Rachel Colquhoun

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 16

Top Topics

African American

Respiratory Syndrome Coronavirus

Genetic Diversity

Cross Sectional

Top Venues

Virus evolution

Science (New York, N.Y.)

PLOS global public health

This page only lists publications with an associated author ORCID identifier.

Publications

Áine Niamh O'Toole, Rachel Colquhoun, Corey Ansley, Catherine Troman, Daniel Maloney, Zoe Vance, Joyce Akello, Erika Bujaki, Manasi Majumdar, Adnan Khurshid, Yasir Arshad, Muhammad Masroor Alam, Javier Martin, Alexander G Shaw, Nicholas C Grassly, Andrew Rambaut
Automated detection and classification of polioviruses from nanopore sequencing reads using piranha. Virus evolution 10 (1) (2024)
Áine Niamh O'Toole, Rachel Colquhoun, Corey Ansley, Catherine Troman, Daniel Maloney, Zoe Vance, Joyce Akello, Erika Bujaki, Manasi Majumdar, Adnan Khurshid, Yasir Arshad, Muhammad Masroor Alam, Javier Martin, Alexander G Shaw, Nicholas C Grassly, Andrew Rambaut
Automated detection and classification of polioviruses from nanopore sequencing reads using piranha. Virus evolution 10 (1) (2024)
Joseph L-H Tsui, John T McCrone, Ben C Lambert, Sumali Bajaj, Rhys P D Inward, Paolo Bosetti, Rosario Evans Pena, Houriiyah Tegally, Verity Hill, Alexander Eugene Zarebski, Thomas P Peacock, Luyang Liu, Neo Wu, Megan Davis, Issac I Bogoch, Kamran Khan, Meaghan Kall, Nurin Iwani Binti Abdul Aziz, Rachel Colquhoun, Áine Niamh O'Toole, Benjamin C Jackson, Abhishek Dasgupta, Eduan Wilkinson, Tulio de Oliveira, null null, Thomas Richard Connor, Nicholas James Loman, Vittoria Colizza, Christophe Fraser, Erik M Volz, Xiang Ji, Bernardo Gutierrez, Meera Chand, Simon Dellicour, Simon Cauchemez, Jayna Ragwani, Marc A Suchard, Philippe Lemey, Andrew Rambaut, Oliver George Pybus, Moritz U G Kraemer
Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1. Science (New York, N.Y.) 381 (6655) (2023)
Verity Hill, Louis Du Plessis, Thomas P Peacock, Dinesh Aggarwal, Rachel Colquhoun, Alessandro M Carabelli, Nicholas Ellaby, Eileen Gallagher, Natalie Groves, Benjamin C Jackson, John T McCrone, Áine Niamh O'Toole, Anna Price, Theo Sanderson, Emily Scher, Joel Southgate, Erik M Volz, Wendy S Barclay, Jeffrey C Barrett, Meera Chand, Thomas Richard Connor, Ian Goodfellow, Ravindra K Gupta, Ewan M Harrison, Nicholas Loman, Richard Myers, David L Robertson, Oliver George Pybus, Andrew Rambaut
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK. Virus evolution 8 (2) (2022)
Verity Hill, Louis Du Plessis, Thomas P Peacock, Dinesh Aggarwal, Rachel Colquhoun, Alessandro M Carabelli, Nicholas Ellaby, Eileen Gallagher, Natalie Groves, Benjamin C Jackson, John T McCrone, Áine Niamh O'Toole, Anna Price, Theo Sanderson, Emily Scher, Joel Southgate, Erik M Volz, Wendy S Barclay, Jeffrey C Barrett, Meera Chand, Thomas Richard Connor, Ian Goodfellow, Ravindra K Gupta, Ewan M Harrison, Nicholas Loman, Richard Myers, David L Robertson, Oliver George Pybus, Andrew Rambaut
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK. Virus evolution 8 (2) (2022)
Derek W Wright, William T Harvey, Joseph Hughes, MacGregor Cox, Thomas P Peacock, Rachel Colquhoun, Benjamin C Jackson, Richard J Orton, Morten Nielsen, Nienyun Sharon Hsu, null null, Ewan M Harrison, Thushan I de Silva, Andrew Rambaut, Sharon J Peacock, David L Robertson, Alessandro M Carabelli
Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer. Virus evolution 8 (1) (2022)
Verity Hill, Louis Du Plessis, Thomas P Peacock, Dinesh Aggarwal, Rachel Colquhoun, Alessandro M Carabelli, Nicholas Ellaby, Eileen Gallagher, Natalie Groves, Benjamin C Jackson, John T McCrone, Áine Niamh O'Toole, Anna Price, Theo Sanderson, Emily Scher, Joel Southgate, Erik M Volz, Wendy S Barclay, Jeffrey C Barrett, Meera Chand, Thomas Richard Connor, Ian Goodfellow, Ravindra K Gupta, Ewan M Harrison, Nicholas Loman, Richard Myers, David L Robertson, Oliver George Pybus, Andrew Rambaut
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK. Virus evolution 8 (2) (2022)
Verity Hill, Louis Du Plessis, Thomas P Peacock, Dinesh Aggarwal, Rachel Colquhoun, Alessandro M Carabelli, Nicholas Ellaby, Eileen Gallagher, Natalie Groves, Benjamin C Jackson, John T McCrone, Áine Niamh O'Toole, Anna Price, Theo Sanderson, Emily Scher, Joel Southgate, Erik M Volz, Wendy S Barclay, Jeffrey C Barrett, Meera Chand, Thomas Richard Connor, Ian Goodfellow, Ravindra K Gupta, Ewan M Harrison, Nicholas Loman, Richard Myers, David L Robertson, Oliver George Pybus, Andrew Rambaut
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK. Virus evolution 8 (2) (2022)
Verity Hill, Louis Du Plessis, Thomas P Peacock, Dinesh Aggarwal, Rachel Colquhoun, Alessandro M Carabelli, Nicholas Ellaby, Eileen Gallagher, Natalie Groves, Benjamin C Jackson, John T McCrone, Áine Niamh O'Toole, Anna Price, Theo Sanderson, Emily Scher, Joel Southgate, Erik M Volz, Wendy S Barclay, Jeffrey C Barrett, Meera Chand, Thomas Richard Connor, Ian Goodfellow, Ravindra K Gupta, Ewan M Harrison, Nicholas Loman, Richard Myers, David L Robertson, Oliver George Pybus, Andrew Rambaut
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK. Virus evolution 8 (2) (2022)
John T McCrone, Verity Hill, Sumali Bajaj, Rosario Evans Pena, Ben C Lambert, Rhys P D Inward, Samir Bhatt, Erik M Volz, Christopher Ruis, Simon Dellicour, Guy Baele, Alexander E Zarebski, Adam Sadilek, Neo Wu, Aaron Schneider, Xiang Ji, Jayna Raghwani, Benjamin C Jackson, Rachel Colquhoun, Áine O'Toole, Thomas P Peacock, Kate Twohig, Simon Thelwall, Gavin Dabrera, Richard Myers, null null, Nuno Rodrigues Faria, Carmen Huber, Isaac I Bogoch, Kamran Khan, Louis du Plessis, Jeffrey C Barrett, David M Aanensen, Wendy S Barclay, Meera Chand, Thomas Richard Connor, Nicholas J Loman, Marc A Suchard, Oliver George Pybus, Andrew Rambaut, Moritz U G Kraemer
Context-specific emergence and growth of the SARS-CoV-2 Delta variant. Nature 610 (7930) (2022)
Áine Niamh O'Toole, Verity Hill, Benjamin C Jackson, Rebecca Dewar, Nikita Sahadeo, Rachel Colquhoun, Stefan Rooke, John T McCrone, Kate Duggan, Martin P McHugh, Samuel M Nicholls, Radoslaw Poplawski, null null, null null, David Aanensen, Matt Holden, Tom Connor, Nick Loman, Ian Goodfellow, Christine V F Carrington, Kate Templeton, Andrew Rambaut
Genomics-informed outbreak investigations of SARS-CoV-2 using civet. PLOS global public health 2 (12) (2022)
Verity Hill, Louis Du Plessis, Thomas P Peacock, Dinesh Aggarwal, Rachel Colquhoun, Alessandro M Carabelli, Nicholas Ellaby, Eileen Gallagher, Natalie Groves, Benjamin C Jackson, John T McCrone, Áine Niamh O'Toole, Anna Price, Theo Sanderson, Emily Scher, Joel Southgate, Erik M Volz, Wendy S Barclay, Jeffrey C Barrett, Meera Chand, Thomas Richard Connor, Ian Goodfellow, Ravindra K Gupta, Ewan M Harrison, Nicholas Loman, Richard Myers, David L Robertson, Oliver George Pybus, Andrew Rambaut
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK. Virus evolution 8 (2) (2022)
Verity Hill, Louis Du Plessis, Thomas P Peacock, Dinesh Aggarwal, Rachel Colquhoun, Alessandro M Carabelli, Nicholas Ellaby, Eileen Gallagher, Natalie Groves, Benjamin C Jackson, John T McCrone, Áine Niamh O'Toole, Anna Price, Theo Sanderson, Emily Scher, Joel Southgate, Erik M Volz, Wendy S Barclay, Jeffrey C Barrett, Meera Chand, Thomas Richard Connor, Ian Goodfellow, Ravindra K Gupta, Ewan M Harrison, Nicholas Loman, Richard Myers, David L Robertson, Oliver George Pybus, Andrew Rambaut
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK. Virus evolution 8 (2) (2022)
Louis du Plessis, John T McCrone, Alexander Eugene Zarebski, Verity Hill, Christopher Ruis, Bernardo Gutierrez, Jayna Ragwani, Jordan Ashworth, Rachel Colquhoun, Thomas Richard Connor, Nuno Rodrigues Faria, Benjamin C Jackson, Nicholas James Loman, Áine Niamh O'Toole, Samuel M Nicholls, Kris Varun Parag, Emily Scher, Tetyana I Vasylyeva, Erik M Volz, Alexander G Watts, Isaac I Bogoch, Kamran Khan, null null, David M Aanensen, Moritz U G Kraemer, Andrew Rambaut, Oliver George Pybus
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK. Science (New York, N.Y.) 371 (6530) (2021)
Moritz U G Kraemer, Verity Hill, Christopher Ruis, Simon Dellicour, Sumali Bajaj, John T McCrone, Guy Baele, Kris Varun Parag, Anya Lindström Battle, Bernardo Gutierrez, Benjamin C Jackson, Rachel Colquhoun, Áine Niamh O'Toole, Brennan Klein, Alessandro Vespignani, null null, Erik M Volz, Nuno Rodrigues Faria, David M Aanensen, Nicholas James Loman, Louis du Plessis, Simon Cauchemez, Andrew Rambaut, Samuel V Scarpino, Oliver George Pybus
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence. Science (New York, N.Y.) 373 (6557) (2021)
Áine Niamh O'Toole, Emily Scher, Anthony Underwood, Benjamin C Jackson, Verity Hill, John T McCrone, Rachel Colquhoun, Chris Ruis, Khalil Abu-Dahab, Ben Taylor, Corin Yeats, Louis du Plessis, Daniel Maloney, Nathan C Medd, Stephen W Attwood, David M Aanensen, Edward C Holmes, Oliver George Pybus, Andrew Rambaut
Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool. Virus evolution 7 (2) (2021)