Steven E Brenner

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 27

Top Venues

Human mutation

medRxiv : the preprint server for health sciences

bioRxiv : the preprint server for biology

NPJ genomic medicine

Lawrence Berkeley National Laboratory

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Lawrence Berkeley National Laboratory

United States

Faculty Scientist

University of California San Francisco

United States

Adjunct Professor :: Bioengineering & Therapeutic Sciences

University of California Berkeley Jan 01 2000

United States

Professor

Publications

Yu-Jen Lin, Arul S Menon, Zhiqiang Hu, Steven E Brenner
Variant Impact Predictor database (VIPdb), version 2: trends from three decades of genetic variant impact predictors. Human genomics 18 (1) (2024)
Sarah L Stenton, Vikas Pejaver, Timothy Bergquist, Leslie G Biesecker, Alicia B Byrne, Emily A W Nadeau, Marc S Greenblatt, Steven M Harrison, Sean V Tavtigian, Predrag Radivojac, Steven E Brenner, Anne H O'Donnell-Luria
Assessment of the evidence yield for the calibrated PP3/BP4 computational recommendations. medRxiv : the preprint server for health sciences (2024)
Sarah L Stenton, Vikas Pejaver, Timothy Bergquist, Leslie G Biesecker, Alicia B Byrne, Emily A W Nadeau, Marc S Greenblatt, Steven M Harrison, Sean V Tavtigian, Predrag Radivojac, Steven E Brenner, Anne H O'Donnell-Luria
Assessment of the evidence yield for the calibrated PP3/BP4 computational recommendations. medRxiv : the preprint server for health sciences (2024)
Yu-Jen Lin, Arul S Menon, Zhiqiang Hu, Steven E Brenner
Variant Impact Predictor database (VIPdb), version 2: Trends from 25 years of genetic variant impact predictors. bioRxiv : the preprint server for biology (2024)
Sarah L Stenton, Vikas Pejaver, Timothy Bergquist, Leslie G Biesecker, Alicia B Byrne, Emily A W Nadeau, Marc S Greenblatt, Steven M Harrison, Sean V Tavtigian, Predrag Radivojac, Steven E Brenner, Anne H O'Donnell-Luria
Assessment of the evidence yield for the calibrated PP3/BP4 computational recommendations. medRxiv : the preprint server for health sciences (2024)
Yu-Jen Lin, Arul S Menon, Zhiqiang Hu, Steven E Brenner
Variant Impact Predictor database (VIPdb), version 2: Trends from 25 years of genetic variant impact predictors. bioRxiv : the preprint server for biology (2024)
Yu-Jen Lin, Arul S Menon, Zhiqiang Hu, Steven E Brenner
Variant Impact Predictor database (VIPdb), version 2: trends from three decades of genetic variant impact predictors. Human genomics 18 (1) (2024)
Sarah L Stenton, Vikas Pejaver, Timothy Bergquist, Leslie G Biesecker, Alicia B Byrne, Emily A W Nadeau, Marc S Greenblatt, Steven M Harrison, Sean V Tavtigian, Predrag Radivojac, Steven E Brenner, Anne H O'Donnell-Luria, null null
Assessment of the evidence yield for the calibrated PP3/BP4 computational recommendations. medRxiv : the preprint server for health sciences (2024)
Yu-Jen Lin, Arul S Menon, Zhiqiang Hu, Steven E Brenner
Variant Impact Predictor database (VIPdb), version 2: Trends from 25 years of genetic variant impact predictors. bioRxiv : the preprint server for biology (2024)
Carl L McCombe, Ann-Maree Catanzariti, Julian R Greenwood, Anna M Desai, Megan A Outram, Daniel S Yu, Daniel J Ericsson, Steven E Brenner, Peter N Dodds, Bostjan Kobe, David A Jones, Simon J Williams
A rust-fungus Nudix hydrolase effector decaps mRNA in vitro and interferes with plant immune pathways. The New phytologist (2023)
Andrew G Sharo, Yangyun Zou, Aashish N Adhikari, Steven E Brenner
ClinVar and HGMD genomic variant classification accuracy has improved over time, as measured by implied disease burden. Genome medicine 15 (1) (2023)
Sarah L Stenton, Melanie O'Leary, Gabrielle T Lemire, Grace E VanNoy, Stephanie DiTroia, Vijay S Ganesh, Emily Groopman, Emily O'Heir, Brian Mangilog, Ikeoluwa Osei-Owusu, Lynn S Pais, Jillian G Serrano, Moriel H Singer-Berk, Ben Weisburd, Michael Wilson, Christina Austin-Tse, Marwa Abdelhakim, Azza Thamer Althagafi, Giulia Babbi, Riccardo Bellazzi, Samuele Bovo, Maria Giulia Carta, Rita Casadio, Pieter-Jan Coenen, Federica De Paoli, Matteo Floris, Manavalan Gajapathy, Hoehndorf Robert, Julius O B Jacobsen, Thomas Joseph, Akash Kamandula, Panagiostis Katsonis, Cyrielle Kint, Olivier Lichtarge, Ivan Limongelli, Yulan Lu, Paolo Magni, Tarun Karthik Kumar Mamidi, Pier Luigi Martelli, Marta Mulargia, Giovanna Nicora, Keith Nykamp, Vikas Pejaver, Yisu Peng, Thi Hong Cam Pham, Maurizio S Podda, Aditya Rao, Ettore Rizzo, Vangala G Saipradeep, Castrense Savojardo, Peter Schols, Yang Shen, Naveen Sivadasan, Damian Smedley, Dorian Soru, Rajgopal Srinivasan, Yuanfei Sun, Uma Sunderam, Wuwei Tan, Naina Tiwari, Xiao Wang, Yaqiong Wang, Amanda Williams, Elizabeth A Worthey, Rujie Yin, Yuning You, Daniel Zeiberg, Susanna Zucca, Constantina Bakolitsa, Steven E Brenner, Stephanie Malia Fullerton, Predrag Radivojac, Michael J Bamshad, Anne H O'Donnell-Luria
Critical assessment of variant prioritization methods for rare disease diagnosis within the Rare Genomes Project. medRxiv : the preprint server for health sciences (2023)
Joseph T C Shieh, Monica Penon-Portmann, Karen H Y Wong, Michal Levy-Sakin, Michelle Verghese, Anne M Slavotinek, Renata C Gallagher, Bryce A Mendelsohn, Jessica Tenney, Daniah Beleford, Hazel Perry, Stephen K Chow, Andrew G Sharo, Steven E Brenner, Zhongxia Qi, Jingwei Yu, Ophir D Klein, David Martin, Pui-Yan Kwok, Dario Boffelli
Publisher Correction: Application of full-genome analysis to diagnose rare monogenic disorders. NPJ genomic medicine 6 (1) (2021)
Joseph T C Shieh, Monica Penon-Portmann, Karen H Y Wong, Michal Levy-Sakin, Michelle Verghese, Anne M Slavotinek, Renata C Gallagher, Bryce A Mendelsohn, Jessica Tenney, Daniah Beleford, Hazel Perry, Stephen K Chow, Andrew G Sharo, Steven E Brenner, Zhongxia Qi, Jingwei Yu, Ophir D Klein, David Martin, Pui-Yan Kwok, Dario Boffelli
Application of full-genome analysis to diagnose rare monogenic disorders. NPJ genomic medicine 6 (1) (2021)
John-Marc Chandonia, Lindsey Guan, Shiangyi Lin, Changhua Yu, Naomi K Fox, Steven E Brenner
SCOPe: improvements to the structural classification of proteins - extended database to facilitate variant interpretation and machine learning. Nucleic acids research (2021)
Wyatt T Clark, Laura Kasak, Constantina Bakolitsa, Zhiqiang Hu, Gaia Andreoletti, Giulia Babbi, Yana Bromberg, Rita Casadio, Roland L Dunbrack, Lukas Folkman, Colby T Ford, David Jones, Panagiostis Katsonis, Kunal Kundu, Olivier Lichtarge, Pier Luigi Martelli, Sean D Mooney, Conor Nodzak, Lipika R Pal, Predrag Radivojac, Castrense Savojardo, Xinghua Shi, Yaoqi Zhou, Aneeta Uppal, Qifang Xu, Yizhou Yin, Vikas Pejaver, Meng Wang, Liping Wei, John Moult, Guoying Karen Yu, Steven E Brenner, Jonathan H LeBowitz
Assessment of predicted enzymatic activity of α-N-acetylglucosaminidase variants of unknown significance for CAGI 2016. Human mutation 40 (9) (2020)
Aashish N Adhikari, Renata C Gallagher, Yaqiong Wang, Robert J Currier, George Amatuni, Laia Bassaganyas, Flavia Chen, Kunal Kundu, Mark Kvale, Sean D Mooney, Robert L Nussbaum, Savanna S Randi, Jeremy Sanford, Joseph T Shieh, Rajgopal Srinivasan, Uma Sunderam, Hao Tang, Dedeepya Vaka, Yangyun Zou, Barbara Ann Koenig, Pui-Yan Kwok, Neil Risch, Jennifer M Puck, Steven E Brenner
The role of exome sequencing in newborn screening for inborn errors of metabolism. Nature medicine 26 (9) (2020)
Alexander Miguel Monzon, Marco Carraro, Luigi Chiricosta, Francesco Reggiani, James Han, Kivilcim Ozturk, Yanran Wang, Maximilian Miller, Yana Bromberg, Emidio Capriotti, Castrense Savojardo, Giulia Babbi, Pier L Martelli, Rita Casadio, Panagiostis Katsonis, Olivier Lichtarge, Hannah Carter, Maria Kousi, Nicholas Katsanis, Gaia Andreoletti, John Moult, Steven E Brenner, Carlo Ferrari, Emanuela Leonardi, Silvio C E Tosatto
Performance of computational methods for the evaluation of pericentriolar material 1 missense variants in CAGI-5. Human mutation 40 (9) (2019)
Zhiqiang Hu, Changhua Yu, Mabel Furutsuki, Gaia Andreoletti, Melissa Ly, Roger Hoskins, Aashish N Adhikari, Steven E Brenner
VIPdb, a genetic Variant Impact Predictor Database. Human mutation 40 (9) (2019)
Marco Carraro, Alexander Miguel Monzon, Luigi Chiricosta, Francesco Reggiani, Maria Cristina Aspromonte, Mariagrazia Bellini, Kymberleigh Pagel, Yuxiang Jiang, Predrag Radivojac, Kunal Kundu, Lipika R Pal, Yizhou Yin, Ivan Limongelli, Gaia Andreoletti, John Moult, Stephen J Wilson, Panagiostis Katsonis, Olivier Lichtarge, Jingqi Chen, Yaqiong Wang, Zhiqiang Hu, Steven E Brenner, Carlo Ferrari, Alessandra Murgia, Silvio C E Tosatto, Emanuela Leonardi
Assessment of patient clinical descriptions and pathogenic variants from gene panel sequences in the CAGI-5 intellectual disability challenge. Human mutation 40 (9) (2019)
Alin Voskanian-Kordi, Panagiostis Katsonis, Olivier Lichtarge, Vikas Pejaver, Predrag Radivojac, Sean D Mooney, Emidio Capriotti, Yana Bromberg, Yanran Wang, Maximilian Miller, Pier Luigi Martelli, Castrense Savojardo, Giulia Babbi, Rita Casadio, Yue Cao, Yuanfei Sun, Yang Shen, Aditi Garg, Debnath Pal, Yao Yu, Chad D Huff, Sean V Tavtigian, Erin Young, Susan L Neuhausen, Elad Ziv, Lipika R Pal, Gaia Andreoletti, Steven E Brenner, Maricel G Kann
Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer. Human mutation 40 (9) (2019)
Gaia Andreoletti, Lipika R Pal, John Moult, Steven E Brenner
Reports from the fifth edition of CAGI: The Critical Assessment of Genome Interpretation. Human mutation 40 (9) (2019)
Castrense Savojardo, Maria Petrosino, Giulia Babbi, Samuele Bovo, Carles Corbi-Verge, Rita Casadio, Piero Fariselli, Lukas Folkman, Aditi Garg, Mostafa Karimi, Panagiostis Katsonis, Philip M Kim, Olivier Lichtarge, Pier Luigi Martelli, Alessandra Pasquo, Debnath Pal, Yang Shen, Alexey V Strokach, Paola Turina, Yaoqi Zhou, Gaia Andreoletti, Steven E Brenner, Roberta Chiaraluce, Valerio Consalvi, Emidio Capriotti
Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge. Human mutation 40 (9) (2019)
Gregory McInnes, Roxana Daneshjou, Panagiostis Katsonis, Olivier Lichtarge, Rajgopal Srinivasan, Sadhna Rana, Predrag Radivojac, Sean D Mooney, Kymberleigh A Pagel, Moses Stamboulian, Yuxiang Jiang, Emidio Capriotti, Yanran Wang, Yana Bromberg, Samuele Bovo, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Lipika R Pal, John Moult, Steven E Brenner, Russ Altman
Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges. Human mutation 40 (9) (2019)
Laura Kasak, Constantina Bakolitsa, Zhiqiang Hu, Changhua Yu, Jasper Rine, Dago F Dimster-Denk, Gaurav Pandey, Greet De Baets, Yana Bromberg, Chen Cao, Emidio Capriotti, Rita Casadio, Joost Van Durme, Manuel Giollo, Rachel Karchin, Panagiostis Katsonis, Emanuela Leonardi, Olivier Lichtarge, Pier Luigi Martelli, David Masica, Sean D Mooney, Ayodeji Olatubosun, Predrag Radivojac, Frederic Rousseau, Lipika R Pal, Castrense Savojardo, Joost Schymkowitz, Janita Thusberg, Silvio C E Tosatto, Mauno Vihinen, Jouni Väliaho, Susanna Repo, John Moult, Steven E Brenner, Iddo Friedberg
Assessing computational predictions of the phenotypic effect of cystathionine-beta-synthase variants. Human mutation 40 (9) (2019)
Laura Kasak, Jesse M Hunter, Rupa Udani, Constantina Bakolitsa, Zhiqiang Hu, Aashish N Adhikari, Giulia Babbi, Rita Casadio, Julian Gough, Rafael F Guerrero, Yuxiang Jiang, Thomas Joseph, Panagiostis Katsonis, Sujatha Kotte, Kunal Kundu, Olivier Lichtarge, Pier Luigi Martelli, Sean D Mooney, John Moult, Lipika R Pal, Jennifer Poitras, Predrag Radivojac, Aditya Rao, Naveen Sivadasan, Uma Sunderam, V G Saipradeep, Yizhou Yin, Jan Zaucha, Steven E Brenner, M Stephen Meyn
CAGI SickKids challenges: Assessment of phenotype and variant predictions derived from clinical and genomic data of children with undiagnosed diseases. Human mutation 40 (9) (2019)
Roger A Hoskins, Susanna Repo, Daniel Barsky, Gaia Andreoletti, John Moult, Steven E Brenner
Reports from CAGI: The Critical Assessment of Genome Interpretation. Human mutation 38 (9) (2018)

Steven E Brenner.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Steven E Brenner