Adam K Sieradzan (A K Sieradzan, Adam Sieradzan)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 23

Top Topics

Venous Thromboembolism

Single Molecule

Molecular Dynamics

Top Venues

The journal of physical chemistry. B

Molecules (Basel, Switzerland)

Journal of chemical theory and computation

International journal of molecular sciences

This page only lists publications with an associated author ORCID identifier.

Publications

Natalia H Rogoża, Magdalena A Mozolewska, Pawel Krupa, Adam K Sieradzan
Integrating Explicit and Implicit Fullerene Models into UNRES Force Field for Protein Interaction Studies. Molecules (Basel, Switzerland) 29 (9) (2024)
Piotr Ciura, Pamela Smardz, Marta Spodzieja, Adam K Sieradzan, Pawel Krupa
Multilayered Computational Framework for Designing Peptide Inhibitors of HVEM-LIGHT Interaction. The journal of physical chemistry. B 128 (28) (2024)
Piotr Ciura, Pamela Smardz, Marta Spodzieja, Adam K Sieradzan, Pawel Krupa
Multilayered Computational Framework for Designing Peptide Inhibitors of HVEM-LIGHT Interaction. The journal of physical chemistry. B 128 (28) (2024)
Natalia H Rogoża, Magdalena A Mozolewska, Pawel Krupa, Adam K Sieradzan
Integrating Explicit and Implicit Fullerene Models into UNRES Force Field for Protein Interaction Studies. Molecules (Basel, Switzerland) 29 (9) (2024)
Piotr Ciura, Pamela Smardz, Marta Spodzieja, Adam K Sieradzan, Pawel Krupa
Multilayered Computational Framework for Designing Peptide Inhibitors of HVEM-LIGHT Interaction. The journal of physical chemistry. B 128 (28) (2024)
Piotr Ciura, Pamela Smardz, Marta Spodzieja, Adam K Sieradzan, Pawel Krupa
Multilayered Computational Framework for Designing Peptide Inhibitors of HVEM-LIGHT Interaction. The journal of physical chemistry. B (2024)
Piotr Ciura, Pamela Smardz, Marta Spodzieja, Adam K Sieradzan, Pawel Krupa
Multilayered Computational Framework for Designing Peptide Inhibitors of HVEM-LIGHT Interaction. The journal of physical chemistry. B 128 (28) (2024)
Ł J Dziadek, Adam K Sieradzan, Cezary Czaplewski, M Zalewski, F Banaś, M Toczek, W Nisterenko, S Grudinin, Jozef Adam Liwo, Artur Giełdoń
Assessment of Four Theoretical Approaches to Predict Protein Flexibility in the Crystal Phase and Solution. Journal of chemical theory and computation (2024)
Annemarie Danielsson, Sergey A Samsonov, Jozef Adam Liwo, Adam K Sieradzan
Extension of the SUGRES-1P Coarse-Grained Model of Polysaccharides to Heparin. Journal of chemical theory and computation (2023)
Agnieszka G Lipska, Adam K Sieradzan, Cezary Czaplewski, Andrea D Lipińska, Krzysztof M Ocetkiewicz, Jerzy Proficz, Paweł Czarnul, Henryk Krawczyk, Jozef Adam Liwo
Long-time scale simulations of virus-like particles from three human-norovirus strains. Journal of computational chemistry (2023)
Luís Borges-Araújo, Ilias Patmanidis, Akhil P Singh, Lucianna H S Santos, Adam K Sieradzan, Stefano Vanni, Cezary Czaplewski, Sergio Pantano, Wataru Shinoda, Luca Monticelli, Jozef Adam Liwo, Siewert-Jan Marrink, Paulo Cesar Telles de Souza
Pragmatic Coarse-Graining of Proteins: Models and Applications. Journal of chemical theory and computation (2023)
Agnieszka G Lipska, Adam K Sieradzan, Sümeyye Atmaca, Cezary Czaplewski, Jozef Adam Liwo
Toward Consistent Physics-Based Modeling of Local Backbone Structures and Chirality Change of Proteins in Coarse-Grained Approaches. The journal of physical chemistry letters (2023)
Agnieszka G Lipska, Anna M Antoniak, Patryk Wesołowski, Alan Warszawski, Sergey A Samsonov, Adam K Sieradzan
Coarse-grained modeling of the calcium, sodium, magnesium and potassium cations interacting with proteins. Journal of molecular modeling 28 (7) (2022)
Iga Biskupek, Adam K Sieradzan, Cezary Czaplewski, Jozef Adam Liwo, Adam Lesner, Artur Giełdoń
Theoretical Investigation of the Coronavirus SARS-CoV-2 (COVID-19) Infection Mechanism and Selectivity. Molecules (Basel, Switzerland) 27 (7) (2022)
Pamela Smardz, Adam K Sieradzan, Pawel Krupa
Mechanical Stability of Ribonuclease A Heavily Depends on the Redox Environment. The journal of physical chemistry. B 126 (33) (2022)
Adam K Sieradzan, Jordi Sans-Duñó, Emilia A Lubecka, Cezary Czaplewski, Agnieszka G Lipska, Henryk Leszczyński, Krzysztof M Ocetkiewicz, Jerzy Proficz, Paweł Czarnul, Henryk Krawczyk, Jozef Adam Liwo
Optimization of parallel implementation of UNRES package for coarse-grained simulations to treat large proteins. Journal of computational chemistry (2022)
Jozef Adam Liwo, Cezary Czaplewski, Adam K Sieradzan, Agnieszka G Lipska, Sergey A Samsonov, Rajesh K Murarka
Theory and Practice of Coarse-Grained Molecular Dynamics of Biologically Important Systems. Biomolecules 11 (9) (2021)
Agnieszka S Karczyńska, Karolina Ziȩba, Urszula Uciechowska, Magdalena A Mozolewska, Pawel Krupa, Emilia A Lubecka, Agnieszka G Lipska, Celina Sikorska, Sergey A Samsonov, Adam K Sieradzan, Artur Giełdoń, Jozef Adam Liwo, Rafał Ślusarz, Magdalena Ślusarz, Jooyoung Lee, Keehyoung Joo, Cezary Czaplewski
Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13. Journal of chemical information and modeling 60 (3) (2020)
Magdalena Chrabąszczewska, Adam K Sieradzan, Sylwia Rodziewicz-Motowidło, Anders Grubb, Christopher M Dobson, Janet R Kumita, Maciej Kozak
Structural Characterization of Covalently Stabilized Human Cystatin C Oligomers. International journal of molecular sciences 21 (16) (2020)
Marta Spodzieja, Katarzyna Kuncewicz, Adam K Sieradzan, Agnieszka Karczyńska, Justyna Iwaszkiewicz, Valérie Cesson, Katarzyna Węgrzyn, Igor Zhukov, Martyna Maszota-Zieleniak, Olivier Michielin, Daniel E Speiser, Vincent Zoete, Laurent Derré, Sylwia Rodziewicz-Motowidło
Disulfide-Linked Peptides for Blocking BTLA/HVEM Binding. International journal of molecular sciences 21 (2) (2020)
Karolina Ziȩba, Magdalena Ślusarz, Rafał Ślusarz, Adam Liwo, Cezary Czaplewski, Adam K Sieradzan
Extension of the UNRES Coarse-Grained Force Field to Membrane Proteins in the Lipid Bilayer. The journal of physical chemistry. B 123 (37) (2019)
Gergely Kohut, Adam K Sieradzan, Ferenc Zsila, Tünde Juhász, Szilvia Bősze, Adam Liwo, Sergey A Samsonov, Tamás Beke-Somfai
The molecular mechanism of structural changes in the antimicrobial peptide CM15 upon complex formation with drug molecule suramin: a computational analysis. Physical chemistry chemical physics : PCCP 21 (20) (2019)
Adam K Sieradzan, Paweł Krupa, David J Wales
What Makes Telomeres Unique? The journal of physical chemistry. B 121 (10) (2017)