Bradley E Bernstein

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 27

Top Topics

Transcription Factor

Neuroendocrine Tumors

Top Venues

Nature communications

Nature biotechnology

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Youngsook Lucy Jung, Wenping Zhao, Ian M H Li, Dhawal Jain, Charles B Epstein, Bradley E Bernstein, Sareh Parangi, Richard I Sherwood, Cassianne Robinson-Cohen, Yi-Hsiang Hsu, Peter J Park, Michael Mannstadt
Epigenetic profiling reveals key genes and cis-regulatory networks specific to human parathyroids. Nature communications 15 (1) (2024)
Youngsook Lucy Jung, Wenping Zhao, Ian M H Li, Dhawal Jain, Charles B Epstein, Bradley E Bernstein, Sareh Parangi, Richard I Sherwood, Cassianne Robinson-Cohen, Yi-Hsiang Hsu, Peter J Park, Michael Mannstadt
Epigenetic profiling reveals key genes and cis-regulatory networks specific to human parathyroids. Nature communications 15 (1) (2024)
Youngsook Lucy Jung, Wenping Zhao, Ian M H Li, Dhawal Jain, Charles B Epstein, Bradley E Bernstein, Sareh Parangi, Richard I Sherwood, Cassianne Robinson-Cohen, Yi-Hsiang Hsu, Peter J Park, Michael Mannstadt
Epigenetic profiling reveals key genes and cis-regulatory networks specific to human parathyroids. Nature communications 15 (1) (2024)
Tomokazu S Sumida, Matthew R Lincoln, Liang He, Yongjin P Park, Mineto Ota, Akiko Oguchi, Raku Son, Alice Yi, Helen A Stillwell, Greta A Leissa, Keishi Fujio, Yasuhiro Murakawa, Alexander M Kulminski, Charles B Epstein, Bradley E Bernstein, Manolis Kellis, David A Hafler
An autoimmune transcriptional circuit drives FOXP3 + regulatory T cell dysfunction. Science translational medicine 16 (762) (2024)
Tomokazu S Sumida, Matthew R Lincoln, Liang He, Yongjin P Park, Mineto Ota, Akiko Oguchi, Raku Son, Alice Yi, Helen A Stillwell, Greta A Leissa, Keishi Fujio, Yasuhiro Murakawa, Alexander M Kulminski, Charles B Epstein, Bradley E Bernstein, Manolis Kellis, David A Hafler
An autoimmune transcriptional circuit drives FOXP3 + regulatory T cell dysfunction. Science translational medicine 16 (762) (2024)
Youngsook Lucy Jung, Wenping Zhao, Ian M H Li, Dhawal Jain, Charles B Epstein, Bradley E Bernstein, Sareh Parangi, Richard I Sherwood, Cassianne Robinson-Cohen, Yi-Hsiang Hsu, Peter J Park, Michael Mannstadt
Epigenetic profiling reveals key genes and cis-regulatory networks specific to human parathyroids. Nature communications 15 (1) (2024)
Fadi J Najm, Peter C DeWeirdt, Molly M Moore, Samantha M Bevill, Chadi A El Farran, Kevin A Macias, Mudra Hegde, Amanda L Waterbury, Brian B Liau, Peter van Galen, John G Doench, Bradley E Bernstein
Chromatin complex dependencies reveal targeting opportunities in leukemia. Nature communications 14 (1) (2023)
Fadi J Najm, Peter C DeWeirdt, Molly M Moore, Samantha M Bevill, Chadi A El Farran, Kevin A Macias, Mudra Hegde, Amanda L Waterbury, Brian B Liau, Peter van Galen, John G Doench, Bradley E Bernstein
Chromatin complex dependencies reveal targeting opportunities in leukemia. Nature communications 14 (1) (2023)
Fadi J Najm, Peter C DeWeirdt, Molly M Moore, Samantha M Bevill, Chadi A El Farran, Kevin A Macias, Mudra Hegde, Amanda L Waterbury, Brian B Liau, Peter van Galen, John G Doench, Bradley E Bernstein
Chromatin complex dependencies reveal targeting opportunities in leukemia. Nature communications 14 (1) (2023)
Fadi J Najm, Peter C DeWeirdt, Molly M Moore, Samantha M Bevill, Chadi A El Farran, Kevin A Macias, Mudra Hegde, Amanda L Waterbury, Brian B Liau, Peter van Galen, John G Doench, Bradley E Bernstein
Chromatin complex dependencies reveal targeting opportunities in leukemia. Nature communications 14 (1) (2023)
Fadi J Najm, Peter C DeWeirdt, Molly M Moore, Samantha M Bevill, Chadi A El Farran, Kevin A Macias, Mudra Hegde, Amanda L Waterbury, Brian B Liau, Peter van Galen, John G Doench, Bradley E Bernstein
Chromatin complex dependencies reveal targeting opportunities in leukemia. Nature communications 14 (1) (2023)
Fadi J Najm, Peter C DeWeirdt, Molly M Moore, Samantha M Bevill, Chadi A El Farran, Kevin A Macias, Mudra Hegde, Amanda L Waterbury, Brian B Liau, Peter van Galen, John G Doench, Bradley E Bernstein
Chromatin complex dependencies reveal targeting opportunities in leukemia. Nature communications 14 (1) (2023)
Sofia Battaglia, Kevin Dong, Jingyi Wu, Zeyu Chen, Fadi J Najm, Yuanyuan Zhang, Molly M Moore, Vivian Hecht, Noam Shoresh, Bradley E Bernstein
Long-range phasing of dynamic, tissue-specific and allele-specific regulatory elements. Nature genetics 54 (10) (2022)
Tyler E Miller, Caleb A Lareau, Julia A Verga, Erica A K DePasquale, Vincent Liu, Daniel Ssozi, Katalin D Sandor, Yajie Yin, Leif S Ludwig, Chadi A El Farran, Duncan M Morgan, Ansuman T Satpathy, Gabriel K Griffin, Andrew A Lane, John Christopher Love, Bradley E Bernstein, Vijay G Sankaran, Peter van Galen
Mitochondrial variant enrichment from high-throughput single-cell RNA sequencing resolves clonal populations. Nature biotechnology 40 (7) (2022)
Sarah J Shareef, Samantha M Bevill, Ayush T Raman, Martin J Aryee, Peter van Galen, Volker Hovestadt, Bradley E Bernstein
Extended-representation bisulfite sequencing of gene regulatory elements in multiplexed samples and single cells. Nature biotechnology 39 (9) (2021)
Gabriel K Griffin, Jingyi Wu, Arvin Iracheta-Vellve, James C Patti, Jeffrey Hsu, Thomas Davis, Deborah Dele-Oni, Peter P Du, Aya G Halawi, Jeffrey J Ishizuka, Sarah Y Kim, Susan Klaeger, Nelson H Knudsen, Brian C Miller, Tung H Nguyen, Kira E Olander, Malvina Papanastasiou, Suzanna Rachimi, Emily J Robitschek, Emily M Schneider, Mitchell D Yeary, Margaret D Zimmer, Jacob D Jaffe, Steven A Carr, John G Doench, W Nicholas Haining, Kathleen B Yates, Robert T Manguso, Bradley E Bernstein
Epigenetic silencing by SETDB1 suppresses tumour intrinsic immunogenicity. Nature 595 (7866) (2021)
Lucia Cabal-Hierro, Peter van Galen, Miguel A Prado, Kelly J Higby, Katsuhiro Togami, Cody T Mowery, Joao A Paulo, Yingtian Xie, Paloma Cejas, Takashi Furusawa, Michael Bustin, Henry W Long, David B Sykes, Steven P Gygi, Daniel Finley, Bradley E Bernstein, Andrew A Lane
Chromatin accessibility promotes hematopoietic and leukemia stem cell activity. Nature communications 11 (1) (2020)
Jeffrey D Whitman, Joseph Hiatt, Cody T Mowery, Brian R Shy, Ruby Yu, Tori N Yamamoto, Ujjwal Rathore, Gregory M Goldgof, Caroline Whitty, Jonathan M Woo, Antonia E Gallman, Tyler E Miller, Andrew G Levine, David N Nguyen, Sagar P Bapat, Joanna Balcerek, Sophia Anna Bylsma, Ana M Lyons, Stacy Li, Allison Wai-Yi Wong, Eva Mae Gillis-Buck, Zachary B Steinhart, Youjin Lee, Ryan Apathy, Mitchell J Lipke, Jennifer Anne Smith, Tina Zheng, Ian C Boothby, Erin Isaza, Jackie Chan, Dante D Acenas, Jinwoo Lee, Trisha A Macrae, Than S Kyaw, David Wu, Dianna L Ng, Wei Gu, Vanessa A York, Haig Alexander Eskandarian, Perri C Callaway, Lakshmi Warrier, Mary E Moreno, Justine Levan, Leonel Torres, Lila A Farrington, Rita P Loudermilk, Kanishka Koshal, Kelsey C Zorn, Wilfredo F Garcia-Beltran, Diane Yang, Michael G Astudillo, Bradley E Bernstein, Jeffrey A Gelfand, Edward T Ryan, Richelle C Charles, A John Iafrate, Jochen K Lennerz, Steve Miller, Charles Y Chiu, Susan L Stramer, Michael R Wilson, Aashish Manglik, Chun Jimmie Ye, Nevan J Krogan, Mark S Anderson, Jason G Cyster, Joel D Ernst, Alan H B Wu, Kara L Lynch, Caryn Bern, Patrick D Hsu, Alexander Marson
Evaluation of SARS-CoV-2 serology assays reveals a range of test performance. Nature biotechnology 38 (10) (2020)
null null, Michael Paul Snyder, Thomas R Gingeras, Jill E Moore, Zhiping Weng, Mark B Gerstein, Bing Ren, Ross Cameron Hardison, John A Stamatoyannopoulos, Brenton R Graveley, Elise A Feingold, Michael J Pazin, Michael Pagan, Daniel A Gilchrist, Benjamin C Hitz, J Michael Cherry, Bradley E Bernstein, Eric M Mendenhall, Daniel R Zerbino, Adam Frankish, Paul Flicek, Richard M Myers
Perspectives on ENCODE. Nature 583 (7818) (2020)
null null, Jill E Moore, Michael J Purcaro, Henry E Pratt, Charles B Epstein, Noam Shoresh, Jessika Adrian, Trupti Kawli, Carrie A Davis, Alexander Dobin, Rajinder Kaul, Jessica Halow, Eric L Van Nostrand, Peter Freese, David U Gorkin, Yin Shen, Yupeng He, Mark Mackiewicz, Florencia Pauli-Behn, Brian A Williams, Ali Mortazavi, Cheryl A Keller, Xiao-Ou Zhang, Shaimae I Elhajjajy, Jack Huey, Diane E Dickel, Valentina Snetkova, Xintao Wei, Xiaofeng Wang, Juan Carlos Rivera-Mulia, Joel Rozowsky, Jing Zhang, Surya B Chhetri, Jialing Zhang, Alec Victorsen, Kevin P White, Axel Visel, Gene W Yeo, Christopher B Burge, Eric Lécuyer, David M Gilbert, Job Dekker, John L Rinn, Eric M Mendenhall, Joseph R Ecker, Manolis Kellis, Robert J Klein, William S Noble, Anshul Kundaje, Roderic Guigó, Peggy J Farnham, J Michael Cherry, Richard M Myers, Bing Ren, Brenton R Graveley, Mark B Gerstein, Len A Pennacchio, Michael Paul Snyder, Bradley E Bernstein, Barbara Wold, Ross Cameron Hardison, Thomas R Gingeras, John A Stamatoyannopoulos, Nishigandha Phalke
Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature 583 (7818) (2020)
Nauman Javed, Yossi Farjoun, Tim J Fennell, Charles B Epstein, Bradley E Bernstein, Noam Shoresh
Detecting sample swaps in diverse NGS data types using linkage disequilibrium. Nature communications 11 (1) (2020)
Justin Brumbaugh, Ik Soo Kim, Fei Ji, Aaron J Huebner, Bruno Di Stefano, Benjamin A Schwarz, Jocelyn Charlton, Amy Coffey, Jiho Choi, Ryan M Walsh, Jeffrey W Schindler, Anthony Anselmo, Alexander Meissner, Ruslan I Sadreyev, Bradley E Bernstein, Hanno Hock, Konrad Hochedlinger
Inducible histone K-to-M mutations are dynamic tools to probe the physiological role of site-specific histone methylation in vitro and in vivo. Nature cell biology 21 (11) (2019)
Paloma Cejas, Yotam Drier, Koen M A Dreijerink, Lodewijk A A Brosens, Vikram Deshpande, Charles B Epstein, Elfi B Conemans, Folkert H M Morsink, Mindy K Graham, Gerlof D Valk, Menno R Vriens, Carlos Fernandez-Del Castillo, Cristina R Ferrone, Tomer Adar, Michaela Bowden, Holly J Whitton, Annacarolina Da Silva, Alba Font-Tello, Henry W Long, Elizabeth Gaskell, Noam Shoresh, Christopher M Heaphy, Ewa Sicinska, Matthew H Kulke, Daniel C Chung, Bradley E Bernstein, Ramesh A Shivdasani
Enhancer signatures stratify and predict outcomes of non-functional pancreatic neuroendocrine tumors. Nature medicine 25 (8) (2019)
Daniel R Tarjan, William A Flavahan, Bradley E Bernstein
Epigenome editing strategies for the functional annotation of CTCF insulators. Nature communications 10 (1) (2019)
Mariella G Filbin, Michael Mints, Volker Hovestadt, McKenzie L Shaw, Leah E Escalante, Nathan D Mathewson, Cyril Neftel, Nelli Frank, Kristine Pelton, Christine M Hebert, Christine Haberler, Keren Yizhak, Johannes Gojo, Kristof Egervari, Christopher Mount, Peter van Galen, Dennis M Bonal, Quang-De Nguyen, Alexander Beck, Claire Sinai, Thomas Czech, Christian Dorfer, Liliana Goumnerova, Cinzia Lavarino, Angel Montero Carcaboso, Jaume Mora, Ravindra Mylvaganam, Christina C Luo, Andreas Peyrl, Mara Popović, Amedeo A Azizi, Tracy T Batchelor, Matthew P Frosch, Maria Martinez-Lage, Mark W Kieran, Pratiti Bandopadhayay, Rameen Beroukhim, Gerhard Fritsch, Gad A Getz, Orit Rozenblatt-Rosen, Kai W Wucherpfennig, David N Louis, Michelle Monje, Irene Slavc, Keith L Ligon, Todd R Golub, Aviv Regev, Bradley E Bernstein, Mario L Suvà
Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq. Science (New York, N.Y.) 360 (6386) (2018)
William A Flavahan, Elizabeth Gaskell, Bradley E Bernstein
Epigenetic plasticity and the hallmarks of cancer. Science (New York, N.Y.) 357 (6348) (2018)
Andrew S Venteicher, Michael Mints, Christine Hebert, Keren Yizhak, Cyril Neftel, Mariella G Filbin, Volker Hovestadt, Leah E Escalante, McKenzie L Shaw, Christopher Rodman, Shawn M Gillespie, Danielle Dionne, Christina C Luo, Hiranmayi Ravichandran, Ravindra Mylvaganam, Christopher Mount, Maristela L Onozato, Brian V Nahed, Hiroaki Wakimoto, William T Curry, A John Iafrate, Miguel N Rivera, Matthew P Frosch, Todd R Golub, Priscilla K Brastianos, Gad A Getz, Anoop P Patel, Michelle Monje, Daniel P Cahill, Orit Rozenblatt-Rosen, David N Louis, Bradley E Bernstein, Aviv Regev, Mario L Suvà
Decoupling genetics, lineages, and microenvironment in IDH-mutant gliomas by single-cell RNA-seq. Science (New York, N.Y.) 355 (6332) (2017)