Hoehndorf Robert (Robert Hoehndorf, R Hoehndorf)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 42

Top Venues

Bioinformatics (Oxford, England)

Scientific data

Journal of biomedical semantics

Scientific reports

King Abdullah University of Science and Technology

Universität Leipzig (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

King Abdullah University of Science and Technology Jul 01 2020

Saudi Arabia

Associate Professor :: Computer, Electrical and Mathematical Sciences & Engineering Division

King Abdullah University of Science and Technology (KAUST) Sep 29 2014

Saudi Arabia

Assistant Professor, Computer Science :: Computer, Electrical and Mathematical Sciences and Engineering

King Abdullah University of Science and Technology Sep 29 2014 - Jun 30 2020

Saudi Arabia

Assistant Professor :: Computer, Electrical and Mathematical Sciences & Engineering Division

Aberystwyth University Jul 01 2013 - Aug 31 2014

United Kingdom

Research Fellow :: Computer Science

University of Cambridge Jun 01 2012 - Jul 01 2013

United Kingdom

Research Associate :: Physiology, Development and Neuroscience

University of Cambridge Jun 29 2010 - May 31 2012

United Kingdom

Research Associate :: Genetics

European Bioinformatics Institute Dec 01 2009 - May 01 2010

United Kingdom

Postdoctoral Fellow :: Text Mining

Max Planck Institute for Evolutionary Anthropology Jan 07 2009 - Oct 31 2009

Germany

Postdoctoral researcher :: Evolutionary Genetrics

Education History

Universität Leipzig Oct 01 2005 - Jun 29 2009

Germany

PHD :: Computer Science

Publications

Lars Vogt, Tobias Kuhn, Hoehndorf Robert
Semantic units: organizing knowledge graphs into semantically meaningful units of representation. Journal of biomedical semantics 15 (1) (2024)
Azza Thamer Althagafi, Fernando Zhapa-Camacho, Hoehndorf Robert
Prioritizing genomic variants through neuro-symbolic, knowledge-enhanced learning. Bioinformatics (Oxford, England) 40 (5) (2024)
Fernando Zhapa-Camacho, Zhenwei Tang, Maxat Kulmanov, Hoehndorf Robert
Predicting protein functions using positive-unlabeled ranking with ontology-based priors. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Fernando Zhapa-Camacho, Zhenwei Tang, Maxat Kulmanov, Hoehndorf Robert
Predicting protein functions using positive-unlabeled ranking with ontology-based priors. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Tiffany J Callahan, Ignacio J Tripodi, Adrianne L Stefanski, Luca Cappelletti, Sanya B Taneja, Jordan M Wyrwa, Elena Casiraghi, Nicolas A Matentzoglu, Justin Reese, Jonathan C Silverstein, Charles Tapley Hoyt, Richard D Boyce, Scott A Malec, Deepak R Unni, Marcin P Joachimiak, Peter Nick Robinson, Christopher J Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A Gillenwater, Brook Santangelo, Nicole A Vasilevsky, Hoehndorf Robert, Tellen D Bennett, Patrick B Ryan, George Hripcsak, Michael G Kahn, Michael Bada, William A Baumgartner, Lawrence E Hunter
An open source knowledge graph ecosystem for the life sciences. Scientific data 11 (1) (2024)
Tiffany J Callahan, Ignacio J Tripodi, Adrianne L Stefanski, Luca Cappelletti, Sanya B Taneja, Jordan M Wyrwa, Elena Casiraghi, Nicolas A Matentzoglu, Justin Reese, Jonathan C Silverstein, Charles Tapley Hoyt, Richard D Boyce, Scott A Malec, Deepak R Unni, Marcin P Joachimiak, Peter Nick Robinson, Christopher J Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A Gillenwater, Brook Santangelo, Nicole A Vasilevsky, Hoehndorf Robert, Tellen D Bennett, Patrick B Ryan, George Hripcsak, Michael G Kahn, Michael Bada, William A Baumgartner, Lawrence E Hunter
An open source knowledge graph ecosystem for the life sciences. Scientific data 11 (1) (2024)
Tiffany J Callahan, Ignacio J Tripodi, Adrianne L Stefanski, Luca Cappelletti, Sanya B Taneja, Jordan M Wyrwa, Elena Casiraghi, Nicolas A Matentzoglu, Justin Reese, Jonathan C Silverstein, Charles Tapley Hoyt, Richard D Boyce, Scott A Malec, Deepak R Unni, Marcin P Joachimiak, Peter Nick Robinson, Christopher J Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A Gillenwater, Brook Santangelo, Nicole A Vasilevsky, Hoehndorf Robert, Tellen D Bennett, Patrick B Ryan, George Hripcsak, Michael G Kahn, Michael Bada, William A Baumgartner, Lawrence E Hunter
An open source knowledge graph ecosystem for the life sciences. Scientific data 11 (1) (2024)
Fernando Zhapa-Camacho, Zhenwei Tang, Maxat Kulmanov, Hoehndorf Robert
Predicting protein functions using positive-unlabeled ranking with ontology-based priors. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Tiffany J Callahan, Ignacio J Tripodi, Adrianne L Stefanski, Luca Cappelletti, Sanya B Taneja, Jordan M Wyrwa, Elena Casiraghi, Nicolas A Matentzoglu, Justin Reese, Jonathan C Silverstein, Charles Tapley Hoyt, Richard D Boyce, Scott A Malec, Deepak R Unni, Marcin P Joachimiak, Peter Nick Robinson, Christopher J Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A Gillenwater, Brook Santangelo, Nicole A Vasilevsky, Hoehndorf Robert, Tellen D Bennett, Patrick B Ryan, George Hripcsak, Michael G Kahn, Michael Bada, William A Baumgartner, Lawrence E Hunter
An open source knowledge graph ecosystem for the life sciences. Scientific data 11 (1) (2024)
Tiffany J Callahan, Ignacio J Tripodi, Adrianne L Stefanski, Luca Cappelletti, Sanya B Taneja, Jordan M Wyrwa, Elena Casiraghi, Nicolas A Matentzoglu, Justin Reese, Jonathan C Silverstein, Charles Tapley Hoyt, Richard D Boyce, Scott A Malec, Deepak R Unni, Marcin P Joachimiak, Peter Nick Robinson, Christopher J Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A Gillenwater, Brook Santangelo, Nicole A Vasilevsky, Hoehndorf Robert, Tellen D Bennett, Patrick B Ryan, George Hripcsak, Michael G Kahn, Michael Bada, William A Baumgartner, Lawrence E Hunter
An open source knowledge graph ecosystem for the life sciences. Scientific data 11 (1) (2024)
Tiffany J Callahan, Ignacio J Tripodi, Adrianne L Stefanski, Luca Cappelletti, Sanya B Taneja, Jordan M Wyrwa, Elena Casiraghi, Nicolas A Matentzoglu, Justin Reese, Jonathan C Silverstein, Charles Tapley Hoyt, Richard D Boyce, Scott A Malec, Deepak R Unni, Marcin P Joachimiak, Peter Nick Robinson, Christopher J Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A Gillenwater, Brook Santangelo, Nicole A Vasilevsky, Hoehndorf Robert, Tellen D Bennett, Patrick B Ryan, George Hripcsak, Michael G Kahn, Michael Bada, William A Baumgartner, Lawrence E Hunter
An open source knowledge graph ecosystem for the life sciences. Scientific data 11 (1) (2024)
Azza Thamer Althagafi, Fernando Zhapa-Camacho, Hoehndorf Robert
Prioritizing genomic variants through neuro-symbolic, knowledge-enhanced learning. Bioinformatics (Oxford, England) 40 (5) (2024)
Lars Vogt, Tobias Kuhn, Hoehndorf Robert
Semantic units: organizing knowledge graphs into semantically meaningful units of representation. Journal of biomedical semantics 15 (1) (2024)
Lars Vogt, Tobias Kuhn, Hoehndorf Robert
Semantic units: organizing knowledge graphs into semantically meaningful units of representation. Journal of biomedical semantics 15 (1) (2024)
Tiffany J Callahan, Ignacio J Tripodi, Adrianne L Stefanski, Luca Cappelletti, Sanya B Taneja, Jordan M Wyrwa, Elena Casiraghi, Nicolas A Matentzoglu, Justin Reese, Jonathan C Silverstein, Charles Tapley Hoyt, Richard D Boyce, Scott A Malec, Deepak R Unni, Marcin P Joachimiak, Peter Nick Robinson, Christopher J Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A Gillenwater, Brook Santangelo, Nicole A Vasilevsky, Hoehndorf Robert, Tellen D Bennett, Patrick B Ryan, George Hripcsak, Michael G Kahn, Michael Bada, William A Baumgartner, Lawrence E Hunter
An open source knowledge graph ecosystem for the life sciences. Scientific data 11 (1) (2024)
Tiffany J Callahan, Ignacio J Tripodi, Adrianne L Stefanski, Luca Cappelletti, Sanya B Taneja, Jordan M Wyrwa, Elena Casiraghi, Nicolas A Matentzoglu, Justin Reese, Jonathan C Silverstein, Charles Tapley Hoyt, Richard D Boyce, Scott A Malec, Deepak R Unni, Marcin P Joachimiak, Peter Nick Robinson, Christopher J Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A Gillenwater, Brook Santangelo, Nicole A Vasilevsky, Hoehndorf Robert, Tellen D Bennett, Patrick B Ryan, George Hripcsak, Michael G Kahn, Michael Bada, William A Baumgartner, Lawrence E Hunter
An open source knowledge graph ecosystem for the life sciences. Scientific data 11 (1) (2024)
Lars Vogt, Tobias Kuhn, Hoehndorf Robert
Semantic units: organizing knowledge graphs into semantically meaningful units of representation. Journal of biomedical semantics 15 (1) (2024)
Fernando Zhapa-Camacho, Maxat Kulmanov, Hoehndorf Robert
mOWL: Python library for machine learning with biomedical ontologies. Bioinformatics (Oxford, England) 39 (1) (2023)
Șenay Kafkas, Marwa Abdelhakim, Mahmut Uludag, Azza Althagafi, Malak Alghamdi, Hoehndorf Robert
Starvar: symptom-based tool for automatic ranking of variants using evidence from literature and genomes. BMC bioinformatics 24 (1) (2023)
Sarah L Stenton, Melanie O'Leary, Gabrielle T Lemire, Grace E VanNoy, Stephanie DiTroia, Vijay S Ganesh, Emily Groopman, Emily O'Heir, Brian Mangilog, Ikeoluwa Osei-Owusu, Lynn S Pais, Jillian G Serrano, Moriel H Singer-Berk, Ben Weisburd, Michael Wilson, Christina Austin-Tse, Marwa Abdelhakim, Azza Thamer Althagafi, Giulia Babbi, Riccardo Bellazzi, Samuele Bovo, Maria Giulia Carta, Rita Casadio, Pieter-Jan Coenen, Federica De Paoli, Matteo Floris, Manavalan Gajapathy, Hoehndorf Robert, Julius O B Jacobsen, Thomas Joseph, Akash Kamandula, Panagiostis Katsonis, Cyrielle Kint, Olivier Lichtarge, Ivan Limongelli, Yulan Lu, Paolo Magni, Tarun Karthik Kumar Mamidi, Pier Luigi Martelli, Marta Mulargia, Giovanna Nicora, Keith Nykamp, Vikas Pejaver, Yisu Peng, Thi Hong Cam Pham, Maurizio S Podda, Aditya Rao, Ettore Rizzo, Vangala G Saipradeep, Castrense Savojardo, Peter Schols, Yang Shen, Naveen Sivadasan, Damian Smedley, Dorian Soru, Rajgopal Srinivasan, Yuanfei Sun, Uma Sunderam, Wuwei Tan, Naina Tiwari, Xiao Wang, Yaqiong Wang, Amanda Williams, Elizabeth A Worthey, Rujie Yin, Yuning You, Daniel Zeiberg, Susanna Zucca, Constantina Bakolitsa, Steven E Brenner, Stephanie Malia Fullerton, Predrag Radivojac, Michael J Bamshad, Anne H O'Donnell-Luria
Critical assessment of variant prioritization methods for rare disease diagnosis within the Rare Genomes Project. medRxiv : the preprint server for health sciences (2023)
Fernando Zhapa-Camacho, Maxat Kulmanov, Hoehndorf Robert
mOWL: Python library for machine learning with biomedical ontologies. Bioinformatics (Oxford, England) 39 (1) (2023)
Fernando Zhapa-Camacho, Maxat Kulmanov, Hoehndorf Robert
mOWL: Python library for machine learning with biomedical ontologies. Bioinformatics (Oxford, England) 39 (1) (2023)
Maxat Kulmanov, Hoehndorf Robert
DeepGOZero: improving protein function prediction from sequence and zero-shot learning based on ontology axioms. Bioinformatics (Oxford, England) 38 (Suppl 1) (2022)
Sarah M Alghamdi, Paul N Schofield, Hoehndorf Robert
Contribution of model organism phenotypes to the computational identification of human disease genes. Disease models & mechanisms 15 (7) (2022)
Jun Chen, Azza Althagafi, Hoehndorf Robert
Predicting candidate genes from phenotypes, functions and anatomical site of expression. Bioinformatics (Oxford, England) 37 (6) (2021)
Maxat Kulmanov, Fernando Zhapa-Camacho, Hoehndorf Robert
DeepGOWeb: fast and accurate protein function prediction on the (Semantic) Web. Nucleic acids research 49 (W1) (2021)
Şenay Kafkas, Sara Althubaiti, Georgios V Gkoutos, Hoehndorf Robert, Paul N Schofield
Linking common human diseases to their phenotypes; development of a resource for human phenomics. Journal of biomedical semantics 12 (1) (2021)
Maxat Kulmanov, Hoehndorf Robert
DeepGOPlus: improved protein function prediction from sequence. Bioinformatics (Oxford, England) (2021)
Marwa Abdelhakim, Eunice McMurray, Ali Raza Syed, Senay Kafkas, Allan Anthony Kamau, Paul N Schofield, Hoehndorf Robert
DDIEM: drug database for inborn errors of metabolism. Orphanet journal of rare diseases 15 (1) (2020)
Maxat Kulmanov, Hoehndorf Robert
DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier. PLoS computational biology 16 (11) (2020)
G Othoum, S Prigent, Abderahmane Derouiche, L Shi, A Bokhari, S Alamoudi, Salim Bougouffa, Xin Gao, Hoehndorf Robert, S T Arold, T Gojobori, Heribert Hirt, Feras F Lafi, Jens B Nielsen, Vladimir B Bajic, I Mijakovic, Magbubah Essack
Comparative genomics study reveals Red Sea Bacillus with characteristics associated with potential microbial cell factories (MCFs). Scientific reports 9 (1) (2019)
Şenay Kafkas, Marwa Abdelhakim, Yasmeen Hashish, Maxat Kulmanov, Marwa Abdellatif, Paul N Schofield, Hoehndorf Robert
PathoPhenoDB, linking human pathogens to their phenotypes in support of infectious disease research. Scientific data 6 (1) (2019)
Şenay Kafkas, Hoehndorf Robert
Ontology based mining of pathogen-disease associations from literature. Journal of biomedical semantics 10 (1) (2019)
Sarah M Alghamdi, Beth A Sundberg, John P Sundberg, Paul N Schofield, Hoehndorf Robert
Quantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies. Scientific reports 9 (1) (2019)
Imane Boudellioua, Maxat Kulmanov, Paul N Schofield, Georgios V Gkoutos, Hoehndorf Robert
DeepPVP: phenotype-based prioritization of causative variants using deep learning. BMC bioinformatics 20 (1) (2019)
Sara Althubaiti, Andreas Karwath, Ashraf Dallol, Adeeb Noor, Shadi Salem Alkhayyat, Rolina Alwassia, Katsuhiko Mineta, Takashi Gojobori, Andrew D Beggs, Paul N Schofield, Georgios V Gkoutos, Hoehndorf Robert
Ontology-based prediction of cancer driver genes. Scientific reports 9 (1) (2019)
Damion M Dooley, Emma J Griffiths, Gurinder S Gosal, Pier L Buttigieg, Hoehndorf Robert, Matthew C Lange, Lynn M Schriml, Fiona S L Brinkman, William W L Hsiao
FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration. NPJ science of food 2 (2018)
Imane Boudellioua, Maxat Kulmanov, Paul N Schofield, Georgios V Gkoutos, Hoehndorf Robert
OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants. Scientific reports 8 (1) (2018)
Maxat Kulmanov, Hoehndorf Robert
Evaluating the effect of annotation size on measures of semantic similarity. Journal of biomedical semantics 8 (1) (2017)
Imane Boudellioua, Rozaimi B Mahamad Razali, Maxat Kulmanov, Yasmeen Hashish, Vladimir B Bajic, Eva Goncalves-Serra, Nadia Schoenmakers, Georgios V Gkoutos, Paul N Schofield, Hoehndorf Robert
Semantic prioritization of novel causative genomic variants. PLoS computational biology 13 (4) (2017)
Miguel Ángel Rodríguez-García, Georgios V Gkoutos, Paul N Schofield, Hoehndorf Robert
Integrating phenotype ontologies with PhenomeNET. Journal of biomedical semantics 8 (1) (2017)
Hoehndorf Robert, Mona Alshahrani, Georgios V Gkoutos, George Gosline, Quentin Groom, Thomas Hamann, Jens Kattge, Sylvia Mota de Oliveira, Marco Schmidt, Soraya Sierra, Erik Smets, Rutger A Vos, Claus Weiland
The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants. Journal of biomedical semantics 7 (1) (2016)
Assaf Gottlieb, Hoehndorf Robert, Michel Dumontier, Russ B Altman
Ranking adverse drug reactions with crowdsourcing. Journal of medical Internet research 17 (3) (2015)

Hoehndorf Robert.css-eqlu8i{font-size:small;padding-left:4px;} (Robert Hoehndorf, R Hoehndorf)

Publication Activity (10 Years)

Top Topics

Top Venues

Hoehndorf Robert (Robert Hoehndorf, R Hoehndorf)