Christopher A Maher

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 25

Top Topics

Dna Methylation

Metastatic Colorectal Cancer

Long Noncoding Rna

Top Venues

Nature communications

Nature cell biology

NPJ genomic medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Meng Zhang, Martin Sjostrom, Xiekui Cui, Adam Foye, Kyle Farh, Raunak Shrestha, Arian Lundberg, Ha X Dang, Haolong Li, Phillip G Febbo, Rahul Aggarwal, Joshi J Alumkal, Eric J Small, null null, Christopher A Maher, Felix Y Feng, David A Quigley
Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progression. Nature cell biology 26 (7) (2024)
Meng Zhang, Martin Sjostrom, Xiekui Cui, Adam Foye, Kyle Farh, Raunak Shrestha, Arian Lundberg, Ha X Dang, Haolong Li, Phillip G Febbo, Rahul Aggarwal, Joshi J Alumkal, Eric J Small, null null, Christopher A Maher, Felix Y Feng, David A Quigley
Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progression. Nature cell biology (2024)
Meng Zhang, Martin Sjostrom, Xiekui Cui, Adam Foye, Kyle Farh, Raunak Shrestha, Arian Lundberg, Ha X Dang, Haolong Li, Phillip G Febbo, Rahul Aggarwal, Joshi J Alumkal, Eric J Small, null null, Christopher A Maher, Felix Y Feng, David A Quigley
Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progression. Nature cell biology 26 (7) (2024)
Debanjan Saha, Ha X Dang, Meng Zhang, David A Quigley, Felix Y Feng, Christopher A Maher
Single cell-transcriptomic analysis informs the lncRNA landscape in metastatic castration resistant prostate cancer. NPJ genomic medicine 9 (1) (2024)
Meng Zhang, Martin Sjostrom, Xiekui Cui, Adam Foye, Kyle Farh, Raunak Shrestha, Arian Lundberg, Ha X Dang, Haolong Li, Phillip G Febbo, Rahul Aggarwal, Joshi J Alumkal, Eric J Small, null null, Christopher A Maher, Felix Y Feng, David A Quigley
Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progression. Nature cell biology 26 (7) (2024)
Debanjan Saha, Ha X Dang, Meng Zhang, David A Quigley, Felix Y Feng, Christopher A Maher
Single cell-transcriptomic analysis informs the lncRNA landscape in metastatic castration resistant prostate cancer. NPJ genomic medicine 9 (1) (2024)
Pradeep Singh Chauhan, Irfan Alahi, Savar Sinha, Elisa M Ledet, Ryan Mueller, Jessica Linford, Alexander L Shiang, Jace Webster, Lilli Greiner, Breanna Yang, Gabris Ni, Ha X Dang, Debanjan Saha, Ramandeep K Babbra, Wenjia Feng, Peter K Harris, Faridi Qaium, Dzifa Yawa Duose, Alexander Sanchez-Espitia, Alexander D Sherry, Ellen B Jaeger, Patrick J Miller, Sydney A Caputo, Jacob J Orme, Fabrice Lucien, Sean S Park, Chad Tang, Russell K Pachynski, A Oliver Sartor, Christopher A Maher, Aadel A Chaudhuri
Genomic and epigenomic analysis of plasma cell-free DNA identifies stemness features associated with worse survival in lethal prostate cancer. Clinical cancer research : an official journal of the American Association for Cancer Research (2024)
Pradeep Singh Chauhan, Irfan Alahi, Savar Sinha, Elisa M Ledet, Ryan Mueller, Jessica Linford, Alexander L Shiang, Jace Webster, Lilli Greiner, Breanna Yang, Gabris Ni, Ha X Dang, Debanjan Saha, Ramandeep K Babbra, Wenjia Feng, Peter K Harris, Faridi Qaium, Dzifa Yawa Duose, Alexander Sanchez-Espitia, Alexander D Sherry, Ellen B Jaeger, Patrick J Miller, Sydney A Caputo, Jacob J Orme, Fabrice Lucien, Sean S Park, Chad Tang, Russell K Pachynski, A Oliver Sartor, Christopher A Maher, Aadel A Chaudhuri
Genomic and epigenomic analysis of plasma cell-free DNA identifies stemness features associated with worse survival in lethal prostate cancer. Clinical cancer research : an official journal of the American Association for Cancer Research (2024)
Ha X Dang, Debanjan Saha, Reyka Jayasinghe, Sidi Zhao, Emily Coonrod, Jacqueline Mudd, S Peter Goedegebuure, Ryan Fields, Li Ding, Christopher A Maher
Single-cell transcriptomics reveals long noncoding RNAs associated with tumor biology and the microenvironment in pancreatic cancer. NAR cancer 5 (4) (2023)
Ghofran Othoum, Christopher A Maher
CrypticProteinDB: an integrated database of proteome and immunopeptidome derived non-canonical cancer proteins. NAR cancer 5 (2) (2023)
Emilee N Kotnik, Mary M Mullen, Nicholas C Spies, Tiandao Li, Matthew J Inkman, Jin Zhang, Fernanda Martins Rodrigues, Ian S Hagemann, Carolyn K McCourt, Premal H Thaker, Andrea R Hagemann, Matthew A Powell, David G Mutch, Dineo Khabele, Gregory D Longmore, Elaine R Mardis, Christopher A Maher, Christopher A Miller, Katherine C Fuh
Genetic characterization of primary and metastatic high-grade serous ovarian cancer tumors reveals distinct features associated with survival. Communications biology 6 (1) (2023)
Sidi Zhao, Amy Ly, Jacqueline L Mudd, Emily B Rozycki, Jace Webster, Emily Coonrod, Ghofran Othoum, Jingqin R Luo, Ha X Dang, Ryan C Fields, Christopher A Maher
Characterization of cell-type specific circular RNAs associated with colorectal cancer metastasis. NAR cancer 5 (2) (2023)
Kelsy C Cotto, Yang-Yang Feng, Avinash Ramu, Megan M Richters, Sharon L Freshour, Zachary L Skidmore, Huiming Xia, Joshua F McMichael, Jason Kunisaki, Katie M Campbell, Timothy Hung-Po Chen, Emily B Rozycki, Douglas Adkins, Siddhartha Devarakonda, Sumithra Sankararaman, Yiing Lin, William C Chapman, Christopher A Maher, Vivek K Arora, Gavin P Dunn, Ravindra Uppaluri, Ramaswamy Govindan, Malachi Griffith, Malachi Griffith
Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer. Nature communications 14 (1) (2023)
Kelsy C Cotto, Yang-Yang Feng, Avinash Ramu, Megan M Richters, Sharon L Freshour, Zachary L Skidmore, Huiming Xia, Joshua F McMichael, Jason Kunisaki, Katie M Campbell, Timothy Hung-Po Chen, Emily B Rozycki, Douglas Adkins, Siddhartha Devarakonda, Sumithra Sankararaman, Yiing Lin, William C Chapman, Christopher A Maher, Vivek K Arora, Gavin P Dunn, Ravindra Uppaluri, Ramaswamy Govindan, Malachi Griffith, Malachi Griffith
Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer. Nature communications 14 (1) (2023)
Sidi Zhao, Amy Ly, Jacqueline L Mudd, Emily B Rozycki, Jace Webster, Emily Coonrod, Ghofran Othoum, Jingqin R Luo, Ha X Dang, Ryan C Fields, Christopher A Maher
Characterization of cell-type specific circular RNAs associated with colorectal cancer metastasis. NAR cancer 5 (2) (2023)
Kelsy C Cotto, Yang-Yang Feng, Avinash Ramu, Megan M Richters, Sharon L Freshour, Zachary L Skidmore, Huiming Xia, Joshua F McMichael, Jason Kunisaki, Katie M Campbell, Timothy Hung-Po Chen, Emily B Rozycki, Douglas Adkins, Siddhartha Devarakonda, Sumithra Sankararaman, Yiing Lin, William C Chapman, Christopher A Maher, Vivek K Arora, Gavin P Dunn, Ravindra Uppaluri, Ramaswamy Govindan, Malachi Griffith, Malachi Griffith
Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer. Nature communications 14 (1) (2023)
Andrew Nickless, Jin Zhang, Ghofran Othoum, Jace Webster, Matthew J Inkman, Emily Coonrod, Sherron Fontes, Emily B Rozycki, Christopher A Maher, Nicole M White
Pan-Cancer Analysis Reveals Recurrent BCAR4 Gene Fusions across Solid Tumors. Molecular cancer research : MCR 20 (10) (2022)
Abdallah M Eteleeb, Prasanth K Thunuguntla, Kyla Z Gelev, Cynthia Y Tang, Emily B Rozycki, Alexander Miller, Jonathan T Lei, Reyka G Jayasinghe, Ha X Dang, Nicole M White, Jorge Sergio Reis-Filho, Elaine R Mardis, Matthew J Ellis, Li Ding, Jessica M Silva-Fisher, Christopher A Maher
LINC00355 regulates p27 KIP expression by binding to MENIN to induce proliferation in late-stage relapse breast cancer. NPJ breast cancer 8 (1) (2022)
Martin Sjostrom, Shuang G Zhao, Samuel Levy, Meng Zhang, Yuhong Ning, Raunak Shrestha, Arian Lundberg, Cameron Herberts, Adam Foye, Rahul R Aggarwal, Junjie T Hua, Haolong Li, Anna Bergamaschi, Corinne Maurice-Dror, Ashutosh Maheshwari, Sujun Chen, Sarah W S Ng, Michael Fraser, Jessica Petricca, Michael Fraser, Lisa Chesner, Marc D Perry, Thaidy Moreno-Rodriguez, William S Chen, Joshi J Alumkal, Jonathan Chou, Alicia K Morgans, Tomasz M Beer, George V Thomas, Martin Gleave, Paul Lloyd, Tierney Phillips, Erin McCarthy, Michael C Haffner, Amina Zoubeidi, Matti Annala, Robert E Reiter, Matthew B Rettig, Owen N Witte, Lawrence Fong, Rohit Bose, Franklin W Huang, Joshua M Lang, Anders Bjartell, Nupam P Mahajan, Primo N Lara, Christopher P Evans, Phuoc T Tran, Edwin M Posadas, Chuan He, Xiao-Long Cui, Jiaoti Huang, Wilbert Zwart, Luke A Gilbert, Christopher A Maher, Paul C Boutros, Kim N Chi, Alan Ashworth, Eric J Small, Housheng Hansen He, Alexander W Wyatt, David A Quigley, Felix Y Feng
The 5-Hydroxymethylcytosine Landscape of Prostate Cancer. Cancer research 82 (21) (2022)
Siyuan John Liu, Ha X Dang, Daniel A Lim, Felix Y Feng, Christopher A Maher
Long noncoding RNAs in cancer metastasis. Nature reviews. Cancer 21 (7) (2021)
Shuang G Zhao, William S Chen, Haolong Li, Adam Foye, Meng Zhang, Martin Sjostrom, Rahul Aggarwal, Denise Playdle, Arnold Liao, Joshi J Alumkal, Rajdeep Das, Jonathan Chou, Junjie T Hua, Travis J Barnard, Adina M Bailey, Eric D Chow, Marc D Perry, Ha X Dang, Rendong Yang, Ruhollah Moussavi-Baygi, Li Zhang, Mohammed Alshalalfa, S Laura Chang, Kathleen E Houlahan, Yu-Jia Shiah, Tomasz M Beer, George Thomas, Kim N Chi, Martin Gleave, Amina Zoubeidi, Robert E Reiter, Matthew B Rettig, Owen Witte, M Yvonne Kim, Lawrence Fong, Daniel E Spratt, Todd M Morgan, Rohit Bose, Franklin W Huang, Hui Li, Lisa Chesner, Tanushree Shenoy, Hani Goodarzi, Irfan A Asangani, Shahneen Sandhu, Joshua M Lang, Nupam P Mahajan, Primo N Lara, Christopher P Evans, Phillip Febbo, Serafim Batzoglou, Karen E Knudsen, Housheng Hansen He, Jiaoti Huang, Wilbert Zwart, Joseph F Costello, Jianhua Luo, Scott A Tomlins, Alexander W Wyatt, Scott M Dehm, Alan Ashworth, Luke A Gilbert, Paul C Boutros, Kyle Kai-How Farh, Sunita Shankar, Christopher A Maher, Eric J Small, David A Quigley, Felix Y Feng
The DNA methylation landscape of advanced prostate cancer. Nature genetics 52 (8) (2020)
Ghofran Othoum, Emily Coonrod, Sidi Zhao, Ha X Dang, Christopher A Maher
Pan-cancer proteogenomic analysis reveals long and circular noncoding RNAs encoding peptides. NAR cancer 2 (3) (2020)
Abdallah M Eteleeb, David A Quigley, Shuang G Zhao, Duy Pham, Rendong Yang, Scott M Dehm, Jingqin R Luo, Felix Y Feng, Ha X Dang, Christopher A Maher
SV-HotSpot: detection and visualization of hotspots targeted by structural variants associated with gene expression. Scientific reports 10 (1) (2020)
Ha X Dang, Bradley Aaron Krasnick, Brian S White, Julie G Grossman, Matthew S Strand, Jin Zhang, Christopher R Cabanski, Christopher A Miller, Robert S Fulton, S Peter Goedegebuure, Catrina C Fronick, Malachi Griffith, David E Larson, Brian D Goetz, Jason R Walker, William G Hawkins, Steven M Strasberg, David C Linehan, Kian-Huat Lim, A Craig Lockhart, Elaine R Mardis, Richard K Wilson, Timothy J Ley, Christopher A Maher, Ryan C Fields
The clonal evolution of metastatic colorectal cancer. Science advances 6 (24) (2020)
Jessica M Silva-Fisher, Ha X Dang, Nicole M White, Matthew S Strand, Bradley A Krasnick, Emily B Rozycki, Gejae G L Jeffers, Julie G Grossman, Maureen K Highkin, Cynthia Y Tang, Christopher R Cabanski, Abdallah Eteleeb, Jacqueline Mudd, S Peter Goedegebuure, Jingqin Luo, Elaine R Mardis, Richard K Wilson, Timothy J Ley, Albert C Lockhart, Ryan C Fields, Christopher A Maher
Long non-coding RNA RAMS11 promotes metastatic colorectal cancer progression. Nature communications 11 (1) (2020)