Sheng-You Huang (Shengyou Huang)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 30

Top Venues

Journal of chemical information and modeling

Proteins

Nature communications

International journal of molecular sciences

This page only lists publications with an associated author ORCID identifier.

Publications

Tao Li, Jiahua He, Hong Cao, Yi Zhang, Ji Chen, Yi Xiao, Sheng-You Huang
All-atom RNA structure determination from cryo-EM maps. Nature biotechnology (2024)
Marc F Lensink, Guillaume Brysbaert, Nessim Raouraoua, Paul A Bates, Marco Giulini, Rodrigo V Honorato, Charlotte van Noort, Joao M C Teixeira, Alexandre M J J Bonvin, Ren Kong, Hang Shi, Xufeng Lu, Shan Chang, Jian Liu, Zhiye Guo, Xiao Chen, Alex Morehead, Raj S Roy, Tianqi Wu, Nabin Giri, Farhan Quadir, Chen Chen, Jianlin Cheng, Carlos A Del Carpio, Eichiro Ichiishi, Luis A Rodriguez-Lumbreras, Juan Fernandez-Recio, Ameya Harmalkar, Lee-Shin Chu, Sam Canner, Rituparna Smanta, Jeffrey J Gray, Hao Li, Peicong Lin, Jiahua He, Huanyu Tao, Sheng-You Huang, Jorge Roel-Touris, Brian Jimenez-Garcia, Charles W Christoffer, Anika J Jain, Yuki Kagaya, Harini Kannan, Tsukasa Nakamura, Genki Terashi, Jacob C Verburgt, Yuanyuan Zhang, Zicong Zhang, Hayato Fujuta, Masakazu Sekijima, Daisuke Kihara, Omeir Khan, Sergei Kotelnikov, Usman Ghani, Dzmitry Padhorny, Dmitri Beglov, Sandor Vajda, Dima Kozakov, Surendra S Negi, Tiziana Ricciardelli, Didier Barradas-Bautista, Zhen Cao, Mohit Chawla, Luigi Cavallo, Romina Oliva, Rui Yin, Melyssa Cheung, Johnathan D Guest, Jessica Lee, Brian G Pierce, Ben Shor, Tomer Cohen, Matan Halfon, Dina Schneidman-Duhovny, Shaowen Zhu, Rujie Yin, Yuanfei Sun, Yang Shen, Martyna Maszota-Zieleniak, Krzysztof K Bojarski, Emilia A Lubecka, Mateusz Marcisz, Annemarie Danielsson, Lukasz Dziadek, Margrethe Gaardlos, Artur Gieldon, Adam Liwo, Sergey A Samsonov, Rafal Slusarz, Karolina Zieba, Adam K Sieradzan, Cezary Czaplewski, Shinpei Kobayashi, Yuta Miyakawa, Yasuomi Kiyota, Mayuko Takeda-Shitaka, Kliment Olechnovič, Lukas Valancauskas, Justas Dapkunas, Ceslovas Venclovas, Björn Wallner, Lin Yang, Chengyu Hou, Xiaodong He, Shuai Guo, Shenda Jiang, Xiaoliang Ma, Rui Duan, Liming Qui, Xianjin Xu, Xiaoqin Zou, Sameer Velankar, Shoshana J Wodak
Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment. Proteins (2023)
Xuejun Zhao, Hao Li, Keqiong Zhang, Sheng-You Huang
Iterative Knowledge-Based Scoring Function for Protein-Ligand Interactions by Considering Binding Affinity Information. The journal of physical chemistry. B (2023)
Jiahua He, Tao Li, Sheng-You Huang
Improvement of cryo-EM maps by simultaneous local and non-local deep learning. Nature communications 14 (1) (2023)
Peicong Lin, Yumeng Yan, Huanyu Tao, Sheng-You Huang
Deep transfer learning for inter-chain contact predictions of transmembrane protein complexes. Nature communications 14 (1) (2023)
Huanyu Tao, Qilong Wu, Xuejun Zhao, Peicong Lin, Sheng-You Huang
Efficient 3D conformer generation of cyclic peptides formed by a disulfide bond. Journal of cheminformatics 14 (1) (2022)
Linyuan Guo, Jiahua He, Peicong Lin, Sheng-You Huang, Jian-Xin Wang
TRScore: a 3D RepVGG-based scoring method for ranking protein docking models. Bioinformatics (Oxford, England) 38 (9) (2022)
Huanyu Tao, Xuejun Zhao, Keqiong Zhang, Peicong Lin, Sheng-You Huang
Docking cyclic peptides formed by a disulfide bond through a hierarchical strategy. Bioinformatics (Oxford, England) 38 (17) (2022)
Jiahua He, Peicong Lin, Ji Chen, Hong Cao, Sheng-You Huang
Model building of protein complexes from intermediate-resolution cryo-EM maps with deep learning-guided automatic assembly. Nature communications 13 (1) (2022)
Anming Yang, Huanyu Tao, Lindsey C Szymczak, Liang Lin, Junfeng Song, Yi Wang, Silei Bai, Justin Modica, Sheng-You Huang, Milan Mrksich, Xinxin Feng
Efficient Enzymatic Incorporation of Dehydroalanine Based on SAMDI-Assisted Identification of Optimized Tags for OspF/SpvC. ACS chemical biology 17 (2) (2022)
Hao Li, Yumeng Yan, Xuejun Zhao, Sheng-You Huang
Inclusion of Desolvation Energy into Protein-Protein Docking through Atomic Contact Potentials. Journal of chemical information and modeling 62 (3) (2022)
E Lei, Huanyu Tao, Shang Jiao, Anming Yang, Yu Zhou, Min Wang, Kang Wen, Yi Wang, Zhiyong Chen, Xianhui Chen, Junfeng Song, Cailing Zhou, Wei Huang, Lili Xu, Dongliang Guan, Cuiyan Tan, Haoran Liu, Qingyun Cai, Kai Zhou, Justin Modica, Sheng-You Huang, Wei Huang, Xinxin Feng
Potentiation of Vancomycin: Creating Cooperative Membrane Lysis through a "Derivatization-for-Sensitization" Approach. Journal of the American Chemical Society 144 (23) (2022)
Jinze Zhang, Hao Li, Xuejun Zhao, Qilong Wu, Sheng-You Huang
Holo Protein Conformation Generation from Apo Structures by Ligand Binding Site Refinement. Journal of chemical information and modeling 62 (22) (2022)
Hao Li, Eddie Huang, Yi Zhang, Sheng-You Huang, Yi Xiao
HDOCK update for modeling protein-RNA/DNA complex structures. Protein science : a publication of the Protein Society 31 (11) (2022)
Derek Huang, Huanyu Tao, Qilong Wu, Sheng-You Huang, Yi Xiao
Modeling of the Long-Term Epidemic Dynamics of COVID-19 in the United States. International journal of environmental research and public health 18 (14) (2021)
Fuqing Hu, Da Song, Yumeng Yan, Changsheng Huang, Chentao Shen, Jingqin Lan, Yaqi Chen, Anyi Liu, Qi Wu, Li Sun, Feng Xu, Fayong Hu, Lisheng Chen, Xuelai Luo, Yongdong Feng, Sheng-You Huang, Junbo Hu, Guihua Wang
IL-6 regulates autophagy and chemotherapy resistance by promoting BECN1 phosphorylation. Nature communications 12 (1) (2021)
Marc F Lensink, Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphael A G Chaleil, Tereza Clarence, Paul A Bates, Ren Kong, Bin Liu, Guangbo Yang, Ming Liu, Hang Shi, Xufeng Lu, Shan Chang, Raj S Roy, Farhan Quadir, Jian Liu, Jianlin Cheng, Anna Antoniak, Cezary Czaplewski, Artur Giełdoń, Mateusz Kogut, Agnieszka G Lipska, Adam Liwo, Emilia A Lubecka, Martyna Maszota-Zieleniak, Adam K Sieradzan, Rafał Ślusarz, Patryk A Wesołowski, Karolina Zięba, Carlos A Del Carpio Muñoz, Eiichiro Ichiishi, Ameya Harmalkar, Jeffrey J Gray, Alexandre M J J Bonvin, Francesco Ambrosetti, Rodrigo Vargas Honorato, Zuzana Jandova, Brian Jiménez-García, Panagiotis I Koukos, Siri Van Keulen, Charlotte W Van Noort, Manon Réau, Jorge Roel-Touris, Sergei Kotelnikov, Dzmitry Padhorny, Kathryn A Porter, Andrey Alekseenko, Mikhail Ignatov, Israel Desta, Ryota Ashizawa, Zhuyezi Sun, Usman Ghani, Nasser Hashemi, Sandor Vajda, Dima Kozakov, Mireia Rosell, Luis A Rodríguez-Lumbreras, Juan Fernández-Recio, Agnieszka Karczynska, Sergei Grudinin, Yumeng Yan, Hao Li, Peicong Lin, Sheng-You Huang, Charles W Christoffer, Genki Terashi, Jacob Verburgt, Daipayan Sarkar, Tunde Aderinwale, Xiao Wang, Daisuke Kihara, Tsukasa Nakamura, Yuya Hanazono, Ragul Gowthaman, Johnathan D Guest, Rui Yin, Ghazaleh Taherzadeh, Brian G Pierce, Didier Barradas-Bautista, Zhen Cao, Luigi Cavallo, Romina Oliva, Yuanfei Sun, Shaowen Zhu, Yang Shen, Taeyong Park, Hyeonuk Woo, Jinsol Yang, Sohee Kwon, Jonghun Won, Chaok Seok, Yasuomi Kiyota, Shinpei Kobayashi, Yoshiki Harada, Mayuko Takeda-Shitaka, Petras J Kundrotas, Amar Singh, Ilya A Vakser, Justas Dapkunas, Kliment Olechnovič, Česlovas Venclovas, Rui Duan, Liming Qiu, Xianjin Xu, Shuang Zhang, Xiaoqin Zou, Shoshana J Wodak
Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment. Proteins 89 (12) (2021)
Yuyu Feng, Keqiong Zhang, Qilong Wu, Sheng-You Huang
NLDock: a Fast Nucleic Acid-Ligand Docking Algorithm for Modeling RNA/DNA-Ligand Complexes. Journal of chemical information and modeling 61 (9) (2021)
Yumeng Yan, Huanyu Tao, Jiahua He, Sheng-You Huang
The HDOCK server for integrated protein-protein docking. Nature protocols 15 (5) (2020)
Yuyu Feng, Sheng-You Huang
ITScore-NL: An Iterative Knowledge-Based Scoring Function for Nucleic Acid-Ligand Interactions. Journal of chemical information and modeling 60 (12) (2020)
Huanyu Tao, Yanjun Zhang, Sheng-You Huang
Improving Protein-Peptide Docking Results via Pose-Clustering and Rescoring with a Combined Knowledge-Based and MM-GBSA Scoring Function. Journal of chemical information and modeling 60 (4) (2020)
Jiahua He, Huanyu Tao, Yumeng Yan, Sheng-You Huang, Yi Xiao
Molecular Mechanism of Evolution and Human Infection with SARS-CoV-2. Viruses 12 (4) (2020)
Yumeng Yan, Jiahua He, Yuyu Feng, Peicong Lin, Huanyu Tao, Sheng-You Huang
Challenges and opportunities of automated protein-protein docking: HDOCK server vs human predictions in CAPRI Rounds 38-46. Proteins 88 (8) (2020)
Marc F Lensink, Guillaume Brysbaert, Nurul Nadzirin, Sameer Velankar, Raphael A G Chaleil, Tereza Gerguri, Paul A Bates, Elodie Laine, Alessandra Carbone, Sergei Grudinin, Ren Kong, Ran-Ran Liu, Xi-Ming Xu, Hang Shi, Shan Chang, Miriam Eisenstein, Agnieszka Karczynska, Cezary Czaplewski, Emilia Lubecka, Agnieszka Lipska, Paweł Krupa, Magdalena Mozolewska, Łukasz Golon, Sergey Samsonov, Adam Liwo, Silvia Crivelli, Guillaume Pagès, Mikhail Karasikov, Maria Kadukova, Yumeng Yan, Sheng-You Huang, Mireia Rosell, Luis A Rodríguez-Lumbreras, Miguel Romero-Durana, Lucía Díaz-Bueno, Juan Fernández-Recio, Charles W Christoffer, Genki Terashi, Woong-Hee Shin, Tunde Aderinwale, Sai Raghavendra Maddhuri Venkata Subraman, Daisuke Kihara, Dima Kozakov, Sandor Vajda, Kathryn Porter, Dzmitry Padhorny, Israel Desta, Dmitri Beglov, Mikhail Ignatov, Sergey Kotelnikov, Iain H Moal, David W Ritchie, Isaure Chauvot de Beauchene, Bernard Maigret, Marie-Dominique Devignes, Maria E Ruiz Echartea, Didier Barradas-Bautista, Zhen Cao, Luigi Cavallo, Romina Oliva, Yue Cao, Yang Shen, Minkyung Baek, Taeyong Park, Hyeonuk Woo, Chaok Seok, Merav Braitbard, Lirane Bitton, Dina Scheidman-Duhovny, Justas Dapkunas, Kliment Olechnovič, Česlovas Venclovas, Petras J Kundrotas, Saveliy Belkin, Devlina Chakravarty, Varsha D Badal, Ilya A Vakser, Thom Vreven, Sweta Vangaveti, Tyler Borrman, Nishigandha Phalke, Johnathan D Guest, Ragul Gowthaman, Brian G Pierce, Xianjin Xu, Rui Duan, Liming Qiu, Jie Hou, Benjamin Ryan Merideth, Zhiwei Ma, Jianlin Cheng, Xiaoqin Zou, Panagiotis I Koukos, Jorge Roel-Touris, Francesco Ambrosetti, Cunliang Geng, Jörg Schaarschmidt, Mikael E Trellet, Adrien S J Melquiond, Li Xue, Brian Jiménez-García, Charlotte W van Noort, Rodrigo V Honorato, Alexandre M J J Bonvin, Shoshana J Wodak
Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment. Proteins 87 (12) (2019)
Yanjun Zhang, Huanyu Tao, Sheng-You Huang
Dynamics and Mechanisms in the Recruitment and Transference of Histone Chaperone CIA/ASF1. International journal of molecular sciences 20 (13) (2019)
Xinxiang Wang, Sheng-You Huang
Integrating Bonded and Nonbonded Potentials in the Knowledge-Based Scoring Function for Protein Structure Prediction. Journal of chemical information and modeling 59 (6) (2019)
Yanjun Zhang, Sheng-You Huang
Exploring the Binding Mechanism and Dynamics of EndoMS/NucS to Mismatched dsDNA. International journal of molecular sciences 20 (20) (2019)
Xinxiang Wang, Di Zhang, Sheng-You Huang
New Knowledge-Based Scoring Function with Inclusion of Backbone Conformational Entropies from Protein Structures. Journal of chemical information and modeling 58 (3) (2018)
Pei Zhou, Botong Li, Yumeng Yan, Bowen Jin, Libang Wang, Sheng-You Huang
Hierarchical Flexible Peptide Docking by Conformer Generation and Ensemble Docking of Peptides. Journal of chemical information and modeling 58 (6) (2018)
Yumeng Yan, Zeyu Wen, Xinxiang Wang, Sheng-You Huang
Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking. Proteins 85 (3) (2017)

Sheng-You Huang.css-eqlu8i{font-size:small;padding-left:4px;} (Shengyou Huang)

Publication Activity (10 Years)

Top Topics

Top Venues

Sheng-You Huang (Shengyou Huang)