterjee, Julie Lihua Zhu, Erik J Sontheimer, Wen Xue, Scot A Wolfe
Genome-wide profiling of prime editor off-target sites in vitro and in vivo using PE-tag. Nature methods (2023)
Michelle M Conti, Rui Li, Michelle A Narváez Ramos, Julie Lihua Zhu, Thomas G Fazzio, Jennifer A Benanti
Phosphosite Scanning reveals a complex phosphorylation code underlying CDK-dependent activation of Hcm1. Nature communications 14 (1) (2023)
Mihir B Doshi, Namgyu Lee, Tenzin Tseyang, Olga Ponomarova, Hira Lal Goel, Meghan Spears, Rui Li, Julie Lihua Zhu, Christopher Ashwood, Karl Simin, Cholsoon Jang, Arthur M Mercurio, Albertha J M Walhout, Jessica Brooke Spinelli, Dohoon Kim
Disruption of sugar nucleotide clearance is a therapeutic vulnerability of cancer cells. Nature (2023)
Mengdie Wang, Christi A Wisniewski, Choua Xiong, Peter Chhoy, Hira Lal Goel, Ayush Kumar, Julie Lihua Zhu, Rui Li, Pamela A St Louis, Lindsay M Ferreira, Hubert Pakula, Zhiwen Xu, Massimo Loda, Zhong Jiang, Michael A Brehm, Arthur M Mercurio
Therapeutic blocking of VEGF binding to neuropilin-2 diminishes PD-L1 expression to activate antitumor immunity in prostate cancer. Science translational medicine 15 (694) (2023)
Qiyuan Yang, Pengpeng Liu, Nadine S Anderson, Tomer Shpilka, YunGuang Du, Nandhitha Uma Naresh, Rui Li, Julie Lihua Zhu, Kevin Luk, Josh Lavelle, Rilee D Zeinert, Peter Chien, Scot A Wolfe, Cole M Haynes
LONP-1 and ATFS-1 sustain deleterious heteroplasmy by promoting mtDNA replication in dysfunctional mitochondria. Nature cell biology 24 (2) (2022)
Qingbo Chen, Lei Huang, Dong-Ning Pan, Kai Hu, Rui Li, Randall H Friedline, Jason K Kim, Julie Lihua Zhu, David A Guertin, Yong-Xu Wang
A brown fat-enriched adipokine Adissp controls adipose thermogenesis and glucose homeostasis. Nature communications 13 (1) (2022)
Qingbo Chen, Lei Huang, Dong-Ning Pan, Kai Hu, Rui Li, Randall H Friedline, Jason K Kim, Julie Lihua Zhu, David A Guertin, Yong-Xu Wang
A brown fat-enriched adipokine Adissp controls adipose thermogenesis and glucose homeostasis. Nature communications 13 (1) (2022)
Shun-Qing Liang, Pengpeng Liu, Jordan L Smith, Esther Mintzer, Stacy Maitland, Xiaolong Dong, Qiyuan Yang, Jonathan Lee, Cole M Haynes, Julie Lihua Zhu, Jonathan K Watts, Erik J Sontheimer, Scot A Wolfe, Wen Xue
Genome-wide detection of CRISPR editing in vivo using GUIDE-tag. Nature communications 13 (1) (2022)
Osama Garwain, Xiaoming Sun, Divya Ramalingam Iyer, Rui Li, Julie Lihua Zhu, Paul D Kaufman
The chromatin-binding domain of Ki-67 together with p53 protects human chromosomes from mitotic damage. Proceedings of the National Academy of Sciences of the United States of America 118 (32) (2022)
Qingbo Chen, Lei Huang, Dong-Ning Pan, Kai Hu, Rui Li, Randall H Friedline, Jason K Kim, Julie Lihua Zhu, David A Guertin, Yong-Xu Wang
A brown fat-enriched adipokine Adissp controls adipose thermogenesis and glucose homeostasis. Nature communications 13 (1) (2022)
Chujiao Lin, Qiyuan Yang, Dongsheng Guo, Jun Xie, Yeon-Suk Yang, Sachin Chaugule, Ngoc DeSouza, Won-Taek Oh, Rui Li, Zhihao Chen, Aijaz A John, Qiang Qiu, Julie Lihua Zhu, Matthew B Greenblatt, Sankar Ghosh, Shaoguang Li, Guangping Gao, Cole M Haynes, Charles P Emerson, Jae-Hyuck Shim
Impaired mitochondrial oxidative metabolism in skeletal progenitor cells leads to musculoskeletal disintegration. Nature communications 13 (1) (2022)
Melanie R Walker, Hira Lal Goel, Dimpi Mukhopadhyay, Peter Chhoy, Emmet R Karner, Jennifer L Clark, Haibo Liu, Rui Li, Julie Lihua Zhu, Shuhui Chen, Lara K Mahal, Barbara A Bensing, Arthur M Mercurio
O-linked α2,3 sialylation defines stem cell populations in breast cancer. Science advances 8 (1) (2022)
Qingbo Chen, Lei Huang, Dong-Ning Pan, Kai Hu, Rui Li, Randall H Friedline, Jason K Kim, Julie Lihua Zhu, David A Guertin, Yong-Xu Wang
A brown fat-enriched adipokine Adissp controls adipose thermogenesis and glucose homeostasis. Nature communications 13 (1) (2022)
Sukanya Iyer, Aamir Mir, Joel Vega-Badillo, Benjamin P Roscoe, Raed Ibraheim, Julie Lihua Zhu, Jooyoung Lee, Pengpeng Liu, Kevin Luk, Esther Mintzer, Dongsheng Guo, Josias Soares de Brito, Charles P Emerson, Phillip D Zamore, Erik J Sontheimer, Scot A Wolfe
Efficient Homology-Directed Repair with Circular Single-Stranded DNA Donors. The CRISPR journal 5 (5) (2022)
Michelle M Conti, Julie M Ghizzoni, Ana Gil-Bona, Wen Wang, Michael Costanzo, Rui Li, Mackenzie J Flynn, Julie Lihua Zhu, Chad L Myers, Charles Boone, Brenda J Andrews, Jennifer A Benanti
Repression of essential cell cycle genes increases cellular fitness. PLoS genetics 18 (8) (2022)
Qingbo Chen, Lei Huang, Dong-Ning Pan, Kai Hu, Rui Li, Randall H Friedline, Jason K Kim, Julie Lihua Zhu, David A Guertin, Yong-Xu Wang
A brown fat-enriched adipokine Adissp controls adipose thermogenesis and glucose homeostasis. Nature communications 13 (1) (2022)
Niraj K Nirala, Qi Li, Prachi N Ghule, Hsi-Ju Chen, Rui Li, Julie Lihua Zhu, Ruijia Wang, Nicholas P Rice, Junhao Mao, Janet L Stein, Gary S Stein, Andre J van Wijnen, Y Tony Ip
Hinfp is a guardian of the somatic genome by repressing transposable elements. Proceedings of the National Academy of Sciences of the United States of America 118 (41) (2021)
Daniel Hidalgo, Bejder Jacob, Ramona Pop, Kyle J Gellatly, Yung Hwang, S Maxwell Scalf, Anna E Eastman, Jane-Jane Chen, Julie Lihua Zhu, Jules A A C Heuberger, Shangqin Guo, Mark J Koury, Nikolai Baastrup Nordsborg, Merav Socolovsky
EpoR stimulates rapid cycling and larger red cells during mouse and human erythropoiesis. Nature communications 12 (1) (2021)
Tomer Shpilka, YunGuang Du, Qiyuan Yang, Andrew Melber, Nandhitha Uma Naresh, Joshua Lavelle, Sookyung Kim, Pengpeng Liu, Hilla Weidberg, Rui Li, Jun Yu, Julie Lihua Zhu, Lara Strittmatter, Cole M Haynes
UPRmt scales mitochondrial network expansion with protein synthesis via mitochondrial import in Caenorhabditis elegans. Nature communications 12 (1) (2021)
Cassandra M Leech, Mackenzie J Flynn, Heather E Arsenault, Jianhong Ou, Haibo Liu, Julie Lihua Zhu, Jennifer A Benanti
The coordinate actions of calcineurin and Hog1 mediate the stress response through multiple nodes of the cell cycle network. PLoS genetics 16 (4) (2020)
Jianhong Ou, Haibo Liu, Niraj K Nirala, Alexey Stukalov, Usha R Acharya, Michael R Green, Julie Lihua Zhu
dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data. PloS one 15 (11) (2020)
Rui Li, Kai Hu, Haibo Liu, Michael R Green, Julie Lihua Zhu
OneStopRNAseq: A Web Application for Comprehensive and Efficient Analyses of RNA-Seq Data. Genes 11 (10) (2020)
Anne E Carlisle, Namgyu Lee, Asia N Matthew-Onabanjo, Meghan E Spears, Sung Jin Park, Daniel Youkana, Mihir B Doshi, Austin Peppers, Rui Li, Alexander B Joseph, Miles Smith, Karl Simin, Julie Lihua Zhu, Paul L Greer, Leslie M Shaw, Dohoon Kim
Selenium detoxification is required for cancer-cell survival. Nature metabolism 2 (7) (2020)
Jianhong Ou, Scot A Wolfe, Michael H Brodsky, Julie Lihua Zhu
motifStack for the analysis of transcription factor binding site evolution. Nature methods 15 (1) (2019)
Jianhong Ou, Julie Lihua Zhu
trackViewer: a Bioconductor package for interactive and integrative visualization of multi-omics data. Nature methods 16 (6) (2019)
Chun-Qing Song, Tingting Jiang, Michelle Richter, Luke H Rhym, Luke W Koblan, Maria Paz Zafra, Emma M Schatoff, Jordan L Doman, Yueying Cao, Lukas E Dow, Julie Lihua Zhu, Daniel G Anderson, David R Liu, Hao Yin, Wen Xue
Adenine base editing in an adult mouse model of tyrosinaemia. Nature biomedical engineering 4 (1) (2019)
Anastassiia Vertii, Jianhong Ou, Jun Yu, Aimin Yan, Hervé Pagès, Haibo Liu, Julie Lihua Zhu, Paul D Kaufman
Two contrasting classes of nucleolus-associated domains in mouse fibroblast heterochromatin. Genome research 29 (8) (2019)
Mehmet Fatih Bolukbasi, Pengpeng Liu, Kevin Luk, Samantha F Kwok, Ankit Gupta, Nadia Amrani, Erik J Sontheimer, Julie Lihua Zhu, Scot A Wolfe
Orthogonal Cas9-Cas9 chimeras provide a versatile platform for genome editing. Nature communications 9 (1) (2018)
Ameer L Elaimy, Santosh Guru, Cheng Chang, Jianhong Ou, John J Amante, Julie Lihua Zhu, Hira Lal Goel, Arthur M Mercurio
VEGF-neuropilin-2 signaling promotes stem-like traits in breast cancer cells by TAZ-mediated repression of the Rac GAP β2-chimaerin. Science signaling 11 (528) (2018)
Mehmet Fatih Bolukbasi, Pengpeng Liu, Kevin Luk, Samantha F Kwok, Ankit Gupta, Nadia Amrani, Erik J Sontheimer, Julie Lihua Zhu, Scot A Wolfe
Publisher Correction: Orthogonal Cas9-Cas9 chimeras provide a versatile platform for genome editing. Nature communications 9 (1) (2018)
Hao Yin, Chun-Qing Song, Sneha Suresh, Qiongqiong Wu, Stephen Walsh, Luke Hyunsik Rhym, Esther Mintzer, Mehmet Fatih Bolukbasi, Julie Lihua Zhu, Kevin Kauffman, Haiwei Mou, Alicia Oberholzer, Junmei Ding, Suet-Yan Kwan, Roman L Bogorad, Tatiana A Prikazchikova, Victor Koteliansky, Scot A Wolfe, Wen Xue, Robert Langer, Daniel G Anderson
Structure-guided chemical modification of guide RNA enables potent non-viral in vivo genome editing. Nature biotechnology 35 (12) (2017)

Julie Lihua Zhu.css-eqlu8i{font-size:small;padding-left:4px;} (Lihua Julie Zhu)

Publication Activity (10 Years)

Top Topics

Top Venues

Julie Lihua Zhu (Lihua Julie Zhu)