Stefan Bonn (S Bonn)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 35

Top Venues

Nature communications

Genome biology

medRxiv : the preprint server for health sciences

Science immunology

Zentrum für Molekulare Neurobiologie

Max-Planck-Institute for Medical Research (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Zentrum für Molekulare Neurobiologie

Germany

Professor, Institute Director :: Medical Systems Biology

German Center for Neurodegenerative Diseases

Germany

Senior Scientist :: Genome Biology of Neurodegenerative Diseases

Deutsches Zentrum für Neurodegenerative Erkrankungen - Mar 31 2017

Germany

Independent Research Groupleader :: Computational Systemsbiology

European Molecular Biology Laboratory

Germany

Postdoctoral Researcher :: Genome Biology

Education History

Max-Planck-Institute for Medical Research

Germany

PHD :: Neuroscience

Publications

Fabian Westhaeusser, Patrick Fuhlert, Esther Dietrich, Maximilian Lennartz, Robin Khatri, Nico Kaiser, Pontus Röbeck, Roman David Bülow, Saskia von Stillfried, Anja Witte, Sam Ladjevardi, Anders Drotte, Peter Severgardh, Jan Baumbach, Victor G Puelles, Michael Häggman, Michael Brehler, Peter Boor, Peter Walhagen, Anca Dragomir, Christer Busch, Markus Graefen, Ewert Bengtsson, Guido Sauter, Marina Zimmermann, Stefan Bonn
Robust, credible, and interpretable AI-based histopathological prostate cancer grading. medRxiv : the preprint server for health sciences (2024)
Lucas Caldi Gomes, Sonja Hänzelmann, Fabian Hausmann, Robin Khatri, Sergio Oller, Mojan Parvaz, Laura Tzeplaeff, Laura Pasetto, Marie Gebelin, Melanie Ebbing, Constantin Holzapfel, Stefano Fabrizio Columbro, Serena Scozzari, Johanna Knöferle, Isabell Cordts, Antonia Franziska Demleitner, Marcus Deschauer, Claudia Dufke, Marc Sturm, Qihui Zhou, Pavol Zelina, Emma Sudria-Lopez, Tobias B Haack, Sebastian Streb, Magdalena Kuzma-Kozakiewicz, Dieter Edbauer, Ronald Jeroen Pasterkamp, Endre Laczko, Hubert Rehrauer, Ralph Schlapbach, Christine Carapito, Valentina Bonetto, Stefan Bonn, Paul Lingor
Multiomic ALS signatures highlight subclusters and sex differences suggesting the MAPK pathway as therapeutic target. Nature communications 15 (1) (2024)
Fabian Westhaeusser, Patrick Fuhlert, Esther Dietrich, Maximilian Lennartz, Robin Khatri, Nico Kaiser, Pontus Röbeck, Roman David Bülow, Saskia von Stillfried, Anja Witte, Sam Ladjevardi, Anders Drotte, Peter Severgardh, Jan Baumbach, Victor G Puelles, Michael Häggman, Michael Brehler, Peter Boor, Peter Walhagen, Anca Dragomir, Christer Busch, Markus Graefen, Ewert Bengtsson, Guido Sauter, Marina Zimmermann, Stefan Bonn
Robust, credible, and interpretable AI-based histopathological prostate cancer grading. medRxiv : the preprint server for health sciences (2024)
Robin Khatri, Pierre Machart, Stefan Bonn
DISSECT: deep semi-supervised consistency regularization for accurate cell type fraction and gene expression estimation. Genome biology 25 (1) (2024)
Robin Khatri, Pierre Machart, Stefan Bonn
DISSECT: deep semi-supervised consistency regularization for accurate cell type fraction and gene expression estimation. Genome biology 25 (1) (2024)
Leon U B Enk, Malte Hellmig, Kristoffer Riecken, Christoph Kilian, Paul Datlinger, Saskia L Jauch-Speer, Tobias Neben, Zeba Sultana, Amirrtavarshni Sivayoganathan, Alina Borchers, Hans-Joachim Paust, Yu Zhao, Nariaki Asada, Shuya Liu, Theodora Agalioti, Penelope Pelczar, Thorsten Wiech, Christoph Bock, Tobias B Huber, Samuel Huber, Stefan Bonn, Nicola Gagliani, Boris Fehse, Ulf Panzer, Christian F Krebs
Targeting T cell plasticity in kidney and gut inflammation by pooled single-cell CRISPR screening. Science immunology 9 (96) (2024)
Lucas Caldi Gomes, Sonja Hänzelmann, Fabian Hausmann, Robin Khatri, Sergio Oller, Mojan Parvaz, Laura Tzeplaeff, Laura Pasetto, Marie Gebelin, Melanie Ebbing, Constantin Holzapfel, Stefano Fabrizio Columbro, Serena Scozzari, Johanna Knöferle, Isabell Cordts, Antonia Franziska Demleitner, Marcus Deschauer, Claudia Dufke, Marc Sturm, Qihui Zhou, Pavol Zelina, Emma Sudria-Lopez, Tobias B Haack, Sebastian Streb, Magdalena Kuzma-Kozakiewicz, Dieter Edbauer, Ronald Jeroen Pasterkamp, Endre Laczko, Hubert Rehrauer, Ralph Schlapbach, Christine Carapito, Valentina Bonetto, Stefan Bonn, Paul Lingor
Multiomic ALS signatures highlight subclusters and sex differences suggesting the MAPK pathway as therapeutic target. Nature communications 15 (1) (2024)
Fabian Westhaeusser, Patrick Fuhlert, Esther Dietrich, Maximilian Lennartz, Robin Khatri, Nico Kaiser, Pontus Röbeck, Roman David Bülow, Saskia von Stillfried, Anja Witte, Sam Ladjevardi, Anders Drotte, Peter Severgardh, Jan Baumbach, Victor G Puelles, Michael Häggman, Michael Brehler, Peter Boor, Peter Walhagen, Anca Dragomir, Christer Busch, Markus Graefen, Ewert Bengtsson, Guido Sauter, Marina Zimmermann, Stefan Bonn
Robust, credible, and interpretable AI-based histopathological prostate cancer grading. medRxiv : the preprint server for health sciences (2024)
Robin Khatri, Pierre Machart, Stefan Bonn
DISSECT: deep semi-supervised consistency regularization for accurate cell type fraction and gene expression estimation. Genome biology 25 (1) (2024)
Lucas Caldi Gomes, Sonja Hänzelmann, Fabian Hausmann, Robin Khatri, Sergio Oller, Mojan Parvaz, Laura Tzeplaeff, Laura Pasetto, Marie Gebelin, Melanie Ebbing, Constantin Holzapfel, Stefano Fabrizio Columbro, Serena Scozzari, Johanna Knöferle, Isabell Cordts, Antonia Franziska Demleitner, Marcus Deschauer, Claudia Dufke, Marc Sturm, Qihui Zhou, Pavol Zelina, Emma Sudria-Lopez, Tobias B Haack, Sebastian Streb, Magdalena Kuzma-Kozakiewicz, Dieter Edbauer, Ronald Jeroen Pasterkamp, Endre Laczko, Hubert Rehrauer, Ralph Schlapbach, Christine Carapito, Valentina Bonetto, Stefan Bonn, Paul Lingor
Multiomic ALS signatures highlight subclusters and sex differences suggesting the MAPK pathway as therapeutic target. Nature communications 15 (1) (2024)
Robin Khatri, Pierre Machart, Stefan Bonn
DISSECT: deep semi-supervised consistency regularization for accurate cell type fraction and gene expression estimation. Genome biology 25 (1) (2024)
Fabian Hausmann, Can Ergen, Robin Khatri, Mohamed Marouf, Sonja Hänzelmann, Nicola Gagliani, Samuel Huber, Pierre Machart, Stefan Bonn
DISCERN: deep single-cell expression reconstruction for improved cell clustering and cell subtype and state detection. Genome biology 24 (1) (2023)
Dominik Kylies, Marina Zimmermann, Fabian Haas, Maria Schwerk, Malte Kuehl, Michael Brehler, Jan Czogalla, Lola C Hernandez C, Leonie Konczalla, Yusuke Okabayashi, Julia Menzel, Ilka Edenhofer, Sam Mezher, Hande Aypek, Bernhard Dumoulin, Hui Wu, Smilla Hofmann, Oliver Kretz, Nicola Wanner, Nicola M Tomas, Susanne Krasemann, Markus Glatzel, Christoph Kuppe, Rafael Kramann, Bella Banjanin, Rebekka K Schneider, Christopher Urbschat, Petra Clara Arck, Nicola Gagliani, Marc van Zandvoort, Thorsten Wiech, Florian Grahammer, Pablo J Sáez, Milagros N Wong, Stefan Bonn, Tobias B Huber, Victor G Puelles
Expansion-enhanced super-resolution radial fluctuations enable nanoscale molecular profiling of pathology specimens. Nature nanotechnology (2023)
Hans-Joachim Paust, Ning Song, Donatella De Feo, Nariaki Asada, Selma Tuzlak, Yu Zhao, Jan-Hendrik Riedel, Malte Hellmig, Amirrtavarshni Sivayoganathan, Anett Peters, Anna Kaffke, Alina Borchers, Ulrich O Wenzel, Oliver M Steinmetz, Gisa Tiegs, Elisabeth Meister, Matthias Mack, Christian Kurts, Sibylle von Vietinghoff, Maja T Lindenmeyer, Elion Hoxha, Rolf A K Stahl, Tobias B Huber, Stefan Bonn, Catherine Meyer-Schwesinger, Thorsten Wiech, Jan-Eric Turner, Burkhard Becher, Christian F Krebs, Ulf Panzer
CD4 + T cells produce GM-CSF and drive immune-mediated glomerular disease by licensing monocyte-derived cells to produce MMP12. Science translational medicine 15 (687) (2023)
Kevin Menden, Margherita Francescatto, Tenzin Nyima, Cornelis Blauwendraat, Ashutosh Dhingra, Melissa Castillo-Lizardo, Noémia Fernandes, Lalit Kaurani, Deborah Kronenberg-Versteeg, Burcu Atasu, Eldem Sadikoglou, Barbara Borroni, Salvador Rodriguez-Nieto, Javier Simon-Sanchez, Andre Fischer, David Wesley Craig, Manuela Neumann, Stefan Bonn, Patrizia Rizzu, Peter Heutink
A multi-omics dataset for the analysis of frontotemporal dementia genetic subtypes. Scientific data 10 (1) (2023)
Hans-Joachim Paust, Ning Song, Donatella De Feo, Nariaki Asada, Selma Tuzlak, Yu Zhao, Jan-Hendrik Riedel, Malte Hellmig, Amirrtavarshni Sivayoganathan, Anett Peters, Anna Kaffke, Alina Borchers, Ulrich O Wenzel, Oliver M Steinmetz, Gisa Tiegs, Elisabeth Meister, Matthias Mack, Christian Kurts, Sibylle von Vietinghoff, Maja T Lindenmeyer, Elion Hoxha, Rolf A K Stahl, Tobias B Huber, Stefan Bonn, Catherine Meyer-Schwesinger, Thorsten Wiech, Jan-Eric Turner, Burkhard Becher, Christian F Krebs, Ulf Panzer
CD4 + T cells produce GM-CSF and drive immune-mediated glomerular disease by licensing monocyte-derived cells to produce MMP12. Science translational medicine 15 (687) (2023)
Richard Drexler, Thomas Sauvigny, Ulrich Schüller, Alicia Eckhardt, Cecile L Maire, Robin Khatri, Fabian Hausmann, Sonja Hänzelmann, Tobias B Huber, Stefan Bonn, Helena Bode, Katrin Lamszus, Manfred Westphal, Lasse Dührsen, Franz L Ricklefs
Epigenetic profiling reveals a strong association between lack of 5-ALA fluorescence and EGFR amplification in IDH -wildtype glioblastoma. Neuro-oncology practice 10 (5) (2023)
Steven Schepanski, Mattia Chini, Veronika Sternemann, Christopher Urbschat, Kristin Thiele, Ting Sun, Yu Zhao, Mareike Poburski, Anna Woestemeier, Marie-Theres Thieme, Dimitra E Zazara, Malik Alawi, Nicole Fischer, Joerg Heeren, Nikita Vladimirov, Andrew Woehler, Victor G Puelles, Stefan Bonn, Nicola Gagliani, Ileana L Hanganu-Opatz, Petra Clara Arck
Pregnancy-induced maternal microchimerism shapes neurodevelopment and behavior in mice. Nature communications 13 (1) (2022)
Hannes Wartmann, Sven Heins, Karin Kloiber, Stefan Bonn
Bias-invariant RNA-sequencing metadata annotation. GigaScience 10 (9) (2022)
Yu Zhao, Christoph Kilian, Jan-Eric Turner, Lidia Bosurgi, Kevin Roedl, Patricia Bartsch, Ann-Christin Gnirck, Filippo Cortesi, Christoph Schultheiß, Malte Hellmig, Leon U B Enk, Fabian Hausmann, Alina Borchers, Milagros N Wong, Hans-Joachim Paust, Francesco Siracusa, Nicola Scheibel, Marissa Herrmann, Elisa Rosati, Petra Bacher, Dominik Kylies, Dominik Jarczak, Marc Lütgehetmann, Susanne Pfefferle, Stefan Steurer, Julian Schulze Zur-Wiesch, Victor G Puelles, Jan-Peter Sperhake, Marylyn Martina Addo, Ansgar W Lohse, Mascha Binder, Samuel Huber, Tobias B Huber, Stefan Kluge, Stefan Bonn, Ulf Panzer, Nicola Gagliani, Christian F Krebs
Clonal expansion and activation of tissue-resident memory-like Th17 cells expressing GM-CSF in the lungs of severe COVID-19 patients. Science immunology 6 (56) (2021)
Christian F Krebs, Daniel Reimers, Yu Zhao, Hans-Joachim Paust, Patricia Bartsch, Sarah Nuñez, Mariana V Rosemblatt, Malte Hellmig, Christoph Kilian, Alina Borchers, Leon U B Enk, Michael Zinke, Martina Becker, Joanna Schmid, Stefanie Klinge, Milagros N Wong, Victor G Puelles, Constantin Schmidt, Tabea Bertram, Natascha E Stumpf, Elion Hoxha, Catherine Meyer-Schwesinger, Maja T Lindenmeyer, Clemens D Cohen, Michael Rink, Christian Kurts, Soeren Franzenburg, Friedrich Nolte, Jan-Eric Turner, Jan-Hendrik Riedel, Samuel Huber, Nicola Gagliani, Tobias B Huber, Thorsten Wiech, Holger Rohde, María Rosa Bono, Stefan Bonn, Ulf Panzer, Hans-Willi Mittrücker
Pathogen-induced tissue-resident memory TH17 (TRM17) cells amplify autoimmune kidney disease. Science immunology 5 (50) (2021)
Silvia Ripamonti, Orr Shomroni, Jeong Seop Rhee, Kamal Chowdhury, Olaf Jahn, Klaus Peter Hellmann, Stefan Bonn, Nils Brose, Marilyn Tirard
SUMOylation controls the neurodevelopmental function of the transcription factor Zbtb20. Journal of neurochemistry 154 (6) (2020)
Mohamed Marouf, Pierre Machart, Vikas Bansal, Christoph Kilian, Daniel S Magruder, Christian F Krebs, Stefan Bonn
Realistic in silico generation and augmentation of single-cell RNA-seq data using generative adversarial networks. Nature communications 11 (1) (2020)
Kevin Menden, Mohamed Marouf, Sergio Oller Moreno, Anupriya Dalmia, Daniel Sumner Magruder, Karin Kloiber, Peter Heutink, Stefan Bonn
Deep learning-based cell composition analysis from tissue expression profiles. Science advances 6 (30) (2020)
Sarva Keihani, Verena Kluever, S Mandad, Vikas Bansal, R Rahman, E Fritsch, Lucas Caldi Gomes, A Gärtner, S Kügler, H Urlaub, Jonathan D Wren, Stefan Bonn, S O Rizzoli, Eugenio F Fornasiero
The long noncoding RNA neuroLNC regulates presynaptic activity by interacting with the neurodegeneration-associated protein TDP-43. Science advances 5 (12) (2019)
Mohamed Samir, Ramon O Vidal, Fatma Abdallah, Vincenzo Capece, Frauke Seehusen, Robert Geffers, Ashraf Hussein, Ahmed A H Ali, Stefan Bonn, Frank Pessler
Organ-specific small non-coding RNA responses in domestic (Sudani) ducks experimentally infected with highly pathogenic avian influenza virus (H5N1). RNA biology 17 (1) (2019)
Eirini Kanata, Franc Llorens, Dimitra Dafou, Athanasios Dimitriadis, Katrin Thüne, Konstantinos Xanthopoulos, Nikolaos Bekas, Juan Carlos Espinosa, Matthias Schmitz, Alba Marín-Moreno, Vincenzo Capece, Orr Shormoni, Olivier Andréoletti, Stefan Bonn, Juan-Maria Torres, Isidro Ferrer, Inga Zerr, Theodoros Sklaviadis
RNA editing alterations define manifestation of prion diseases. Proceedings of the National Academy of Sciences of the United States of America 116 (39) (2019)
Eugenio F Fornasiero, Sunit Mandad, Hanna Wildhagen, Mihai Alevra, Burkhard Rammner, Sarva Keihani, Felipe Opazo, Inga Urban, Till Ischebeck, M Sadman Sakib, Maryam K Fard, Koray Kirli, Tonatiuh Pena Centeno, Ramon O Vidal, Raza-Ur Rahman, Eva Benito, André Fischer, Sven Dennerlein, Peter Rehling, Ivo Doe Feussner, Stefan Bonn, Mikael Simons, Henning Urlaub, Silvio O Rizzoli
Precisely measured protein lifetimes in the mouse brain reveal differences across tissues and subcellular fractions. Nature communications 9 (1) (2018)
Vikas Bansal, M Mitjans, C A P Burik, Richard Karlsson Linnér, Aysu Okbay, C A Rietveld, M Begemann, Stefan Bonn, S Ripke, Ronald de Vlaming, Michel G Nivard, H Ehrenreich, P D Koellinger
Genome-wide association study results for educational attainment aid in identifying genetic heterogeneity of schizophrenia. Nature communications 9 (1) (2018)
Kan Xie, Devon P Ryan, Brandon L Pearson, Kristin S Henzel, Frauke Neff, Ramon O Vidal, Magali Hennion, Isabelle Lehmann, Melvin Schleif, Susanne Schröder, Thure Adler, Birgit Rathkolb, Jan Rozman, Anna-Lena Schütz, Cornelia Prehn, Michel E Mickael, Marco Weiergräber, Jerzy Adamski, Dirk H Busch, Gerhard Ehninger, Anna Matynia, Walker S Jackson, Eckhard Wolf, Helmut Fuchs, Valerie Gailus-Durner, Stefan Bonn, Martin Hrabě de Angelis, Dan Ehninger
Epigenetic alterations in longevity regulators, reduced life span, and exacerbated aging-related pathology in old father offspring mice. Proceedings of the National Academy of Sciences of the United States of America 115 (10) (2018)
Franc Llorens, Katrin Thüne, Eulàlia Martí, Eirini Kanata, Dimitra Dafou, Daniela Díaz-Lucena, Ana Vivancos, Orr Shomroni, Saima Zafar, Matthias Schmitz, Uwe Michel, Natalia Fernández-Borges, Olivier Andréoletti, José Antonio Del Rio, Juana Díez, Andre Fischer, Stefan Bonn, Theodoros Sklaviadis, Juan-Maria Torres, Isidre Ferrer, Inga Zerr
Regional and subtype-dependent miRNA signatures in sporadic Creutzfeldt-Jakob disease are accompanied by alterations in miRNA silencing machinery and biogenesis. PLoS pathogens 14 (1) (2018)
Robert Fledrich, Tamer A Abdelaal, L Rasch, V Bansal, V Schütza, B Brügger, C Lüchtenborg, T Prukop, J Stenzel, R U Rahman, Doris Hermes, David Ewers, Wiebke Möbius, T Ruhwedel, Istvan Katona, J Weis, D Klein, R Martini, W Brück, W C Müller, Stefan Bonn, I Bechmann, K A Nave, Ruth M Stassart, M W Sereda
Targeting myelin lipid metabolism as a potential therapeutic strategy in a model of CMT1A neuropathy. Nature communications 9 (1) (2018)
Raza-Ur Rahman, Abhivyakti Gautam, Jörn Bethune, Abdul Sattar, Maksims Fiosins, Daniel Sumner Magruder, Vincenzo Capece, Orr Shomroni, Stefan Bonn
Oasis 2: improved online analysis of small RNA-seq data. BMC bioinformatics 19 (1) (2018)
Marina Mitjans, Jan Seidel, Martin Begemann, Fabian Bockhop, Jorge Moya-Higueras, Vikas Bansal, Janina Wesolowski, Anna Seelbach, Manuel Ignacio Ibáñez, Fatka Kovacevic, Oguzhan Duvar, Lourdes Fañanás, Hannah-Ulrike Wolf, Generós Ortet, Peter Zwanzger, Verena Klein, Ina Lange, Andreas Tänzer, Manuela Dudeck, Lars Penke, Ludger Tebartz van Elst, Robert A Bittner, Richard Schmidmeier, Roland Freese, Rüdiger Müller-Isberner, Jens Wiltfang, Thomas Bliesener, Stefan Bonn, Luise Poustka, Jürgen L Müller, Bárbara Arias, Hannelore Ehrenreich
Violent aggression predicted by multiple pre-adult environmental hits. Molecular psychiatry 24 (10) (2018)
Klas Hatje, Raza-Ur Rahman, Ramon O Vidal, Dominic Simm, Björn Hammesfahr, Vikas Bansal, Ashish Rajput, Michel Edwar Mickael, Ting Sun, Stefan Bonn, Martin Kollmar
The landscape of human mutually exclusive splicing. Molecular systems biology 13 (12) (2017)

Stefan Bonn.css-eqlu8i{font-size:small;padding-left:4px;} (S Bonn)

Publication Activity (10 Years)

Top Topics

Top Venues

Stefan Bonn (S Bonn)