Xiaodi Yu

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 20

Top Venues

PLoS pathogens

Nature communications

Nature structural & molecular biology

Nature methods

This page only lists publications with an associated author ORCID identifier.

Publications

Rosalie E Matico, Xiaodi Yu, Robyn Miller, Sandeep Somani, M Daniel Ricketts, Nikit Kumar, Ruth A Steele, Quintus Medley, Scott Berger, Benjamin Faustin, Sujata Sharma
Structural basis of the human NAIP/NLRC4 inflammasome assembly and pathogen sensing. Nature structural & molecular biology 31 (1) (2024)
Xiaodi Yu, Rosalie E Matico, Robyn Miller, Dhruv Chauhan, Bertrand Van Schoubroeck, Karolien Grauwen, Javier Suarez, Beth Pietrak, Nandan Haloi, Yanting Yin, Gary John Tresadern, Laura Perez-Benito, Erik Lindahl, Astrid Bottelbergs, Daniel Oehlrich, Nina Van Opdenbosch, Sujata Sharma
Structural basis for the oligomerization-facilitated NLRP3 activation. Nature communications 15 (1) (2024)
Mark J G Bakkers, Tina Ritschel, Machteld Tiemessen, Jacobus Dijkman, Angelo A Zuffianò, Xiaodi Yu, Daan van Overveld, Lam Le, Richard Voorzaat, Marlies M van Haaren, Martijn de Man, Sem Tamara, Leslie van der Fits, Roland C Zahn, Jarek Juraszek, Johannes P M Langedijk
Efficacious human metapneumovirus vaccine based on AI-guided engineering of a closed prefusion trimer. Nature communications 15 (1) (2024)
Rosalie E Matico, Xiaodi Yu, Robyn Miller, Sandeep Somani, M Daniel Ricketts, Nikit Kumar, Ruth A Steele, Quintus Medley, Scott Berger, Benjamin Faustin, Sujata Sharma
Structural basis of the human NAIP/NLRC4 inflammasome assembly and pathogen sensing. Nature structural & molecular biology 31 (1) (2024)
Mark J G Bakkers, Tina Ritschel, Machteld Tiemessen, Jacobus Dijkman, Angelo A Zuffianò, Xiaodi Yu, Daan van Overveld, Lam Le, Richard Voorzaat, Marlies M van Haaren, Martijn de Man, Sem Tamara, Leslie van der Fits, Roland C Zahn, Jarek Juraszek, Johannes P M Langedijk
Efficacious human metapneumovirus vaccine based on AI-guided engineering of a closed prefusion trimer. Nature communications 15 (1) (2024)
Xiaodi Yu, Rosalie E Matico, Robyn Miller, Dhruv Chauhan, Bertrand Van Schoubroeck, Karolien Grauwen, Javier Suarez, Beth Pietrak, Nandan Haloi, Yanting Yin, Gary John Tresadern, Laura Perez-Benito, Erik Lindahl, Astrid Bottelbergs, Daniel Oehlrich, Nina Van Opdenbosch, Sujata Sharma
Structural basis for the oligomerization-facilitated NLRP3 activation. Nature communications 15 (1) (2024)
Rosalie E Matico, Xiaodi Yu, Robyn Miller, Sandeep Somani, M Daniel Ricketts, Nikit Kumar, Ruth A Steele, Quintus Medley, Scott Berger, Benjamin Faustin, Sujata Sharma
Structural basis of the human NAIP/NLRC4 inflammasome assembly and pathogen sensing. Nature structural & molecular biology 31 (1) (2024)
Rosalie E Matico, Xiaodi Yu, Robyn Miller, Sandeep Somani, M Daniel Ricketts, Nikit Kumar, Ruth A Steele, Quintus Medley, Scott Berger, Benjamin Faustin, Sujata Sharma
Structural basis of the human NAIP/NLRC4 inflammasome assembly and pathogen sensing. Nature structural & molecular biology 31 (1) (2024)
Xiaodi Yu, Rosalie E Matico, Robyn Miller, Dhruv Chauhan, Bertrand Van Schoubroeck, Karolien Grauwen, Javier Suarez, Beth Pietrak, Nandan Haloi, Yanting Yin, Gary John Tresadern, Laura Perez-Benito, Erik Lindahl, Astrid Bottelbergs, Daniel Oehlrich, Nina Van Opdenbosch, Sujata Sharma
Structural basis for the oligomerization-facilitated NLRP3 activation. Nature communications 15 (1) (2024)
Rosalie E Matico, Xiaodi Yu, Robyn Miller, Sandeep Somani, M Daniel Ricketts, Nikit Kumar, Ruth A Steele, Quintus Medley, Scott Berger, Benjamin Faustin, Sujata Sharma
Structural basis of the human NAIP/NLRC4 inflammasome assembly and pathogen sensing. Nature structural & molecular biology (2024)
Xiaodi Yu, Jarek Juraszek, Lucy Rutten, Mark J G Bakkers, Sven Blokland, Jelle M Melchers, Niels J F van den Broek, Annemiek Y W Verwilligen, Pravien Abeywickrema, Johan Vingerhoets, Jean-Marc Neefs, Shah A Mohamed Bakhash, Pavitra Roychoudhury, Alex Greninger, Sujata Sharma, Johannes P M Langedijk
Convergence of immune escape strategies highlights plasticity of SARS-CoV-2 spike. PLoS pathogens 19 (5) (2023)
Xiaodi Yu, Jarek Juraszek, Lucy Rutten, Mark J G Bakkers, Sven Blokland, Jelle M Melchers, Niels J F van den Broek, Annemiek Y W Verwilligen, Pravien Abeywickrema, Johan Vingerhoets, Jean-Marc Neefs, Shah A Mohamed Bakhash, Pavitra Roychoudhury, Alex Greninger, Sujata Sharma, Johannes P M Langedijk
Convergence of immune escape strategies highlights plasticity of SARS-CoV-2 spike. PLoS pathogens 19 (5) (2023)
Xiaodi Yu, Pravien Abeywickrema, Brecht Bonneux, Ishani Behera, Brandon Anson, Edgar Jacoby, Amy Fung, Suraj Adhikary, Anusarka Bhaumik, Rodrigo J Carbajo, Suzanne De Bruyn, Robyn Miller, Aaron Patrick, Quyen Pham, Madison Piassek, Nick Verheyen, Afzaal M Shareef, Priscila Sutto-Ortiz, Nina Ysebaert, Herman Van Vlijmen, Tim H M Jonckers, Florence Herschke, Jason S Mclellan, Etienne Decroly, Rachel Fearns, Sandrine Grosse, Dirk Roymans, Sujata Sharma, Peter Rigaux, Zhinan Jin
Structural and mechanistic insights into the inhibition of respiratory syncytial virus polymerase by a non-nucleoside inhibitor. Communications biology 6 (1) (2023)
Xiaodi Yu, Jarek Juraszek, Lucy Rutten, Mark J G Bakkers, Sven Blokland, Jelle M Melchers, Niels J F van den Broek, Annemiek Y W Verwilligen, Pravien Abeywickrema, Johan Vingerhoets, Jean-Marc Neefs, Shah A Mohamed Bakhash, Pavitra Roychoudhury, Alex Greninger, Sujata Sharma, Johannes P M Langedijk
Convergence of immune escape strategies highlights plasticity of SARS-CoV-2 spike. PLoS pathogens 19 (5) (2023)
Xiaodi Yu, Jarek Juraszek, Lucy Rutten, Mark J G Bakkers, Sven Blokland, Jelle M Melchers, Niels J F van den Broek, Annemiek Y W Verwilligen, Pravien Abeywickrema, Johan Vingerhoets, Jean-Marc Neefs, Shah A Mohamed Bakhash, Pavitra Roychoudhury, Alex Greninger, Sujata Sharma, Johannes P M Langedijk
Convergence of immune escape strategies highlights plasticity of SARS-CoV-2 spike. PLoS pathogens 19 (5) (2023)
Ye Che, Alexey V Gribenko, Xi Song, Luke D Handke, Kari S Efferen, Kristin Tompkins, Srinivas Kodali, Lorna Nunez, A Krishna Prasad, Lynn M Phelan, Mark Ammirati, Xiaodi Yu, Joshua A Lees, Wei Chen, Lyndsey Martinez, Vidia Roopchand, Seungil Han, Xiayang Qiu, John P DeVincenzo, Kathrin U Jansen, Philip R Dormitzer, Kena A Swanson
Rational Design of a Highly Immunogenic Prefusion-Stabilized F Glycoprotein Antigen for a Respiratory Syncytial Virus Vaccine. Science translational medicine (2023)
Xiaodi Yu, Jarek Juraszek, Lucy Rutten, Mark J G Bakkers, Sven Blokland, Jelle M Melchers, Niels J F van den Broek, Annemiek Y W Verwilligen, Pravien Abeywickrema, Johan Vingerhoets, Jean-Marc Neefs, Shah A Mohamed Bakhash, Pavitra Roychoudhury, Alex Greninger, Sujata Sharma, Johannes P M Langedijk
Convergence of immune escape strategies highlights plasticity of SARS-CoV-2 spike. PLoS pathogens 19 (5) (2023)
Xiaodi Yu, Jarek Juraszek, Lucy Rutten, Mark J G Bakkers, Sven Blokland, Jelle M Melchers, Niels J F van den Broek, Annemiek Y W Verwilligen, Pravien Abeywickrema, Johan Vingerhoets, Jean-Marc Neefs, Shah A Mohamed Bakhash, Pavitra Roychoudhury, Alex Greninger, Sujata Sharma, Johannes P M Langedijk
Convergence of immune escape strategies highlights plasticity of SARS-CoV-2 spike. PLoS pathogens 19 (5) (2023)
Catherine L Lawson, Andriy Kryshtafovych, Paul D Adams, Pavel V Afonine, Matthew L Baker, Benjamin A Barad, Paul S Bond, Tom Burnley, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kathryn D Cowtan, Ken A Dill, Frank DiMaio, Daniel P Farrell, Brian K Shoichet, Mark A Herzik, Soon Wen Hoh, Jie Hou, Li-Wei Hung, Maxim Igaev, Agnel-Praveen Joseph, Daisuke Kihara, Dilip Kumar, Sumit Mittal, Bohdan Monastyrskyy, Mateusz Olek, Colin M Palmer, Ardan Patwardhan, Alberto Perez, Jonas Pfab, Grigore D Pintilie, Jane S Richardson, Peter B Rosenthal, Daipayan Sarkar, Luisa U Schäfer, Michael F Schmid, Gunnar F Schröder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Genki Terashi, Thomas C Terwilliger, Andrea C Vaiana, Liguo Wang, Zhe Wang, Stephanie A Wankowicz, Christopher J Williams, Martyn David Winn, Tianqi Wu, Xiaodi Yu, Kaiming Zhang, Helen M Berman, Wah Chiu
Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge. Nature methods 18 (2) (2021)
Nicholas G Fox, Xiaodi Yu, Xidong Feng, Henry J Bailey, Alain Martelli, Joseph F Nabhan, Claire Strain-Damerell, Christine Bulawa, Wyatt W Yue, Seungil Han
Structure of the human frataxin-bound iron-sulfur cluster assembly complex provides insight into its activation mechanism. Nature communications 10 (1) (2019)

Xiaodi Yu.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Xiaodi Yu