Bas E Dutilh (B E Dutilh)

Scopus Author ID Loop profile ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 62

Top Topics

Genome Wide Association

Antibiotic Resistance Genes

Wastewater Treatment

Top Venues

Archives of virology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Ling-Yi Wu, Yasas Wijesekara, Gonçalo J Piedade, Nikolaos Pappas, Corina P D Brussaard, Bas E Dutilh
Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes. Genome biology 25 (1) (2024)
Ernestina Hauptfeld, Nikolaos Pappas, Sandra van Iwaarden, Basten L Snoek, Andrea Aldas-Vargas, Bas E Dutilh, F A Bastiaan von Meijenfeldt
Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes. Nature communications 15 (1) (2024)
Ling-Yi Wu, Yasas Wijesekara, Gonçalo J Piedade, Nikolaos Pappas, Corina P D Brussaard, Bas E Dutilh
Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes. Genome biology 25 (1) (2024)
Piotr Rozwalak, Jakub Barylski, Yasas Wijesekara, Bas E Dutilh, Andrzej Zielezinski
Ultraconserved bacteriophage genome sequence identified in 1300-year-old human palaeofaeces. Nature communications 15 (1) (2024)
Ernestina Hauptfeld, Nikolaos Pappas, Sandra van Iwaarden, Basten L Snoek, Andrea Aldas-Vargas, Bas E Dutilh, F A Bastiaan von Meijenfeldt
Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes. Nature communications 15 (1) (2024)
Piotr Rozwalak, Jakub Barylski, Yasas Wijesekara, Bas E Dutilh, Andrzej Zielezinski
Ultraconserved bacteriophage genome sequence identified in 1300-year-old human palaeofaeces. Nature communications 15 (1) (2024)
Ling-Yi Wu, Yasas Wijesekara, Gonçalo J Piedade, Nikolaos Pappas, Corina P D Brussaard, Bas E Dutilh
Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes. Genome biology 25 (1) (2024)
Piotr Rozwalak, Jakub Barylski, Yasas Wijesekara, Bas E Dutilh, Andrzej Zielezinski
Ultraconserved bacteriophage genome sequence identified in 1300-year-old human palaeofaeces. Nature communications 15 (1) (2024)
Patrick A de Jonge, Bert-Jan H Van Den Born, Aeilko H Zwinderman, Max Nieuwdorp, Bas E Dutilh, Hilde J Herrema
Phylogeny and disease associations of a widespread and ancient intestinal bacteriophage lineage. Nature communications 15 (1) (2024)
Ernestina Hauptfeld, Nikolaos Pappas, Sandra van Iwaarden, Basten L Snoek, Andrea Aldas-Vargas, Bas E Dutilh, F A Bastiaan von Meijenfeldt
Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes. Nature communications 15 (1) (2024)
Ernestina Hauptfeld, Nikolaos Pappas, Sandra van Iwaarden, Basten L Snoek, Andrea Aldas-Vargas, Bas E Dutilh, F A Bastiaan von Meijenfeldt
Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes. Nature communications 15 (1) (2024)
Aldert L Zomer, Colin J Ingham, F A Bastiaan von Meijenfeldt, Álvaro Escobar Doncel, Gea Theodora van de Kerkhof, Raditijo Hamidjaja, Sanne Schouten, Lukas Schertel, Karin H Müller, Laura Catón, Richard L Hahnke, Henk Bolhuis, Silvia Vignolini, Bas E Dutilh
Structural color in the bacterial domain: The ecogenomics of a 2-dimensional optical phenotype. Proceedings of the National Academy of Sciences of the United States of America 121 (29) (2024)
Ling-Yi Wu, Yasas Wijesekara, Gonçalo J Piedade, Nikolaos Pappas, Corina P D Brussaard, Bas E Dutilh
Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes. Genome biology 25 (1) (2024)
Ling-Yi Wu, Yasas Wijesekara, Gonçalo J Piedade, Nikolaos Pappas, Corina P D Brussaard, Bas E Dutilh
Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes. Genome biology 25 (1) (2024)
Patrick A de Jonge, Bert-Jan H Van Den Born, Aeilko H Zwinderman, Max Nieuwdorp, Bas E Dutilh, Hilde J Herrema
Phylogeny and disease associations of a widespread and ancient intestinal bacteriophage lineage. Nature communications 15 (1) (2024)
Ling-Yi Wu, Yasas Wijesekara, Gonçalo J Piedade, Nikolaos Pappas, Corina P D Brussaard, Bas E Dutilh
Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes. Genome biology 25 (1) (2024)
Aldert L Zomer, Colin J Ingham, F A Bastiaan von Meijenfeldt, Álvaro Escobar Doncel, Gea Theodora van de Kerkhof, Raditijo Hamidjaja, Sanne Schouten, Lukas Schertel, Karin H Müller, Laura Catón, Richard L Hahnke, Henk Bolhuis, Silvia Vignolini, Bas E Dutilh
Structural color in the bacterial domain: The ecogenomics of a 2-dimensional optical phenotype. Proceedings of the National Academy of Sciences of the United States of America 121 (29) (2024)
Aldert L Zomer, Colin J Ingham, F A Bastiaan von Meijenfeldt, Álvaro Escobar Doncel, Gea Theodora van de Kerkhof, Raditijo Hamidjaja, Sanne Schouten, Lukas Schertel, Karin H Müller, Laura Catón, Richard L Hahnke, Henk Bolhuis, Silvia Vignolini, Bas E Dutilh
Structural color in the bacterial domain: The ecogenomics of a 2-dimensional optical phenotype. Proceedings of the National Academy of Sciences of the United States of America 121 (29) (2024)
Ling-Yi Wu, Yasas Wijesekara, Gonçalo J Piedade, Nikolaos Pappas, Corina P D Brussaard, Bas E Dutilh
Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes. Genome biology 25 (1) (2024)
Liliane S Oliveira, Alejandro Reyes, Bas E Dutilh, Arthur Gruber
Rational Design of Profile HMMs for Sensitive and Specific Sequence Detection with Case Studies Applied to Viruses, Bacteriophages, and Casposons. Viruses 15 (2) (2023)
José L López, Arista Fourie, Sanne W M Poppeliers, Nikolaos Pappas, Juan J Sánchez-Gil, Ronnie de Jonge, Bas E Dutilh
Growth rate is a dominant factor predicting the rhizosphere effect. The ISME journal (2023)
Bram van Dijk, Pauline Buffard, Andrew D Farr, Franz Giersdorf, Jeroen Meijer, Bas E Dutilh, Paul B Rainey
Identifying and tracking mobile elements in evolving compost communities yields insights into the nanobiome. ISME communications 3 (1) (2023)
F A Bastiaan von Meijenfeldt, Paulien Hogeweg, Bas E Dutilh
A social niche breadth score reveals niche range strategies of generalists and specialists. Nature ecology & evolution (2023)
Francisco Murilo Zerbini, Stuart G Siddell, Elliot J Lefkowitz, Arcady R Mushegian, Evelien M Adriaenssens, Poliane Alfenas-Zerbini, Donald M Dempsey, Bas E Dutilh, María Laura García, R Curtis Hendrickson, Sandra Junglen, Mart Krupovic, J Thomas Beatty, Amy J Lambert, Małgorzata B Łobocka, Hanna M Oksanen, David L Robertson, Luisa Rubino, Sead Sabanadzovic, Peter Simmonds, Donald B Smith, Nobuhiro Suzuki, Koenraad Van Doorslaer, Anne-Mieke Vandamme, Darren P Martin
Correction to: Changes to virus taxonomy and the ICTV Statutes ratifed by the International Committee on Taxonomy of Viruses (2023). Archives of virology 168 (11) (2023)
Liliane S Oliveira, Alejandro Reyes, Bas E Dutilh, Arthur Gruber
Rational Design of Profile HMMs for Sensitive and Specific Sequence Detection with Case Studies Applied to Viruses, Bacteriophages, and Casposons. Viruses 15 (2) (2023)
Liliane S Oliveira, Alejandro Reyes, Bas E Dutilh, Arthur Gruber
Rational Design of Profile HMMs for Sensitive and Specific Sequence Detection with Case Studies Applied to Viruses, Bacteriophages, and Casposons. Viruses 15 (2) (2023)
Evelien M Adriaenssens, Simon Roux, J Rodney Brister, Ilene Karsch-Mizrachi, J Thomas Beatty, Darren P Martin, Yi-Gang Tong, Alejandro Reyes, Cédric Lood, Elliot J Lefkowitz, Matthew B Sullivan, Robert A Edwards, Peter Simmonds, Luisa Rubino, Sead Sabanadzovic, Mart Krupovic, Bas E Dutilh
Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification. Nature biotechnology (2023)
Evelien M Adriaenssens, Simon Roux, J Rodney Brister, Ilene Karsch-Mizrachi, J Thomas Beatty, Darren P Martin, Yi-Gang Tong, Alejandro Reyes, Cédric Lood, Elliot J Lefkowitz, Matthew B Sullivan, Robert A Edwards, Peter Simmonds, Luisa Rubino, Sead Sabanadzovic, Mart Krupovic, Bas E Dutilh
Author Correction: Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification. Nature biotechnology (2023)
Francisco Murilo Zerbini, Stuart G Siddell, Elliot J Lefkowitz, Arcady R Mushegian, Evelien M Adriaenssens, Poliane Alfenas-Zerbini, Donald M Dempsey, Bas E Dutilh, María Laura García, R Curtis Hendrickson, Sandra Junglen, Mart Krupovic, J Thomas Beatty, Amy J Lambert, Małgorzata B Łobocka, Hanna M Oksanen, David L Robertson, Luisa Rubino, Sead Sabanadzovic, Peter Simmonds, Donald B Smith, Nobuhiro Suzuki, Koenraad Van Doorslaer, Anne-Mieke Vandamme, Darren P Martin
Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2023). Archives of virology 168 (7) (2023)
Carlijn E Bruggeling, Daniel R Garza, Soumia Achouiti, Wouter Mes, Bas E Dutilh, Annemarie Boleij
Optimized bacterial DNA isolation method for microbiome analysis of human tissues. MicrobiologyOpen 10 (3) (2022)
Patrick A de Jonge, Koen Wortelboer, Torsten P M Scheithauer, Bert-Jan H Van Den Born, Aeilko H Zwinderman, Franklin L Nobrega, Bas E Dutilh, Max Nieuwdorp, Hilde J Herrema
Gut virome profiling identifies a widespread bacteriophage family associated with metabolic syndrome. Nature communications 13 (1) (2022)
Peter J Walker, Stuart G Siddell, Elliot J Lefkowitz, Arcady R Mushegian, Evelien M Adriaenssens, Poliane Alfenas-Zerbini, Donald M Dempsey, Bas E Dutilh, María Laura García, R Curtis Hendrickson, Sandra Junglen, Mart Krupovic, J Thomas Beatty, Amy J Lambert, Małgorzata B Łobocka, Hanna M Oksanen, Richard J Orton, David L Robertson, Luisa Rubino, Sead Sabanadzovic, Peter Simmonds, Donald B Smith, Nobuhiro Suzuki, Koenraad Van Doorslaer, Anne-Mieke Vandamme, Darren P Martin, Francisco Murilo Zerbini
Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022). Archives of virology 167 (11) (2022)
Martin T Jahn, Tim Lachnit, S M Markert, Christian Stigloher, Lucía Pita, M Ribes, Bas E Dutilh, Ute Hentschel
Lifestyle of sponge symbiont phages by host prediction and correlative microscopy. The ISME journal 15 (7) (2021)
Katherine Ryan Amato, Marie-Claire Arrieta, Meghan B Azad, Michael T Bailey, Josiane L Broussard, Carlijn E Bruggeling, Erika C Claud, Elizabeth K Costello, Emily R Davenport, Bas E Dutilh, Holly A Swain Ewald, Paul W Ewald, Erin C Hanlon, Wrenetha Julion, Ali Keshavarzian, Corinne F Maurice, Gregory E Miller, Geoffrey A Preidis, Laure Segurel, Burton H Singer, Sathish Subramanian, Liping Zhao, Christopher W Kuzawa
The human gut microbiome and health inequities. Proceedings of the National Academy of Sciences of the United States of America 118 (25) (2021)
Winfried Goettsch, Niko Beerenwinkel, Li Deng, Lars Dölken, Bas E Dutilh, Florian Erhard, Lars Kaderali, Max von Kleist, Roland Marquet, Jelle Matthijnssens, Shawna McCallin, Dino P McMahon, Thomas Rattei, Ronald P Van Rij, David L Robertson, Martin Schwemmle, Noam Stern-Ginossar, Manja Marz
ITN-VIROINF: Understanding (Harmful) Virus-Host Interactions by Linking Virology and Bioinformatics. Viruses 13 (5) (2021)
Selma L van Esveld, Lisette Meerstein-Kessel, Cas Boshoven, Jochem F Baaij, Konstantin Barylyuk, Jordy P M Coolen, Joeri van Strien, Ronald A J Duim, Bas E Dutilh, Daniel R Garza, Marijn Letterie, Nicholas I Proellochs, Michelle N de Ridder, Prashanna Balaji Venkatasubramanian, Laura E de Vries, Ross Frederick Waller, Taco W A Kooij, Martijn A Huynen
A Prioritized and Validated Resource of Mitochondrial Proteins in Plasmodium Identifies Unique Biology. mSphere 6 (5) (2021)
Peter J Walker, Stuart G Siddell, Elliot J Lefkowitz, Arcady R Mushegian, Evelien M Adriaenssens, Poliane Alfenas-Zerbini, Andrew J Davison, Donald M Dempsey, Bas E Dutilh, María Laura García, Balázs Harrach, Robert L Harrison, R Curtis Hendrickson, Sandra Junglen, Nick J Knowles, Mart Krupovic, J Thomas Beatty, Amy J Lambert, Małgorzata B Łobocka, Max L Nibert, Hanna M Oksanen, Richard J Orton, David L Robertson, Luisa Rubino, Sead Sabanadzovic, Peter Simmonds, Donald B Smith, Nobuhiro Suzuki, Koenraad Van Doorslaer, Anne-Mieke Vandamme, Darren P Martin, Francisco Murilo Zerbini
Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021). Archives of virology 166 (9) (2021)
Michael Sheinman, Ksenia Arkhipova, Peter F Arndt, Bas E Dutilh, Rutger Hermsen, Florian Massip
Identical sequences found in distant genomes reveal frequent horizontal transfer across the bacterial domain. eLife 10 (2021)
Nikolaos Pappas, Bas E Dutilh
Finding functional associations between prokaryotic virus orthologous groups: a proof of concept. BMC bioinformatics 22 (1) (2021)
Marleen Balvert, Xiao Luo, Ernestina Hauptfeld, Alexander Schönhuth, Bas E Dutilh
OGRE: Overlap Graph-based metagenomic Read clustEring. Bioinformatics (Oxford, England) 37 (7) (2021)
Mart Krupovic, Dann Turner, Vera V Morozova, Michael Dyall-Smith, Hanna M Oksanen, Robert A Edwards, Bas E Dutilh, Susan M Lehman, Alejandro Reyes, Diana P Baquero, Matthew B Sullivan, Jumpei Uchiyama, Jesca Lukanga Nakavuma, Jakub Barylski, Mark J Young, Shi-Shen Du, Poliane Alfenas-Zerbini, Alla I Kushkina, Andrew M Kropinski, D İpek Kurtbӧke, J Rodney Brister, Cédric Lood, B L Sarkar, Yi-Gang Tong, Ying Liu, Li Huang, Johannes Wittmann, Nina Chanishvili, Leonardo Joaquim van Zyl, Janis Rumnieks, Tomohiro Mochizuki, Matti Jalasvuori, Ramy Karam Aziz, Małgorzata B Łobocka, Kenneth M Stedman, Andrey N Shkoporov, Annika Gillis, Peng Xu, François Enault, Petar Knezevic, Rob Lavigne, Sung-Keun Rhee, Virginija Cvirkaite-Krupovic, Cristina Moraru, Andrea I Moreno Switt, Minna M Poranen, Andrew D Millard, David Prangishvili, Evelien M Adriaenssens
Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021. Archives of virology 166 (11) (2021)
Evelien M Adriaenssens, Matthew B Sullivan, Petar Knezevic, Leonardo Joaquim van Zyl, B L Sarkar, Bas E Dutilh, Poliane Alfenas-Zerbini, Małgorzata B Łobocka, Yi-Gang Tong, James Rodney Brister, Andrea I Moreno Switt, Jochen Klumpp, Ramy Karam Aziz, Jakub Barylski, Jumpei Uchiyama, Robert A Edwards, Andrew M Kropinski, Nicola K Petty, Martha R C Clokie, Alla I Kushkina, Vera V Morozova, Siobain Duffy, Annika Gillis, Janis Rumnieks, D İpek Kurtbӧke, Guliko Natroshvili, Lawrence Goodridge, Johannes Wittmann, Rob Lavigne, Ho Bin Jang, David Prangishvili, François Enault, Dann Turner, Alejandro Reyes Muñoz, Hanna M Oksanen, Mart Krupovic
Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee. Archives of virology 165 (5) (2020)
Patrick A de Jonge, Dieuwke J C Smit Sibinga, Oliver A Boright, Ana Rita Costa, Franklin L Nobrega, Stan J J Brouns, Bas E Dutilh
Development of Styrene Maleic Acid Lipid Particles as a Tool for Studies of Phage-Host Interactions. Journal of virology 94 (23) (2020)
Alessandro Rossi, Laura Treu, Stefano Toppo, Henrike Zschach, Stefano Campanaro, Bas E Dutilh
Evolutionary Study of the Crassphage Virus at Gene Level. Viruses 12 (9) (2020)
Stuart G Siddell, Peter J Walker, Elliot J Lefkowitz, Arcady R Mushegian, Bas E Dutilh, Balázs Harrach, Robert L Harrison, Sandra Junglen, Nick J Knowles, Andrew M Kropinski, Mart Krupovic, J Thomas Beatty, Max L Nibert, Luisa Rubino, Sead Sabanadzovic, Peter Simmonds, Darren P Martin, Francisco Murilo Zerbini, Andrew J Davison
Binomial nomenclature for virus species: a consultation. Archives of virology 165 (2) (2020)
Laura Villanueva, F A Bastiaan von Meijenfeldt, Alexander Bauer Westbye, Subhash Yadav, Ellen C Hopmans, Bas E Dutilh, Jaap S Sinninghe Damsté
Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids. The ISME journal 15 (1) (2020)
Peter J Walker, Stuart G Siddell, Elliot J Lefkowitz, Arcady R Mushegian, Evelien M Adriaenssens, Donald M Dempsey, Bas E Dutilh, Balázs Harrach, Robert L Harrison, R Curtis Hendrickson, Sandra Junglen, Nick J Knowles, Andrew M Kropinski, Mart Krupovic, J Thomas Beatty, Max L Nibert, Richard J Orton, Luisa Rubino, Sead Sabanadzovic, Peter Simmonds, Donald B Smith, Darren P Martin, Francisco Murilo Zerbini, Andrew J Davison
Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020). Archives of virology 165 (11) (2020)
Peter J Walker, Stuart G Siddell, Elliot J Lefkowitz, Arcady R Mushegian, Donald M Dempsey, Bas E Dutilh, Balázs Harrach, Robert L Harrison, R Curtis Hendrickson, Sandra Junglen, Nick J Knowles, Andrew M Kropinski, Mart Krupovic, J Thomas Beatty, Max L Nibert, Luisa Rubino, Sead Sabanadzovic, Peter Simmonds, Darren P Martin, Francisco Murilo Zerbini, Andrew J Davison
Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019). Archives of virology 164 (9) (2019)
Robert A Edwards, Alejandro A Vega, Holly M Norman, Maria Ohaeri, Kyle Levi, Elizabeth A Dinsdale, Ondrej Cinek, Ramy Karam Aziz, Katelyn McNair, Jeremy J Barr, Kyle J Bibby, Stan J J Brouns, Adrian Cazares, Patrick A de Jonge, Christelle Desnues, Samuel L Díaz Muñoz, Peter C Fineran, Alexander Kurilshikov, Rob Lavigne, Karla Mazankova, David T McCarthy, Franklin L Nobrega, Alejandro Reyes, German Tapia, Nicole Trefault, Alexander V Tyakht, Pablo Vinuesa, Jeroen Wagemans, Alexandra Zhernakova, Frank Møller Aarestrup, Gunduz Ahmadov, Abeer Alassaf, Josefa Anton, Abigail E Asangba, Emma K Billings, Vito Adrian Cantu, Jane M Carlton, Daniel Cazares, Gyu-Sung Cho, Tess Condeff, Pilar Cortés, Mike Cranfield, Daniel A Cuevas, Rodrigo De la Iglesia, Przemyslaw Decewicz, Michael P Doane, Nathaniel J Dominy, Lukasz Dziewit, Bashir Mukhtar Elwasila, A Murat Eren, Charles Franz, Jingyuan Fu, Cristina Garcia-Aljaro, Elodie Ghedin, Kristen M Gulino, John M Haggerty, Steven R Head, Rene S Hendriksen, Colin Hill, Heikki Hyöty, Elena N Ilina, Mitchell T Irwin, Thomas C Jeffries, Juan Jofre, Randall E Junge, Scott T Kelley, Mohammadali Khan Mirzaei, Martin Kowalewski, Deepak Kumaresan, Steven R Leigh, David Lipson, Eugenia S Lisitsyna, Montserrat Llagostera, Julia M Maritz, Linsey C Marr, Angela McCann, Shahar Molshanski-Mor, Silvia Monteiro, Benjamin Moreira-Grez, Megan Morris, Lawrence Mugisha, Maite Muniesa, Horst Neve, Nam-Phuong Nguyen, Olivia D Nigro, Anders S Nilsson, Taylor O'Connell, Rasha Odeh, Andrew Oliver, Mariana Piuri, Aaron J Prussin Ii, Udi Qimron, Zhe-Xue Quan, Petra Rainetova, Adán Ramírez-Rojas, Raul Raya, Kim Reasor, Gillian A O Rice, Alessandro Rossi, Ricardo J Santos, John Shimashita, Elyse N Stachler, Lars C Stene, Ronan Strain, Rebecca Stumpf, Pedro J Torres, Alan Twaddle, MaryAnn Ugochi Ibekwe, Nicolás Villagra, Stephen Wandro, Bryan White, Andy Whiteley, Katrine L Whiteson, Cisca Wijmenga, Maria M Zambrano, Henrike Zschach, Bas E Dutilh
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage. Nature microbiology 4 (10) (2019)
Franklin L Nobrega, Marnix Vlot, Patrick A de Jonge, Lisa L Dreesens, Hubertus J E Beaumont, Rob Lavigne, Bas E Dutilh, Stan J J Brouns
Targeting mechanisms of tailed bacteriophages. Nature reviews. Microbiology 16 (12) (2019)
F H Coutinho, C B Silveira, G B Gregoracci, C C Thompson, R A Edwards, C P D Brussaard, Bas E Dutilh, F L Thompson
Reply to: Caution in inferring viral strategies from abundance correlations in marine metagenomes. Nature communications 10 (1) (2019)
Stuart G Siddell, Peter J Walker, Elliot J Lefkowitz, Arcady R Mushegian, Michael J Adams, Bas E Dutilh, Alexander E Gorbalenya, Balázs Harrach, Robert L Harrison, Sandra Junglen, Nick J Knowles, Andrew M Kropinski, Mart Krupovic, J Thomas Beatty, Max L Nibert, Luisa Rubino, Sead Sabanadzovic, Hélène Sanfaçon, Peter Simmonds, Darren P Martin, Francisco Murilo Zerbini, Andrew J Davison
Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018). Archives of virology 164 (3) (2019)
Simon Roux, Evelien M Adriaenssens, Bas E Dutilh, Eugene V Koonin, Andrew M Kropinski, Mart Krupovic, Jens H Kuhn, Rob Lavigne, J Rodney Brister, Darren P Martin, Clara Amid, Ramy K Aziz, Seth R Bordenstein, Peer Bork, Mya Breitbart, Guy R Cochrane, Rebecca A Daly, Christelle Desnues, Melissa B Duhaime, Joanne B Emerson, François Enault, Jed A Fuhrman, Pascal Hingamp, Philip Hugenholtz, Bonnie L Hurwitz, Natalia N Ivanova, Jessica M Labonté, Kyung-Bum Lee, Rex R Malmstrom, Manuel Martinez-Garcia, Ilene Karsch Mizrachi, Hiroyuki Ogata, A David Páez-Espino, Marie-Agnès Petit, Catherine Putonti, Thomas Rattei, Alejandro Reyes, Francisco Rodriguez-Valera, Karyna Rosario, Lynn Schriml, Frederik Schulz, Grieg F Steward, Matthew B Sullivan, Shinichi Sunagawa, Curtis A Suttle, Ben Temperton, Susannah G Tringe, Rebecca Vega Thurber, Nicole Suzanne Webster, Katrine L Whiteson, Steven W Wilhelm, K Eric Wommack, Tanja Woyke, Kelly C Wrighton, Pelin Yilmaz, Takashi Yoshida, Mark J Young, Natalya Yutin, Lisa Zeigler Allen, Nikos C Kyrpides, Emiley A Eloe-Fadrosh
Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature biotechnology 37 (1) (2018)
Andrew M Q King, Elliot J Lefkowitz, Arcady R Mushegian, Michael J Adams, Bas E Dutilh, Alexander E Gorbalenya, Balázs Harrach, Robert L Harrison, Sandra Junglen, Nick J Knowles, Andrew M Kropinski, Mart Krupovic, J Thomas Beatty, Max L Nibert, Luisa Rubino, Sead Sabanadzovic, Hélène Sanfaçon, Stuart G Siddell, Peter Simmonds, Darren P Martin, Francisco Murilo Zerbini, Andrew J Davison
Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018). Archives of virology 163 (9) (2018)
Evelien M Adriaenssens, Johannes Wittmann, J Thomas Beatty, Dann Turner, Matthew B Sullivan, Bas E Dutilh, Ho Bin Jang, Leonardo Joaquim van Zyl, Jochen Klumpp, Małgorzata B Łobocka, Andrea I Moreno Switt, Janis Rumnieks, Robert A Edwards, Jumpei Uchiyama, Poliane Alfenas-Zerbini, Nicola K Petty, Andrew M Kropinski, Jakub Barylski, Annika Gillis, Martha R C Clokie, David Prangishvili, Rob Lavigne, Ramy Karam Aziz, Siobain Duffy, Mart Krupovic, Alejandro Reyes Muñoz, Petar Knezevic, François Enault, Yi-Gang Tong, Hanna M Oksanen, J Rodney Brister
Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee. Archives of virology 163 (4) (2018)
Rineke Steenbergen, Martin Oti, Rob Ter Horst, Wilson Tat, Chris Neufeldt, Alexandr Belovodskiy, Tiing Tiing Chua, Woo Jung Cho, Michael Joyce, Bas E Dutilh, D Lorne Tyrrell
Establishing normal metabolism and differentiation in hepatocellular carcinoma cells by culturing in adult human serum. Scientific reports 8 (1) (2018)
Daniel R Garza, Marcel C van Verk, Martijn A Huynen, Bas E Dutilh
Towards predicting the environmental metabolome from metagenomics with a mechanistic model. Nature microbiology 3 (4) (2018)
Ksenia Arkhipova, Timofey Skvortsov, John P Quinn, John W McGrath, Christopher Cr Allen, Bas E Dutilh, Yvonne McElarney, Leonid A Kulakov
Temporal dynamics of uncultured viruses: a new dimension in viral diversity. The ISME journal 12 (1) (2017)
Felipe H Coutinho, Cynthia B Silveira, Gustavo B Gregoracci, Cristiane C Thompson, Robert A Edwards, Corina P D Brussaard, Bas E Dutilh, Fabiano L Thompson
Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans. Nature communications 8 (2017)
Evelien M Adriaenssens, Mart Krupovic, Petar Knezevic, Hans-Wolfgang Ackermann, Jakub Barylski, J Rodney Brister, Martha R C Clokie, Siobain Duffy, Bas E Dutilh, Robert A Edwards, Francois Enault, Ho Bin Jang, Jochen Klumpp, Andrew M Kropinski, Rob Lavigne, Minna M Poranen, David Prangishvili, Janis Rumnieks, Matthew B Sullivan, Johannes Wittmann, Hanna M Oksanen, Annika Gillis, J Thomas Beatty
Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee. Archives of virology 162 (4) (2016)
Daan R Speth, Michiel H In 't Zandt, Simon Guerrero-Cruz, Bas E Dutilh, Mike S M Jetten
Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment system. Nature communications 7 (2016)
Mart Krupovic, Bas E Dutilh, Evelien M Adriaenssens, Johannes Wittmann, Finn K Vogensen, Mathew B Sullivan, Janis Rumnieks, David Prangishvili, Rob Lavigne, Andrew M Kropinski, Jochen Klumpp, Annika Gillis, Francois Enault, Rob A Edwards, Siobain Duffy, Martha R C Clokie, Jakub Barylski, Hans-Wolfgang Ackermann, J Thomas Beatty
Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee. Archives of virology 161 (4) (2016)