Stefano Vanni

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 52

Top Topics

Molecular Dynamics Simulations

Breast Cancer Cells

Endoplasmic Reticulum

Single Molecule

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Sriraksha Srinivasan, Andrea Di Luca, Daniel Álvarez, Arun T John Peter, Charlotte Gehin, Museer A Lone, Thorsten Hornemann, Giovanni D'Angelo, Stefano Vanni
The conformational plasticity of structurally unrelated lipid transport proteins correlates with their mode of action. PLoS biology 22 (8) (2024)
Jennifer M Kefauver, Markku Hakala, Xiaoming Zou, Josephine Alba, Javier Espadas, Maria G Tettamanti, Jelena Gajić, Caroline Gabus, Pablo Campomanes, Leandro F Estrozi, Nesli E Sen, Stefano Vanni, Aurélien Roux, Ambroise Desfosses, Robbie Loewith
Cryo-EM architecture of a near-native stretch-sensitive membrane microdomain. Nature 632 (8025) (2024)
Jennifer Sapia, Stefano Vanni
Molecular dynamics simulations of intracellular lipid droplets: a new tool in the toolbox. FEBS letters (2024)
Jennifer Sapia, Stefano Vanni
Molecular dynamics simulations of intracellular lipid droplets: a new tool in the toolbox. FEBS letters 598 (10) (2024)
Janak Prabhu, Matteo Frigerio, Emanuele Petretto, Pablo Campomanes, Stefan Salentinig, Stefano Vanni
A Coarse-Grained SPICA Makeover for Solvated and Bare Sodium and Chloride Ions. Journal of chemical theory and computation (2024)
Sriraksha Srinivasan, Andrea Di Luca, Daniel Álvarez, Arun T John Peter, Charlotte Gehin, Museer A Lone, Thorsten Hornemann, Giovanni D'Angelo, Stefano Vanni
The conformational plasticity of structurally unrelated lipid transport proteins correlates with their mode of action. PLoS biology 22 (8) (2024)
Dazhi Li, Cristian Rocha-Roa, Matthew A Schilling, Karin M Reinisch, Stefano Vanni
Lipid scrambling is a general feature of protein insertases. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
Jennifer M Kefauver, Markku Hakala, Xiaoming Zou, Josephine Alba, Javier Espadas, Maria G Tettamanti, Jelena Gajić, Caroline Gabus, Pablo Campomanes, Leandro F Estrozi, Nesli E Sen, Stefano Vanni, Aurélien Roux, Ambroise Desfosses, Robbie Loewith
Cryo-EM architecture of a near-native stretch-sensitive membrane microdomain. Nature 632 (8025) (2024)
F Emil Thomasen, Tórur Skaalum, Ashutosh Kumar, Sriraksha Srinivasan, Stefano Vanni, Kresten Lindorff-Larsen
Rescaling protein-protein interactions improves Martini 3 for flexible proteins in solution. Nature communications 15 (1) (2024)
Jennifer M Kefauver, Markku Hakala, Xiaoming Zou, Josephine Alba, Javier Espadas, Maria G Tettamanti, Jelena Gajić, Caroline Gabus, Pablo Campomanes, Leandro F Estrozi, Nesli E Sen, Stefano Vanni, Aurélien Roux, Ambroise Desfosses, Robbie Loewith
Cryo-EM architecture of a near-native stretch-sensitive membrane microdomain. Nature 632 (8025) (2024)
Dazhi Li, Cristian Rocha-Roa, Matthew A Schilling, Karin M Reinisch, Stefano Vanni
Lipid scrambling is a general feature of protein insertases. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
Jennifer M Kefauver, Markku Hakala, Xiaoming Zou, Josephine Alba, Javier Espadas, Maria G Tettamanti, Jelena Gajić, Caroline Gabus, Pablo Campomanes, Leandro F Estrozi, Nesli E Sen, Stefano Vanni, Aurélien Roux, Ambroise Desfosses, Robbie Loewith
Cryo-EM architecture of a near-native stretch-sensitive membrane microdomain. Nature 632 (8025) (2024)
Jennifer Sapia, Stefano Vanni
Molecular dynamics simulations of intracellular lipid droplets: a new tool in the toolbox. FEBS letters 598 (10) (2024)
Dazhi Li, Cristian Rocha-Roa, Matthew A Schilling, Karin M Reinisch, Stefano Vanni
Lipid scrambling is a general feature of protein insertases. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
F Emil Thomasen, Tórur Skaalum, Ashutosh Kumar, Sriraksha Srinivasan, Stefano Vanni, Kresten Lindorff-Larsen
Rescaling protein-protein interactions improves Martini 3 for flexible proteins in solution. Nature communications 15 (1) (2024)
F Emil Thomasen, Tórur Skaalum, Ashutosh Kumar, Sriraksha Srinivasan, Stefano Vanni, Kresten Lindorff-Larsen
Rescaling protein-protein interactions improves Martini 3 for flexible proteins in solution. Nature communications 15 (1) (2024)
Dazhi Li, Cristian Rocha-Roa, Matthew A Schilling, Karin M Reinisch, Stefano Vanni
Lipid scrambling is a general feature of protein insertases. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
Jennifer M Kefauver, Markku Hakala, Xiaoming Zou, Josephine Alba, Javier Espadas, Maria G Tettamanti, Jelena Gajić, Caroline Gabus, Pablo Campomanes, Leandro F Estrozi, Nesli E Sen, Stefano Vanni, Aurélien Roux, Ambroise Desfosses, Robbie Loewith
Cryo-EM architecture of a near-native stretch-sensitive membrane microdomain. Nature 632 (8025) (2024)
Dazhi Li, Cristian Rocha-Roa, Matthew A Schilling, Karin M Reinisch, Stefano Vanni
Lipid scrambling is a general feature of protein insertases. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
Sriraksha Srinivasan, Daniel Álvarez, Arun T John Peter, Stefano Vanni
Unbiased MD simulations identify lipid binding sites in lipid transfer proteins. The Journal of cell biology 223 (11) (2024)
Jennifer M Kefauver, Markku Hakala, Xiaoming Zou, Josephine Alba, Javier Espadas, Maria G Tettamanti, Jelena Gajić, Caroline Gabus, Pablo Campomanes, Leandro F Estrozi, Nesli E Sen, Stefano Vanni, Aurélien Roux, Ambroise Desfosses, Robbie Loewith
Cryo-EM architecture of a near-native stretch-sensitive membrane microdomain. Nature (2024)
Sriraksha Srinivasan, Andrea Di Luca, Daniel Álvarez, Arun T John Peter, Charlotte Gehin, Museer A Lone, Thorsten Hornemann, Giovanni D'Angelo, Stefano Vanni
The conformational plasticity of structurally unrelated lipid transport proteins correlates with their mode of action. PLoS biology 22 (8) (2024)
Emanuele Petretto, Pablo Campomanes, Stefano Vanni
Development of a coarse-grained model for surface-functionalized gold nanoparticles: towards an accurate description of their aggregation behavior. Soft matter 19 (18) (2023)
Emanuele Petretto, Pablo Campomanes, Stefano Vanni
Development of a coarse-grained model for surface-functionalized gold nanoparticles: towards an accurate description of their aggregation behavior. Soft matter (2023)
Emanuele Petretto, Pablo Campomanes, Stefano Vanni
Development of a coarse-grained model for surface-functionalized gold nanoparticles: towards an accurate description of their aggregation behavior. Soft matter 19 (18) (2023)
Dazhi Li, Cristian Rocha-Roa, Matthew A Schilling, Karin M Reinisch, Stefano Vanni
Lipid scrambling is a general feature of protein insertases. bioRxiv : the preprint server for biology (2023)
Janak Prabhu, Akhil Pratap Singh, Stefano Vanni
An in silico osmotic pressure approach allows characterization of pressure-area isotherms of lipid monolayers at low molecular areas. Soft matter 19 (18) (2023)
Raffaele Nicastro, Laura Brohée, Josephine Alba, Julian Nüchel, Gianluca Figlia, Stefanie Kipschull, Peter Gollwitzer, Jesus Romero-Pozuelo, Stephanie de Alcantara Fernandes, Andreas Lamprakis, Stefano Vanni, Aurelio A Teleman, Claudio De Virgilio, Constantinos Demetriades
Malonyl-CoA is a conserved endogenous ATP-competitive mTORC1 inhibitor. Nature cell biology (2023)
Emanuele Petretto, Pablo Campomanes, Stefano Vanni
Development of a coarse-grained model for surface-functionalized gold nanoparticles: towards an accurate description of their aggregation behavior. Soft matter 19 (18) (2023)
Janak Prabhu, Akhil Pratap Singh, Stefano Vanni
An in silico osmotic pressure approach allows characterization of pressure-area isotherms of lipid monolayers at low molecular areas. Soft matter 19 (18) (2023)
Emanuele Petretto, Pablo Campomanes, Stefano Vanni
Development of a coarse-grained model for surface-functionalized gold nanoparticles: towards an accurate description of their aggregation behavior. Soft matter (2023)
Emanuele Petretto, Pablo Campomanes, Stefano Vanni
Development of a coarse-grained model for surface-functionalized gold nanoparticles: towards an accurate description of their aggregation behavior. Soft matter (2023)
Janak Prabhu, Akhil Pratap Singh, Stefano Vanni
An in silico osmotic pressure approach allows characterization of pressure-area isotherms of lipid monolayers at low molecular areas. Soft matter 19 (18) (2023)
Luís Borges-Araújo, Ilias Patmanidis, Akhil P Singh, Lucianna H S Santos, Adam K Sieradzan, Stefano Vanni, Cezary Czaplewski, Sergio Pantano, Wataru Shinoda, Luca Monticelli, Jozef Adam Liwo, Siewert-Jan Marrink, Paulo Cesar Telles de Souza
Pragmatic Coarse-Graining of Proteins: Models and Applications. Journal of chemical theory and computation (2023)
Teppei Yamada, Yusuke Miyazaki, Shogo Harada, Ashutosh Kumar, Stefano Vanni, Wataru Shinoda
Improved Protein Model in SPICA Force Field. Journal of chemical theory and computation (2023)
Janak Prabhu, Akhil Pratap Singh, Stefano Vanni
An in silico osmotic pressure approach allows characterization of pressure-area isotherms of lipid monolayers at low molecular areas. Soft matter (2023)
Michael R Wozny, Andrea Di Luca, Dustin R Morado, Andrea Picco, Rasha Khaddaj, Pablo Campomanes, Lazar Ivanović, Patrick C Hoffmann, Elizabeth A Miller, Stefano Vanni, Wanda Kukulski
In situ architecture of the ER-mitochondria encounter structure. Nature (2023)
Emanuele Petretto, Quy K Ong, Francesca Olgiati, Ting Mao, Pablo Campomanes, Francesco Stellacci, Stefano Vanni
Monovalent ion-mediated charge-charge interactions drive aggregation of surface-functionalized gold nanoparticles. Nanoscale 14 (40) (2022)
Sol Sotillos, Isabel von der Decken, Ivan Domenech Mercadé, Sriraksha Srinivasan, Dmytro Sirokha, Ludmila Livshits, Stefano Vanni, Serge Nef, Anna Biason-Lauber, Daniel Rodríguez Gutiérrez, James Castelli-Gair Hombría
A conserved function of Human DLC3 and Drosophila Cv-c in testis development. eLife 11 (2022)
Sean W Rogers, Long Gui, Anastasiia Kovalenko, Valeria Zoni, Maxime Carpentier, Kamran Ramji, Kalthoum Ben Mbarek, Amelie Bacle, Patrick F J Fuchs, Pablo Campomanes, Evan Reetz, Natalie Ortiz Speer, Emma Reynolds, Abdou Rachid Thiam, Stefano Vanni, Daniela Nicastro, W Mike Henne
Triglyceride lipolysis triggers liquid crystalline phases in lipid droplets and alters the LD proteome. The Journal of cell biology 221 (11) (2022)
Aleksandra K Adamczyk, Teun A P M Huijben, Miguel Sison, Andrea Di Luca, Germán Chiarelli, Stefano Vanni, Sophie Brasselet, Kim I Mortensen, Fernando D Stefani, Mauricio Pilo-Pais, Guillermo P Acuna
DNA Self-Assembly of Single Molecules with Deterministic Position and Orientation. ACS nano 16 (10) (2022)
Valeria Zoni, Rasha Khaddaj, Pablo Campomanes, Abdou Rachid Thiam, Roger Schneiter, Stefano Vanni
Pre-existing bilayer stresses modulate triglyceride accumulation in the ER versus lipid droplets. eLife 10 (2021)
Pablo Campomanes, Stefano Vanni
Protonation Equilibrium in the Active Site of the Photoactive Yellow Protein. Molecules (Basel, Switzerland) 26 (7) (2021)
Marie-Isabel Aguilar, Kareem Al Nahas, Francisco N Barrera, Patricia Bassereau, Burkhard Bechinger, Izabella Brand, Amitabha Chattopadhyay, Ronald J Clarke, William F DeGrado, Evelyne Deplazes, Marcus Fletcher, Franca Fraternali, Patrick Fuchs, Ana J Garcia-Saez, Robert Gilbert, Bart W Hoogenboom, Zack Jarin, Paul O'Shea, Georg Pabst, Sreetama Pal, John M Sanderson, John M Seddon, Durba Sengupta, David P Siegel, Anand Srivastava, D Peter Tieleman, Madhusmita Tripathy, Johanna Utterström, Robert Vácha, Stefano Vanni, Gregory A Voth
Theoretical and experimental comparisons of simple peptide-membrane systems; towards defining the reaction space: general discussion. Faraday discussions 232 (0) (2021)
Sriraksha Srinivasan, Valeria Zoni, Stefano Vanni
Estimating the accuracy of the MARTINI model towards the investigation of peripheral protein-membrane interactions. Faraday discussions (2021)
Valeria Zoni, Rasha Khaddaj, Ivan Lukmantara, Wataru Shinoda, Hongyuan Yang, Roger Schneiter, Stefano Vanni
Seipin accumulates and traps diacylglycerols and triglycerides in its ring-like structure. Proceedings of the National Academy of Sciences of the United States of America 118 (10) (2021)
Valeria Zoni, Pablo Campomanes, Stefano Vanni
Investigating the structural properties of hydrophobic solvent-rich lipid bilayers. Soft matter 17 (21) (2021)
Vikram Reddy Ardham, Valeria Zoni, Sylvain Adamowicz, Pablo Campomanes, Stefano Vanni
Accurate Estimation of Membrane Capacitance from Atomistic Molecular Dynamics Simulations of Zwitterionic Lipid Bilayers. The journal of physical chemistry. B 124 (38) (2020)
Ana West, Valeria Zoni, Walter E Teague, Alison N Leonard, Stefano Vanni, Klaus Gawrisch, Stephanie A Tristram-Nagle, Jonathan N Sachs, Jeffery B Klauda
How Do Ethanolamine Plasmalogens Contribute to Order and Structure of Neurological Membranes? The journal of physical chemistry. B 124 (5) (2020)
Sofia Rodriguez-Gallardo, Kazuo Kurokawa, Susana Sabido-Bozo, Alejandro Cortes-Gomez, Atsuko Ikeda, Valeria Zoni, Auxiliadora Aguilera-Romero, Ana Maria Perez-Linero, Sergio Lopez-Martín, Miho Waga, Misako Araki, Miyako Nakano, Howard Riezman, Kouichi Funato, Stefano Vanni, Akihiko Nakano, Manuel Muñiz
Ceramide chain length-dependent protein sorting into selective endoplasmic reticulum exit sites. Science advances 6 (50) (2020)
Stefano Vanni, Laura Riccardi, Giulia Palermo, Marco De Vivo
Structure and Dynamics of the Acyl Chains in the Membrane Trafficking and Enzymatic Processing of Lipids. Accounts of chemical research 52 (11) (2019)
Maud Magdeleine, Romain Gautier, Pierre Gounon, Hélène Barelli, Stefano Vanni, Bruno Antonny
A filter at the entrance of the Golgi that selects vesicles according to size and bulk lipid composition. eLife 5 (2016)