Sandor Vajda

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 36

Top Venues

Journal of chemical information and modeling

Proteins

International journal of molecular sciences

Journal of medicinal chemistry

Boston University

Hungarian Academy of Sciences (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Boston University Sep 01 2007

United States

Professor :: Chemistry

Boston University Sep 01 2000

United States

Professor :: Biomedical Engineering

Boston University Sep 01 1990 - Aug 31 2000

United States

Associate Professor :: Biomedical Engineering

Icahn School of Medicine at Mount Sinai Sep 01 1989 - Aug 31 1990

United States

Associate Professor :: Mathematical Biosciences

Icahn School of Medicine at Mount Sinai Sep 01 1987 - Aug 31 1989

United States

Assistant Professor :: Mathematical Biosciences

Princeton University Sep 01 1986 - Aug 31 1987

United States

Research Staff Member :: Chemistry & Mechanical Engineering

University of Warwick Sep 01 1985 - Aug 31 1986

United Kingdom

Research Fellow :: Engineering

Eotvos Lorand Tudomanyegyetem Természettudományi Kar Sep 01 1978 - Aug 30 1985

Hungary

Associate Professor :: Chemistry

Eotvos Lorand Tudomanyegyetem Természettudományi Kar Sep 01 1973 - Aug 31 1978

Hungary

Assistant Professor :: Chemistry

Pannon Egyetem Sep 01 1972 - Aug 31 1973

Hungary

Assistant Professor :: Mathematics

Education History

Hungarian Academy of Sciences Sep 01 1977 - Jun 30 1983

Hungary

PHD :: Chemistry

Pannon Egyetem Sep 01 1973 - Jun 30 1976

Hungary

PHD :: Chemical Engineering

Publications

Ayse A Bekar-Cesaretli, Omeir Khan, Thu Nguyen, Dima Kozakov, Diane Joseph-Mccarthy, Sandor Vajda
Conservation of Hot Spots and Ligand Binding Sites in Protein Models by AlphaFold2. Journal of chemical information and modeling (2024)
Ayse A Bekar-Cesaretli, Omeir Khan, Thu Nguyen, Dima Kozakov, Diane Joseph-Mccarthy, Sandor Vajda
Conservation of Hot Spots and Ligand Binding Sites in Protein Models by AlphaFold2. Journal of chemical information and modeling 64 (3) (2024)
Omeir Khan, George Jones, Maria Lazou, Diane Joseph-McCarthy, Dima Kozakov, Dmitri Beglov, Sandor Vajda
Expanding FTMap for Fragment-Based Identification of Pharmacophore Regions in Ligand Binding Sites. Journal of chemical information and modeling 64 (6) (2024)
Ayse A Bekar-Cesaretli, Omeir Khan, Thu Nguyen, Dima Kozakov, Diane Joseph-Mccarthy, Sandor Vajda
Conservation of Hot Spots and Ligand Binding Sites in Protein Models by AlphaFold2. Journal of chemical information and modeling 64 (3) (2024)
Omeir Khan, George Jones, Maria Lazou, Diane Joseph-McCarthy, Dima Kozakov, Dmitri Beglov, Sandor Vajda
Expanding FTMap for Fragment-Based Identification of Pharmacophore Regions in Ligand Binding Sites. Journal of chemical information and modeling 64 (6) (2024)
Omeir Khan, George Jones, Maria Lazou, Diane Joseph-McCarthy, Dima Kozakov, Dmitri Beglov, Sandor Vajda
Expanding FTMap for Fragment-Based Identification of Pharmacophore Regions in Ligand Binding Sites. Journal of chemical information and modeling 64 (6) (2024)
Omeir Khan, George Jones, Maria Lazou, Diane Joseph-McCarthy, Dima Kozakov, Dmitri Beglov, Sandor Vajda
Expanding FTMap for Fragment-Based Identification of Pharmacophore Regions in Ligand Binding Sites. Journal of chemical information and modeling (2024)
Ayse A Bekar-Cesaretli, Omeir Khan, Thu Nguyen, Dima Kozakov, Diane Joseph-Mccarthy, Sandor Vajda
Conservation of Hot Spots and Ligand Binding Sites in Protein Models by AlphaFold2. Journal of chemical information and modeling 64 (3) (2024)
Ayse A Bekar-Cesaretli, Omeir Khan, Thu Nguyen, Dima Kozakov, Diane Joseph-Mccarthy, Sandor Vajda
Conservation of Hot Spots and Ligand Binding Sites in Protein Models by AlphaFold2. Journal of chemical information and modeling 64 (3) (2024)
Ayse A Bekar-Cesaretli, Omeir Khan, Thu Nguyen, Dima Kozakov, Diane Joseph-Mccarthy, Sandor Vajda
Conservation of Hot Spots and Ligand Binding Sites in Protein Models by AlphaFold2. Journal of chemical information and modeling 64 (3) (2024)
Ayse A Bekar-Cesaretli, Omeir Khan, Thu Nguyen, Dima Kozakov, Diane Joseph-Mccarthy, Sandor Vajda
Conservation of Hot Spots and Ligand Binding Sites in Protein Models by AlphaFold2. Journal of chemical information and modeling (2024)
Omeir Khan, George Jones, Maria Lazou, Diane Joseph-McCarthy, Dima Kozakov, Dmitri Beglov, Sandor Vajda
Expanding FTMap for Fragment-Based Identification of Pharmacophore Regions in Ligand Binding Sites. Journal of chemical information and modeling 64 (6) (2024)
Ayse A Bekar-Cesaretli, Omeir Khan, Thu Nguyen, Dima Kozakov, Diane Joseph-Mccarthy, Sandor Vajda
Conservation of Hot Spots and Ligand Binding Sites in Protein Models by AlphaFold2. Journal of chemical information and modeling 64 (3) (2024)
Ayse A Bekar-Cesaretli, Omeir Khan, Thu Nguyen, Dima Kozakov, Diane Joseph-Mccarthy, Sandor Vajda
Conservation of Hot Spots and Ligand Binding Sites in Protein Models by AlphaFold2. Journal of chemical information and modeling 64 (3) (2024)
Mikhail Ignatov, Akhil Jindal, Sergei Kotelnikov, Dmitri Beglov, Ganna Posternak, Xiaojing Tang, Pierre Maisonneuve, Gennady Poda, Robert T Batey, Frank Sicheri, Adrian Whitty, Peter J Tonge, Sandor Vajda, Dima Kozakov
High Accuracy Prediction of PROTAC Complex Structures. Journal of the American Chemical Society (2023)
Israel T Desta, Sergei Kotelnikov, George Jones, Usman Ghani, Mikhail Abyzov, Yaroslav Kholodov, Daron M Standley, Dmitri Beglov, Sandor Vajda, Dima Kozakov
The ClusPro AbEMap web server for the prediction of antibody epitopes. Nature protocols (2023)
Sergei Kotelnikov, Ryota Ashizawa, Konstantin I Popov, Omeir Khan, Mikhail Ignatov, Stan Xiaogang Li, Mosavverul Hassan, Evangelos A Coutsias, Gennady Poda, Dzmitry Padhorny, Alexander Tropsha, Sandor Vajda, Dima Kozakov
Accurate ligand-protein docking in CASP15 using the ClusPro LigTBM server. Proteins (2023)
Marc F Lensink, Guillaume Brysbaert, Nessim Raouraoua, Paul A Bates, Marco Giulini, Rodrigo V Honorato, Charlotte van Noort, Joao M C Teixeira, Alexandre M J J Bonvin, Ren Kong, Hang Shi, Xufeng Lu, Shan Chang, Jian Liu, Zhiye Guo, Xiao Chen, Alex Morehead, Raj S Roy, Tianqi Wu, Nabin Giri, Farhan Quadir, Chen Chen, Jianlin Cheng, Carlos A Del Carpio, Eichiro Ichiishi, Luis A Rodriguez-Lumbreras, Juan Fernandez-Recio, Ameya Harmalkar, Lee-Shin Chu, Sam Canner, Rituparna Smanta, Jeffrey J Gray, Hao Li, Peicong Lin, Jiahua He, Huanyu Tao, Sheng-You Huang, Jorge Roel-Touris, Brian Jimenez-Garcia, Charles W Christoffer, Anika J Jain, Yuki Kagaya, Harini Kannan, Tsukasa Nakamura, Genki Terashi, Jacob C Verburgt, Yuanyuan Zhang, Zicong Zhang, Hayato Fujuta, Masakazu Sekijima, Daisuke Kihara, Omeir Khan, Sergei Kotelnikov, Usman Ghani, Dzmitry Padhorny, Dmitri Beglov, Sandor Vajda, Dima Kozakov, Surendra S Negi, Tiziana Ricciardelli, Didier Barradas-Bautista, Zhen Cao, Mohit Chawla, Luigi Cavallo, Romina Oliva, Rui Yin, Melyssa Cheung, Johnathan D Guest, Jessica Lee, Brian G Pierce, Ben Shor, Tomer Cohen, Matan Halfon, Dina Schneidman-Duhovny, Shaowen Zhu, Rujie Yin, Yuanfei Sun, Yang Shen, Martyna Maszota-Zieleniak, Krzysztof K Bojarski, Emilia A Lubecka, Mateusz Marcisz, Annemarie Danielsson, Lukasz Dziadek, Margrethe Gaardlos, Artur Gieldon, Adam Liwo, Sergey A Samsonov, Rafal Slusarz, Karolina Zieba, Adam K Sieradzan, Cezary Czaplewski, Shinpei Kobayashi, Yuta Miyakawa, Yasuomi Kiyota, Mayuko Takeda-Shitaka, Kliment Olechnovič, Lukas Valancauskas, Justas Dapkunas, Ceslovas Venclovas, Björn Wallner, Lin Yang, Chengyu Hou, Xiaodong He, Shuai Guo, Shenda Jiang, Xiaoliang Ma, Rui Duan, Liming Qui, Xianjin Xu, Xiaoqin Zou, Sameer Velankar, Shoshana J Wodak
Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment. Proteins (2023)
Ernest Glukhov, Dmytro Kalitin, Darya Stepanenko, Yimin Zhu, Thu Nguen, George Jones, Carlos L Simmerling, Julie C Mitchell, Sandor Vajda, Ken A Dill, Dzmitry Padhorny, Dima Kozakov
MHC-Fine: Fine-tuned AlphaFold for Precise MHC-Peptide Complex Prediction. bioRxiv : the preprint server for biology (2023)
Máté Sándor, Franziska G Thiel, Margit Schmid, Alexandra Demcsák, Nataly C Morales Granda, Balázs Csaba Németh, Sandor Vajda, André Hoerning, Miklós Sahin-Tóth
Novel p.G250A Mutation Associated with Chronic Pancreatitis Highlights Misfolding-Prone Region in Carboxypeptidase A1 (CPA1). International journal of molecular sciences 23 (24) (2022)
Máté Sándor, Franziska G Thiel, Margit Schmid, Alexandra Demcsák, Nataly C Morales Granda, Balázs Csaba Németh, Sandor Vajda, André Hoerning, Miklós Sahin-Tóth
Novel p.G250A Mutation Associated with Chronic Pancreatitis Highlights Misfolding-Prone Region in Carboxypeptidase A1 (CPA1). International journal of molecular sciences 23 (24) (2022)
Máté Sándor, Franziska G Thiel, Margit Schmid, Alexandra Demcsák, Nataly C Morales Granda, Balázs Csaba Németh, Sandor Vajda, André Hoerning, Miklós Sahin-Tóth
Novel p.G250A Mutation Associated with Chronic Pancreatitis Highlights Misfolding-Prone Region in Carboxypeptidase A1 (CPA1). International journal of molecular sciences 23 (24) (2022)
Amanda E Wakefield, Dávid Bajusz, Dima Kozakov, György Miklós Keserű, Sandor Vajda
Conservation of Allosteric Ligand Binding Sites in G-Protein Coupled Receptors. Journal of chemical information and modeling 62 (20) (2022)
Máté Sándor, Franziska G Thiel, Margit Schmid, Alexandra Demcsák, Nataly C Morales Granda, Balázs Csaba Németh, Sandor Vajda, André Hoerning, Miklós Sahin-Tóth
Novel p.G250A Mutation Associated with Chronic Pancreatitis Highlights Misfolding-Prone Region in Carboxypeptidase A1 (CPA1). International journal of molecular sciences 23 (24) (2022)
Shifan Ma, Zhuyezi Sun, Yankang Jing, Mark McGann, Sandor Vajda, Istvan J Enyedy
Use of Solvent Mapping for Characterizing the Binding Site and for Predicting the Inhibition of the Human Ether-á-Go-Go-Related K + Channel. Chemical research in toxicology 35 (8) (2022)
Máté Sándor, Franziska G Thiel, Margit Schmid, Alexandra Demcsák, Nataly C Morales Granda, Balázs Csaba Németh, Sandor Vajda, André Hoerning, Miklós Sahin-Tóth
Novel p.G250A Mutation Associated with Chronic Pancreatitis Highlights Misfolding-Prone Region in Carboxypeptidase A1 (CPA1). International journal of molecular sciences 23 (24) (2022)
Israel T Desta, Sergei Kotelnikov, George Jones, Usman Ghani, Mikhail Abyzov, Yaroslav Kholodov, Daron M Standley, Maria Sabitova, Dmitri Beglov, Sandor Vajda, Dima Kozakov
Mapping of antibody epitopes based on docking and homology modeling. Proteins (2022)
Megan Egbert, Usman Ghani, Ryota Ashizawa, Sergei Kotelnikov, Thu Nguyen, Israel Desta, Nasser Hashemi, Dzmitry Padhorny, Dima Kozakov, Sandor Vajda
Assessing the binding properties of CASP14 targets and models. Proteins 89 (12) (2021)
Marc F Lensink, Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphael A G Chaleil, Tereza Clarence, Paul A Bates, Ren Kong, Bin Liu, Guangbo Yang, Ming Liu, Hang Shi, Xufeng Lu, Shan Chang, Raj S Roy, Farhan Quadir, Jian Liu, Jianlin Cheng, Anna Antoniak, Cezary Czaplewski, Artur Giełdoń, Mateusz Kogut, Agnieszka G Lipska, Adam Liwo, Emilia A Lubecka, Martyna Maszota-Zieleniak, Adam K Sieradzan, Rafał Ślusarz, Patryk A Wesołowski, Karolina Zięba, Carlos A Del Carpio Muñoz, Eiichiro Ichiishi, Ameya Harmalkar, Jeffrey J Gray, Alexandre M J J Bonvin, Francesco Ambrosetti, Rodrigo Vargas Honorato, Zuzana Jandova, Brian Jiménez-García, Panagiotis I Koukos, Siri Van Keulen, Charlotte W Van Noort, Manon Réau, Jorge Roel-Touris, Sergei Kotelnikov, Dzmitry Padhorny, Kathryn A Porter, Andrey Alekseenko, Mikhail Ignatov, Israel Desta, Ryota Ashizawa, Zhuyezi Sun, Usman Ghani, Nasser Hashemi, Sandor Vajda, Dima Kozakov, Mireia Rosell, Luis A Rodríguez-Lumbreras, Juan Fernández-Recio, Agnieszka Karczynska, Sergei Grudinin, Yumeng Yan, Hao Li, Peicong Lin, Sheng-You Huang, Charles W Christoffer, Genki Terashi, Jacob Verburgt, Daipayan Sarkar, Tunde Aderinwale, Xiao Wang, Daisuke Kihara, Tsukasa Nakamura, Yuya Hanazono, Ragul Gowthaman, Johnathan D Guest, Rui Yin, Ghazaleh Taherzadeh, Brian G Pierce, Didier Barradas-Bautista, Zhen Cao, Luigi Cavallo, Romina Oliva, Yuanfei Sun, Shaowen Zhu, Yang Shen, Taeyong Park, Hyeonuk Woo, Jinsol Yang, Sohee Kwon, Jonghun Won, Chaok Seok, Yasuomi Kiyota, Shinpei Kobayashi, Yoshiki Harada, Mayuko Takeda-Shitaka, Petras J Kundrotas, Amar Singh, Ilya A Vakser, Justas Dapkunas, Kliment Olechnovič, Česlovas Venclovas, Rui Duan, Liming Qiu, Xianjin Xu, Shuang Zhang, Xiaoqin Zou, Shoshana J Wodak
Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment. Proteins 89 (12) (2021)
Amanda E Wakefield, Christine Yueh, Dmitri Beglov, Marcelo Santos Castilho, Dima Kozakov, György Miklós Keserű, Adrian Whitty, Sandor Vajda
Benchmark Sets for Binding Hot Spot Identification in Fragment-Based Ligand Discovery. Journal of chemical information and modeling 60 (12) (2020)
Mengqi Zhong, Andrew Lynch, Samantha N Muellers, Stefan Jehle, Lingqi Luo, David R Hall, Reina Iwase, James P Carolan, Megan Egbert, Amanda Wakefield, Kristina Streu, Christine M Harvey, Paula C Ortet, Dima Kozakov, Sandor Vajda, Karen N Allen, Adrian Whitty
Interaction Energetics and Druggability of the Protein-Protein Interaction between Kelch-like ECH-Associated Protein 1 (KEAP1) and Nuclear Factor Erythroid 2 Like 2 (Nrf2). Biochemistry 59 (4) (2020)
Dzmitry Padhorny, Kathryn A Porter, Mikhail Ignatov, Andrey Alekseenko, Dmitri Beglov, Sergei Kotelnikov, Ryota Ashizawa, Israel Desta, Nawsad Alam, Zhuyezi Sun, Emiliano Brini, Ken Dill, Ora Schueler-Furman, Sandor Vajda, Dima Kozakov
ClusPro in rounds 38 to 45 of CAPRI: Toward combining template-based methods with free docking. Proteins 88 (8) (2020)
Richard Trilles, Dmitri Beglov, Qiujia Chen, Hongzhen He, Randall Wireman, April Reed, Spandan Chennamadhavuni, James S Panek, Lauren E Brown, Sandor Vajda, John A Porco, Mark R Kelley, Millie M Georgiadis
Discovery of Macrocyclic Inhibitors of Apurinic/Apyrimidinic Endonuclease 1. Journal of medicinal chemistry 62 (4) (2019)
Amanda E Wakefield, Jonathan S Mason, Sandor Vajda, György Miklós Keserű
Analysis of tractable allosteric sites in G protein-coupled receptors. Scientific reports 9 (1) (2019)
Christine Yueh, Justin Rettenmaier, Bing Xia, David R Hall, Andrey Alekseenko, Kathryn A Porter, Krister Barkovich, Gyorgy Keseru, Adrian Whitty, James A Wells, Sandor Vajda, Dima Kozakov
Kinase Atlas: Druggability Analysis of Potential Allosteric Sites in Kinases. Journal of medicinal chemistry 62 (14) (2019)
Megan Egbert, Adrian Whitty, György M Keserű, Sandor Vajda
Why Some Targets Benefit from beyond Rule of Five Drugs. Journal of medicinal chemistry 62 (22) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Sandor Vajda