Richard J Orton (Richard Orton)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 35

Top Venues

University of Glasgow

University of Edinburgh (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Glasgow Oct 1o 2014

United Kingdom

Bioinformatician :: Centre for Virus Research

Education History

University of Edinburgh Oct 1o 2000 - Oct 1o 2003

United Kingdom

PHD :: Institute of Cell and Molecular Biology

Publications

Kathy K Li, Betty Lau, Nicolás M Suárez, Salvatore Camiolo, Rory Gunson, Andrew J Davison, Richard J Orton
Direct Nanopore Sequencing of Human Cytomegalovirus Genomes from High-Viral-Load Clinical Samples. Viruses 15 (6) (2023)
Mafalda Viana, Julio A Benavides, Alice Broos, Darcy Ibañez Loayza, Ruby Niño, Jordan Bone, Ana da Silva Filipe, Richard J Orton, William Valderrama, Jason Matthiopoulos, Daniel G Streicker
Effects of culling vampire bats on the spatial spread and spillover of rabies virus. Science advances 9 (10) (2023)
Kathy K Li, Betty Lau, Nicolás M Suárez, Salvatore Camiolo, Rory Gunson, Andrew J Davison, Richard J Orton
Direct Nanopore Sequencing of Human Cytomegalovirus Genomes from High-Viral-Load Clinical Samples. Viruses 15 (6) (2023)
Kathy K Li, Betty Lau, Nicolás M Suárez, Salvatore Camiolo, Rory Gunson, Andrew J Davison, Richard J Orton
Direct Nanopore Sequencing of Human Cytomegalovirus Genomes from High-Viral-Load Clinical Samples. Viruses 15 (6) (2023)
Mafalda Viana, Julio A Benavides, Alice Broos, Darcy Ibañez Loayza, Ruby Niño, Jordan Bone, Ana da Silva Filipe, Richard J Orton, William Valderrama, Jason Matthiopoulos, Daniel G Streicker
Effects of culling vampire bats on the spatial spread and spillover of rabies virus. Science advances 9 (10) (2023)
Sarah Jones, Grace B Tyson, Richard J Orton, Katherine Smollett, Federica Manna, Kirsty Kwok, Nicolás M Suárez, Nicola Logan, Michael McDonald, Andrea Bowie, Ana Da Silva Filipe, Brian J Willett, William Weir, Margaret J Hosie
SARS-CoV-2 in Domestic UK Cats from Alpha to Omicron: Swab Surveillance and Case Reports. Viruses 15 (8) (2023)
Mafalda Viana, Julio A Benavides, Alice Broos, Darcy Ibañez Loayza, Ruby Niño, Jordan Bone, Ana da Silva Filipe, Richard J Orton, William Valderrama, Jason Matthiopoulos, Daniel G Streicker
Effects of culling vampire bats on the spatial spread and spillover of rabies virus. Science advances 9 (10) (2023)
Mafalda Viana, Julio A Benavides, Alice Broos, Darcy Ibañez Loayza, Ruby Niño, Jordan Bone, Ana da Silva Filipe, Richard J Orton, William Valderrama, Jason Matthiopoulos, Daniel G Streicker
Effects of culling vampire bats on the spatial spread and spillover of rabies virus. Science advances 9 (10) (2023)
Paul C D Johnson, Sara Hägglund, Katarina Näslund, Gilles Meyer, Geraldine Taylor, Richard J Orton, Siamak Zohari, Daniel T Haydon, Jean-François Valarcher
Evaluating the potential of whole-genome sequencing for tracing transmission routes in experimental infections and natural outbreaks of bovine respiratory syncytial virus. Veterinary research 53 (1) (2022)
Derek W Wright, William T Harvey, Joseph Hughes, MacGregor Cox, Thomas P Peacock, Rachel Colquhoun, Benjamin C Jackson, Richard J Orton, Morten Nielsen, Nienyun Sharon Hsu, null null, Ewan M Harrison, Thushan I de Silva, Andrew Rambaut, Sharon J Peacock, David L Robertson, Alessandro M Carabelli
Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer. Virus evolution 8 (1) (2022)
Darren P Martin, Spyros Lytras, Alexander G Lucaci, Wolfgang Maier, Björn Grüning, Stephen D Shank, Steven Weaver, Oscar A MacLean, Richard J Orton, Philippe Lemey, Maciej F Boni, Houriiyah Tegally, Gordon W Harkins, Cathrine Scheepers, Jinal N Bhiman, Josie Everatt, Daniel G Amoako, James Emmanuel San, Jennifer Giandhari, Alex Sigal, null null, Carolyn Williamson, Nei-Yuan Hsiao, Anne von Gottberg, Arne De Klerk, Robert W Shafer, David L Robertson, Robert J Wilkinson, B Trevor Sewell, Richard Lessells, Anton Nekrutenko, Allison J Greaney, Tyler N Starr, Jesse D Bloom, Ben Murrell, Eduan Wilkinson, Ravindra K Gupta, Tulio de Oliveira, Sergei L Kosakovsky Pond
Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function. Molecular biology and evolution 39 (4) (2022)
Maria Manali, Laura A Bissett, Julien A R Amat, Nicola Logan, Sam Scott, Ellen C Hughes, William T Harvey, Richard J Orton, Emma C Thomson, Rory N Gunson, Mafalda Viana, Brian J Willett, Pablo Ramiro Murcia
SARS-CoV-2 evolution and patient immunological history shape the breadth and potency of antibody-mediated immunity. The Journal of infectious diseases (2022)
Paul C D Johnson, Sara Hägglund, Katarina Näslund, Gilles Meyer, Geraldine Taylor, Richard J Orton, Siamak Zohari, Daniel T Haydon, Jean-François Valarcher
Evaluating the potential of whole-genome sequencing for tracing transmission routes in experimental infections and natural outbreaks of bovine respiratory syncytial virus. Veterinary research 53 (1) (2022)
André Gömer, Richard J P Brown, Stephanie Pfaender, Katja Deterding, Gábor Reuter, Richard J Orton, Stefan Seitz, C-Thomas Bock, Jessika M V Cavalleri, Thomas Pietschmann, Heiner Wedemeyer, Eike Steinmann, Daniel Todt
Intra-host analysis of hepaciviral glycoprotein evolution reveals signatures associated with viral persistence and clearance. Virus evolution 8 (1) (2022)
Peter J Walker, Stuart G Siddell, Elliot J Lefkowitz, Arcady R Mushegian, Evelien M Adriaenssens, Poliane Alfenas-Zerbini, Donald M Dempsey, Bas E Dutilh, María Laura García, R Curtis Hendrickson, Sandra Junglen, Mart Krupovic, J Thomas Beatty, Amy J Lambert, Małgorzata B Łobocka, Hanna M Oksanen, Richard J Orton, David L Robertson, Luisa Rubino, Sead Sabanadzovic, Peter Simmonds, Donald B Smith, Nobuhiro Suzuki, Koenraad Van Doorslaer, Anne-Mieke Vandamme, Darren P Martin, Francisco Murilo Zerbini
Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022). Archives of virology 167 (11) (2022)
Paul C D Johnson, Sara Hägglund, Katarina Näslund, Gilles Meyer, Geraldine Taylor, Richard J Orton, Siamak Zohari, Daniel T Haydon, Jean-François Valarcher
Evaluating the potential of whole-genome sequencing for tracing transmission routes in experimental infections and natural outbreaks of bovine respiratory syncytial virus. Veterinary research 53 (1) (2022)
Sejal Modha, David L Robertson, Joseph Hughes, Richard J Orton
Quantifying and Cataloguing Unknown Sequences within Human Microbiomes. mSystems 7 (2) (2022)
Paul C D Johnson, Sara Hägglund, Katarina Näslund, Gilles Meyer, Geraldine Taylor, Richard J Orton, Siamak Zohari, Daniel T Haydon, Jean-François Valarcher
Evaluating the potential of whole-genome sequencing for tracing transmission routes in experimental infections and natural outbreaks of bovine respiratory syncytial virus. Veterinary research 53 (1) (2022)
Sema Nickbakhsh, Joseph Hughes, Nicolaos Christofidis, Emily Griffiths, Sharif Shaaban, Jessica Enright, Katherine Smollett, Kyriaki Nomikou, Natasha Palmalux, Lily Tong, Stephen Carmichael, Vattipally B Sreenu, Richard J Orton, Emily J Goldstein, Rachael M Tomb, null null, Kate Templeton, Rory N Gunson, Ana da Silva Filipe, Catriona Milosevic, Emma C Thomson, David L Robertson, Matthew T G Holden, Christopher J R Illingworth, Alison Smith-Palmer
Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning. Scientific reports 12 (1) (2022)
Suzannah J Rihn, Andres Merits, Siddharth Bakshi, Matthew L Turnbull, Arthur Wickenhagen, Akira J T Alexander, Carla Baillie, Benjamin Brennan, Fiona Brown, Kirstyn Brunker, Steven R Bryden, Kerry A Burness, Stephen Carmichael, Sarah J Cole, Vanessa M Cowton, Paul Davies, Chris Davis, Giuditta De Lorenzo, Claire L Donald, Mark Dorward, James I Dunlop, Matthew Elliott, Mazigh Fares, Ana da Silva Filipe, Joseph R Freitas, Wilhelm Furnon, Rommel J Gestuveo, Anna Geyer, Daniel Giesel, Daniel Max Goldfarb, Nicola Goodman, Rory Gunson, C James Hastie, Vanessa Herder, Joseph Hughes, Clare Johnson, Natasha Johnson, Alain Kohl, Karen Kerr, Hannah Leech, Laura Sandra Lello, Kathy Li, Gauthier Lieber, Xiang Liu, Rajendra Lingala, Colin Loney, Daniel Mair, Marion J McElwee, Steven McFarlane, Jenna Nichols, Kyriaki Nomikou, Anne Orr, Richard J Orton, Massimo Palmarini, Yasmin Amy Parr, Rute Maria Pinto, Samantha Raggett, Elaine Reid, David L Robertson, Jamie Royle, Natalia Cameron-Ruiz, James G Shepherd, Katherine Smollett, Douglas G Stewart, Meredith E Stewart, Elena Sugrue, Agnieszka M Szemiel, Aislynn Taggart, Emma C Thomson, Lily Tong, Leah S Torrie, Rachel Toth, Margus Varjak, Sainan Wang, Stuart G Wilkinson, Paul G Wyatt, Eva Zusinaite, Dario R Alessi, Arvind H Patel, Ali Zaid, Sam J Wilson, Suresh Mahalingam
A plasmid DNA-launched SARS-CoV-2 reverse genetics system and coronavirus toolkit for COVID-19 research. PLoS biology 19 (2) (2021)
Chris Davis, Nicola Logan, Grace Tyson, Richard J Orton, William T Harvey, Jonathan S Perkins, Guy Mollett, Rachel M Blacow, null null, Thomas P Peacock, Wendy S Barclay, Peter Cherepanov, Massimo Palmarini, Pablo Ramiro Murcia, Arvind H Patel, David L Robertson, John Haughney, Emma C Thomson, Brian J Willett, null null
Reduced neutralisation of the Delta (B.1.617.2) SARS-CoV-2 variant of concern following vaccination. PLoS pathogens 17 (12) (2021)
Laura M Bergner, Nardus Mollentze, Richard J Orton, Carlos Tello, Alice Broos, Roman Biek, Daniel G Streicker
Characterizing and Evaluating the Zoonotic Potential of Novel Viruses Discovered in Vampire Bats. Viruses 13 (2) (2021)
Peter J Walker, Stuart G Siddell, Elliot J Lefkowitz, Arcady R Mushegian, Evelien M Adriaenssens, Poliane Alfenas-Zerbini, Andrew J Davison, Donald M Dempsey, Bas E Dutilh, María Laura García, Balázs Harrach, Robert L Harrison, R Curtis Hendrickson, Sandra Junglen, Nick J Knowles, Mart Krupovic, J Thomas Beatty, Amy J Lambert, Małgorzata B Łobocka, Max L Nibert, Hanna M Oksanen, Richard J Orton, David L Robertson, Luisa Rubino, Sead Sabanadzovic, Peter Simmonds, Donald B Smith, Nobuhiro Suzuki, Koenraad Van Doorslaer, Anne-Mieke Vandamme, Darren P Martin, Francisco Murilo Zerbini
Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021). Archives of virology 166 (9) (2021)
Agnieszka M Szemiel, Andres Merits, Richard J Orton, Oscar A MacLean, Rute Maria Pinto, Arthur Wickenhagen, Gauthier Lieber, Matthew L Turnbull, Sainan Wang, Wilhelm Furnon, Nicolás M Suárez, Daniel Mair, Ana da Silva Filipe, Brian J Willett, Sam J Wilson, Arvind H Patel, Emma C Thomson, Massimo Palmarini, Alain Kohl, Meredith E Stewart
In vitro selection of Remdesivir resistance suggests evolutionary predictability of SARS-CoV-2. PLoS pathogens 17 (9) (2021)
Andrew E Shaw, Suzannah J Rihn, Nardus Mollentze, Arthur Wickenhagen, Douglas G Stewart, Richard J Orton, Srikeerthana Kuchi, Siddharth Bakshi, Mila Rodriguez Collados, Matthew L Turnbull, Joseph Busby, Quan Gu, Katherine Smollett, Connor G G Bamford, Elena Sugrue, Paul C D Johnson, Ana da Silva Filipe, Alfredo Castello, Daniel G Streicker, David L Robertson, Massimo Palmarini, Sam J Wilson
The antiviral state has shaped the CpG composition of the vertebrate interferome to avoid self-targeting. PLoS biology 19 (9) (2021)
Laura M Bergner, Richard J Orton, Alice Broos, Carlos Tello, Daniel J Becker, Jorge E Carrera, Arvind H Patel, Roman Biek, Daniel G Streicker
Diversification of mammalian deltaviruses by host shifting. Proceedings of the National Academy of Sciences of the United States of America 118 (3) (2021)
Emma L A Howson, Richard J Orton, Valerie Mioulet, Tiziana Lembo, Donald P King, Veronica L Fowler
GoPrime: Development of an In Silico Framework to Predict the Performance of Real-Time PCR Primers and Probes Using Foot-and-Mouth Disease Virus as a Model. Pathogens (Basel, Switzerland) 9 (4) (2020)
Laura M Bergner, Richard J Orton, Daniel G Streicker
Complete Genome Sequence of an Alphacoronavirus from Common Vampire Bats in Peru. Microbiology resource announcements 9 (34) (2020)
Peter J Walker, Stuart G Siddell, Elliot J Lefkowitz, Arcady R Mushegian, Evelien M Adriaenssens, Donald M Dempsey, Bas E Dutilh, Balázs Harrach, Robert L Harrison, R Curtis Hendrickson, Sandra Junglen, Nick J Knowles, Andrew M Kropinski, Mart Krupovic, J Thomas Beatty, Max L Nibert, Richard J Orton, Luisa Rubino, Sead Sabanadzovic, Peter Simmonds, Donald B Smith, Darren P Martin, Francisco Murilo Zerbini, Andrew J Davison
Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020). Archives of virology 165 (11) (2020)
Jordan J Clark, Janice Gilray, Richard J Orton, Margaret Baird, Gavin Wilkie, Ana da Silva Filipe, Nicholas Johnson, Colin J McInnes, Alain Kohl, Roman Biek
Population genomics of louping ill virus provide new insights into the evolution of tick-borne flaviviruses. PLoS neglected tropical diseases 14 (9) (2020)
Richard J Orton, Caroline F Wright, Donald P King, Daniel T Haydon
Estimating viral bottleneck sizes for FMDV transmission within and between hosts and implications for the rate of viral evolution. Interface focus 10 (1) (2019)
Ulrik Fahnøe, Anders Gorm Pedersen, Camille Melissa Johnston, Richard J Orton, Dirk Höper, Martin Beer, Jens Bukh, Graham J Belsham, Thomas Bruun Rasmussen
Virus Adaptation and Selection Following Challenge of Animals Vaccinated against Classical Swine Fever Virus. Viruses 11 (10) (2019)
Laura M Bergner, Richard J Orton, Julio A Benavides, Daniel J Becker, Carlos Tello, Roman Biek, Daniel G Streicker
Demographic and environmental drivers of metagenomic viral diversity in vampire bats. Molecular ecology 29 (1) (2019)
Simon A Babayan, Richard J Orton, Daniel G Streicker
Predicting reservoir hosts and arthropod vectors from evolutionary signatures in RNA virus genomes. Science (New York, N.Y.) 362 (6414) (2018)
Michael J Adams, Elliot J Lefkowitz, Andrew M Q King, Balázs Harrach, Robert L Harrison, Nick J Knowles, Andrew M Kropinski, Mart Krupovic, J Thomas Beatty, Arcady R Mushegian, Max L Nibert, Sead Sabanadzovic, Hélène Sanfaçon, Stuart G Siddell, Peter Simmonds, Darren P Martin, Francisco Murilo Zerbini, Richard J Orton, Donald B Smith, Alexander E Gorbalenya, Andrew J Davison
50 years of the International Committee on Taxonomy of Viruses: progress and prospects. Archives of virology 162 (5) (2017)

Richard J Orton.css-eqlu8i{font-size:small;padding-left:4px;} (Richard Orton)

Publication Activity (10 Years)

Top Topics

Top Venues

Richard J Orton (Richard Orton)