Yana Bromberg (Y Bromberg)

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 21

Top Venues

Human mutation

Cold Spring Harbor perspectives in biology

Nucleic acids research

NAR genomics and bioinformatics

Rutgers University New Brunswick

Columbia University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Rutgers University New Brunswick Jul 01 2016

United States

Associate Professor :: Biochemistry and Microbiology

Rutgers University New Brunswick Jul 01 2010 - Jul 01 2016

United States

Assistant Professor :: Biochemistry and Microbiology

Columbia University

United States

Post-doctoral Research Scientist :: Biochemistry and Molecular Biophysics

Education History

Columbia University Oct 01 2005

United States

PHD :: Biomedical Informatics

Publications

Anowarul Kabir, Asher Moldwin, Yana Bromberg, Amarda Shehu
In the twilight zone of protein sequence homology: do protein language models learn protein structure? Bioinformatics advances 4 (1) (2024)
Yana Bromberg, R Prabakaran, Anowarul Kabir, Amarda Shehu
Variant Effect Prediction in the Age of Machine Learning. Cold Spring Harbor perspectives in biology 16 (7) (2024)
Henri C Chung, Iddo Friedberg, Yana Bromberg
Assembling bacterial puzzles: piecing together functions into microbial pathways. NAR genomics and bioinformatics 6 (3) (2024)
Yana Bromberg, R Prabakaran, Anowarul Kabir, Amarda Shehu
Variant Effect Prediction in the Age of Machine Learning. Cold Spring Harbor perspectives in biology 16 (7) (2024)
Henri C Chung, Iddo Friedberg, Yana Bromberg
Assembling bacterial puzzles: piecing together functions into microbial pathways. NAR genomics and bioinformatics 6 (3) (2024)
Yana Bromberg, R Prabakaran, Anowarul Kabir, Amarda Shehu
Variant Effect Prediction in the Age of Machine Learning. Cold Spring Harbor perspectives in biology (2024)
Anowarul Kabir, Asher Moldwin, Yana Bromberg, Amarda Shehu
In the twilight zone of protein sequence homology: do protein language models learn protein structure? Bioinformatics advances 4 (1) (2024)
Yannick Mahlich, Chengsheng Zhu, Henri Chung, Pavan K Velaga, M Clara De Paolis Kaluza, Predrag Radivojac, Iddo Friedberg, Yana Bromberg
Learning from the unknown: exploring the range of bacterial functionality. Nucleic acids research (2023)
Adrienne Hoarfrost, Ariel A Aptekmann, G Farfañuk, Yana Bromberg
Deep learning of a bacterial and archaeal universal language of life enables transfer learning and illuminates microbial dark matter. Nature communications 13 (1) (2022)
Zishuo Zeng, Yana Bromberg
Inferring Potential Cancer Driving Synonymous Variants. Genes 13 (5) (2022)
Yana Bromberg, Ariel A Aptekmann, Yannick Mahlich, Linda Cook, Stefan Senn, Maximillian Miller, Vikas Nanda, Diego U Ferreiro, Paul G Falkowski
Quantifying structural relationships of metal-binding sites suggests origins of biological electron transfer. Science advances 8 (2) (2022)
Ariel A Aptekmann, J Buongiorno, D Giovannelli, M Glamoclija, D U Ferreiro, Yana Bromberg
mebipred: identifying metal-binding potential in protein sequence. Bioinformatics (Oxford, England) 38 (14) (2022)
Yana Bromberg
Tightening the (neural) net for protein structure prediction. Nature reviews. Genetics 23 (6) (2022)
Zishuo Zeng, Ariel A Aptekmann, Yana Bromberg
Decoding the effects of synonymous variants. Nucleic acids research (2021)
Michael Bernhofer, Christian Dallago, Tim Karl, Venkata P Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, Laszlo Kajan, Sean O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost
PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic acids research 49 (W1) (2021)
Chengsheng Zhu, Maximilian Miller, Nicholas Lusskin, Benoît Bergk Pinto, Lorrie Maccario, Max Häggblom, Timothy Vogel, Catherine Larose, Yana Bromberg
Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds. MicrobiologyOpen 9 (9) (2020)
Wyatt T Clark, Laura Kasak, Constantina Bakolitsa, Zhiqiang Hu, Gaia Andreoletti, Giulia Babbi, Yana Bromberg, Rita Casadio, Roland L Dunbrack, Lukas Folkman, Colby T Ford, David Jones, Panagiostis Katsonis, Kunal Kundu, Olivier Lichtarge, Pier Luigi Martelli, Sean D Mooney, Conor Nodzak, Lipika R Pal, Predrag Radivojac, Castrense Savojardo, Xinghua Shi, Yaoqi Zhou, Aneeta Uppal, Qifang Xu, Yizhou Yin, Vikas Pejaver, Meng Wang, Liping Wei, John Moult, Guoying Karen Yu, Steven E Brenner, Jonathan H LeBowitz
Assessment of predicted enzymatic activity of α-N-acetylglucosaminidase variants of unknown significance for CAGI 2016. Human mutation 40 (9) (2020)
Maximilian Miller, Yanran Wang, Yana Bromberg
What went wrong with variant effect predictor performance for the PCM1 challenge. Human mutation 40 (9) (2019)
Vikas Pejaver, Giulia Babbi, Rita Casadio, Lukas Folkman, Panagiostis Katsonis, Kunal Kundu, Olivier Lichtarge, Pier Luigi Martelli, Maximilian Miller, John Moult, Lipika R Pal, Castrense Savojardo, Yizhou Yin, Yaoqi Zhou, Predrag Radivojac, Yana Bromberg
Assessment of methods for predicting the effects of PTEN and TPMT protein variants. Human mutation 40 (9) (2019)
Yanran Wang, Yana Bromberg
Identifying mutation-driven changes in gene functionality that lead to venous thromboembolism. Human mutation 40 (9) (2019)
Laura Kasak, Constantina Bakolitsa, Zhiqiang Hu, Changhua Yu, Jasper Rine, Dago F Dimster-Denk, Gaurav Pandey, Greet De Baets, Yana Bromberg, Chen Cao, Emidio Capriotti, Rita Casadio, Joost Van Durme, Manuel Giollo, Rachel Karchin, Panagiostis Katsonis, Emanuela Leonardi, Olivier Lichtarge, Pier Luigi Martelli, David Masica, Sean D Mooney, Ayodeji Olatubosun, Predrag Radivojac, Frederic Rousseau, Lipika R Pal, Castrense Savojardo, Joost Schymkowitz, Janita Thusberg, Silvio C E Tosatto, Mauno Vihinen, Jouni Väliaho, Susanna Repo, John Moult, Steven E Brenner, Iddo Friedberg
Assessing computational predictions of the phenotypic effect of cystathionine-beta-synthase variants. Human mutation 40 (9) (2019)

Yana Bromberg.css-eqlu8i{font-size:small;padding-left:4px;} (Y Bromberg)

Publication Activity (10 Years)

Top Topics

Top Venues

Yana Bromberg (Y Bromberg)