Thomas C Terwilliger (Tom C Terwilliger)

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 28

Top Venues

Acta crystallographica. Section D, Structural biology

Nature methods

Scientific reports

IUCrJ

New Mexico Consortium

This page only lists publications with an associated author ORCID identifier.

Affiliation History

New Mexico Consortium Oct 03 2017

United States

Senior Scientist

Los Alamos National Laboratory Feb 03 1992

United States

Laboratory Fellow :: B-11: Bioenergy and Biome Sciences

Publications

Randy J Read, Eric F Pettersen, Airlie J McCoy, Tristan I Croll, Thomas C Terwilliger, Billy K Poon, Elaine C Meng, Dorothee Liebschner, Paul D Adams
Likelihood-based interactive local docking into cryo-EM maps in ChimeraX. Acta crystallographica. Section D, Structural biology 80 (Pt 8) (2024)
Randy J Read, Eric F Pettersen, Airlie J McCoy, Tristan I Croll, Thomas C Terwilliger, Billy K Poon, Elaine C Meng, Dorothee Liebschner, Paul D Adams
Likelihood-based interactive local docking into cryo-EM maps in ChimeraX. Acta crystallographica. Section D, Structural biology 80 (Pt 8) (2024)
Randy J Read, Eric F Pettersen, Airlie J McCoy, Tristan I Croll, Thomas C Terwilliger, Billy K Poon, Elaine C Meng, Dorothee Liebschner, Paul D Adams
Likelihood-based interactive local docking into cryo-EM maps in ChimeraX. Acta crystallographica. Section D, Structural biology (2024)
Randy J Read, Eric F Pettersen, Airlie J McCoy, Tristan I Croll, Thomas C Terwilliger, Billy K Poon, Elaine C Meng, Dorothee Liebschner, Paul D Adams
Likelihood-based interactive local docking into cryo-EM maps in ChimeraX. Acta crystallographica. Section D, Structural biology 80 (Pt 8) (2024)
Thomas C Terwilliger, Pavel V Afonine, Dorothee Liebschner, Tristan I Croll, Airlie J McCoy, Robert D Oeffner, Christopher J Williams, Billy K Poon, Jane S Richardson, Randy J Read, Paul D Adams
Accelerating crystal structure determination with iterative AlphaFold prediction. Acta crystallographica. Section D, Structural biology 79 (Pt 3) (2023)
Thomas C Terwilliger, Pavel V Afonine, Dorothee Liebschner, Tristan I Croll, Airlie J McCoy, Robert D Oeffner, Christopher J Williams, Billy K Poon, Jane S Richardson, Randy J Read, Paul D Adams
Accelerating crystal structure determination with iterative AlphaFold prediction. Acta crystallographica. Section D, Structural biology 79 (Pt 3) (2023)
Takaaki Kato, Ui Okada, Li-Wei Hung, Eiki Yamashita, Heung-Bok Kim, Chang Yub Kim, Thomas C Terwilliger, Herbert P Schweizer, Satoshi Murakami
Crystal structures of multidrug efflux transporters from Burkholderia pseudomallei suggest details of transport mechanism. Proceedings of the National Academy of Sciences of the United States of America 120 (29) (2023)
Randy J Read, Claudia Millán, Airlie J McCoy, Thomas C Terwilliger
Likelihood-based signal and noise analysis for docking of models into cryo-EM maps. Acta crystallographica. Section D, Structural biology (2023)
Thomas C Terwilliger, Dorothee Liebschner, Tristan I Croll, Christopher J Williams, Airlie J McCoy, Billy K Poon, Pavel V Afonine, Robert D Oeffner, Jane S Richardson, Randy J Read, Paul D Adams
AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination. Nature methods (2023)
Claudia Millán, Airlie J McCoy, Thomas C Terwilliger, Randy J Read
Likelihood-based docking of models into cryo-EM maps. Acta crystallographica. Section D, Structural biology (2023)
Pavel V Afonine, Oleg V Sobolev, Nigel W Moriarty, Thomas C Terwilliger, Paul D Adams
Overall protein structure quality assessment using hydrogen-bonding parameters. Acta crystallographica. Section D, Structural biology (2023)
Thomas C Terwilliger, Pavel V Afonine, Dorothee Liebschner, Tristan I Croll, Airlie J McCoy, Robert D Oeffner, Christopher J Williams, Billy K Poon, Jane S Richardson, Randy J Read, Paul D Adams
Accelerating crystal structure determination with iterative AlphaFold prediction. Acta crystallographica. Section D, Structural biology 79 (Pt 3) (2023)
Reliza J McGinnis, Chad A Brambley, Brandon Stamey, William C Green, Kimberly N Gragg, Erin R Cafferty, Thomas C Terwilliger, Michal Hammel, Thomas J Hollis, Justin M Miller, Maria D Gainey, Jamie R Wallen
A monomeric mycobacteriophage immunity repressor utilizes two domains to recognize an asymmetric DNA sequence. Nature communications 13 (1) (2022)
Robert D Oeffner, Tristan I Croll, Claudia Millán, Billy K Poon, Christopher J Schlicksup, Randy J Read, Thomas C Terwilliger
Putting AlphaFold models to work with phenix.process_predicted_model and ISOLDE. Acta crystallographica. Section D, Structural biology 78 (Pt 11) (2022)
Thomas C Terwilliger, Billy K Poon, Pavel V Afonine, Christopher J Schlicksup, Tristan I Croll, Claudia Millán, Jane S Richardson, Randy J Read, Paul D Adams
Improved AlphaFold modeling with implicit experimental information. Nature methods 19 (11) (2022)
Thomas C Terwilliger, Oleg V Sobolev, Pavel V Afonine, Paul D Adams, Chi Min Ho, Xiaorun Li, Z Hong Zhou
Protein identification from electron cryomicroscopy maps by automated model building and side-chain matching. Acta crystallographica. Section D, Structural biology 77 (Pt 4) (2021)
Catherine L Lawson, Andriy Kryshtafovych, Paul D Adams, Pavel V Afonine, Matthew L Baker, Benjamin A Barad, Paul S Bond, Tom Burnley, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kathryn D Cowtan, Ken A Dill, Frank DiMaio, Daniel P Farrell, Brian K Shoichet, Mark A Herzik, Soon Wen Hoh, Jie Hou, Li-Wei Hung, Maxim Igaev, Agnel-Praveen Joseph, Daisuke Kihara, Dilip Kumar, Sumit Mittal, Bohdan Monastyrskyy, Mateusz Olek, Colin M Palmer, Ardan Patwardhan, Alberto Perez, Jonas Pfab, Grigore D Pintilie, Jane S Richardson, Peter B Rosenthal, Daipayan Sarkar, Luisa U Schäfer, Michael F Schmid, Gunnar F Schröder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Genki Terashi, Thomas C Terwilliger, Andrea C Vaiana, Liguo Wang, Zhe Wang, Stephanie A Wankowicz, Christopher J Williams, Martyn David Winn, Tianqi Wu, Xiaodi Yu, Kaiming Zhang, Helen M Berman, Wah Chiu
Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge. Nature methods 18 (2) (2021)
Thomas C Terwilliger, Steven J Ludtke, Randy J Read, Paul D Adams, Pavel V Afonine
Improvement of cryo-EM maps by density modification. Nature methods 17 (9) (2020)
Thomas C Terwilliger, Oleg V Sobolev, Pavel V Afonine, Paul D Adams, Randy J Read
Density modification of cryo-EM maps. Acta crystallographica. Section D, Structural biology 76 (Pt 10) (2020)
Raghu Bhagavat, Heung-Bok Kim, Chang-Yub Kim, Thomas C Terwilliger, Dolly Mehta, Narayanaswamy Srinivasan, Nagasuma Chandra
Publisher Correction: A genome-wide structure-based survey of nucleotide binding proteins in M. tuberculosis. Scientific reports 10 (1) (2020)
Dorothee Liebschner, Pavel V Afonine, Matthew L Baker, Gábor Bunkóczi, Vincent B Chen, Tristan I Croll, Bradley J Hintze, Li-Wei Hung, Swati Jain, Airlie J McCoy, Nigel W Moriarty, Robert D Oeffner, Billy K Poon, Michael G Prisant, Randy J Read, Jane S Richardson, David C Richardson, Massimo D Sammito, Oleg V Sobolev, Duncan H Stockwell, Thomas C Terwilliger, Alexandre G Urzhumtsev, Lizbeth L Videau, Christopher J Williams, Paul D Adams
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix. Acta crystallographica. Section D, Structural biology 75 (Pt 10) (2019)
Thomas C Terwilliger, Paul D Adams, Pavel V Afonine, Oleg V Sobolev
Cryo-EM map interpretation and protein model-building using iterative map segmentation. Protein science : a publication of the Protein Society 29 (1) (2019)
Chi-Min Ho, Xiaorun Li, Mason Lai, Thomas C Terwilliger, Josh R Beck, James Akira Wohlschlegel, Daniel E Goldberg, Anthony W P Fitzpatrick, Z Hong Zhou
Bottom-up structural proteomics: cryoEM of protein complexes enriched from the cellular milieu. Nature methods 17 (1) (2019)
Tomonari Horikawa, Li-Wei Hung, Heung Bok Kim, David Shaya, Chang Yub Kim, Thomas C Terwilliger, Eiki Yamashita, Maho Aoki, Ui Okada, Satoshi Murakami
BpeB, a major resistance-nodulation-cell division transporter from Burkholderia cenocepacia: construct design, crystallization and preliminary structural analysis. Acta crystallographica. Section F, Structural biology communications 74 (Pt 11) (2018)
Pavel V Afonine, Bruno P Klaholz, Nigel W Moriarty, Billy K Poon, Oleg V Sobolev, Thomas C Terwilliger, Paul D Adams, Alexandre Urzhumtsev
New tools for the analysis and validation of cryo-EM maps and atomic models. Acta crystallographica. Section D, Structural biology 74 (Pt 9) (2018)
Thomas C Terwilliger, Paul D Adams, Pavel V Afonine, Oleg V Sobolev
A fully automatic method yielding initial models from high-resolution cryo-electron microscopy maps. Nature methods 15 (11) (2018)
Raghu Bhagavat, Heung-Bok Kim, Chang-Yub Kim, Thomas C Terwilliger, Dolly Mehta, Narayanaswamy Srinivasan, Nagasuma Chandra
A genome-wide structure-based survey of nucleotide binding proteins in M. tuberculosis. Scientific reports 7 (1) (2017)
Loes M J Kroon-Batenburg, John R Helliwell, Brian McMahon, Thomas C Terwilliger
Raw diffraction data preservation and reuse: overview, update on practicalities and metadata requirements. IUCrJ 4 (Pt 1) (2017)
Ryan N Jackson, Airlie J McCoy, Thomas C Terwilliger, Randy J Read, Blake Wiedenheft
X-ray structure determination using low-resolution electron microscopy maps for molecular replacement. Nature protocols 10 (9) (2015)
Gábor Bunkóczi, Airlie J McCoy, Nathaniel Echols, Ralf W Grosse-Kunstleve, Paul D Adams, James M Holton, Randy J Read, Thomas C Terwilliger
Macromolecular X-ray structure determination using weak, single-wavelength anomalous data. Nature methods 12 (2) (2014)

Thomas C Terwilliger.css-eqlu8i{font-size:small;padding-left:4px;} (Tom C Terwilliger)

Publication Activity (10 Years)

Top Topics

Top Venues

Thomas C Terwilliger (Tom C Terwilliger)