Timothy J Donohue

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 53

Top Venues

Microbiology resource announcements

mBio

Applied and environmental microbiology

mSystems

University of Wisconsin-Madison

Pennsylvania State University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Wisconsin-Madison Sep 01 2017

United States

Interim Director :: Wisconsin Energy Institute

University of Wisconsin-Madison Sep 29 2007

United States

Director :: Great Lakes Bioenergy Research Center

University of Wisconsin Madison

United States

Professor :: Bacteriology

University of Wisconsin Madison

United States

Associate Professor :: Bacteriology

University of Wisconsin Madison

United States

Assistant Professor :: Bacteriology

University of Illinois System

United States

Visiting Research Assistant Professor :: Microbiology

University of Illinois System

United States

Postdoctoral :: Microbiology

Education History

Pennsylvania State University

United States

PHD :: Microbiology

Pennsylvania State University

United States

MSC :: Microbiology

New York University Polytechnic Institute

United States

BSC :: Biology

Publications

Daniel Parrell, Joseph Olson, Rachelle A Lemke, Timothy J Donohue, Elizabeth R Wright
Quantitative Analysis of Rhodobacter sphaeroides Storage Organelles via Cryo-Electron Tomography and Light Microscopy. Biomolecules 14 (8) (2024)
Kevin A Walters, Kevin S Myers, Timothy J Donohue, Daniel R Noguera
Metagenome-assembled genomes from microbiomes fermenting dairy coproducts. Microbiology resource announcements 13 (7) (2024)
Fletcher Metz, Abigail M Olsen, Fachuang Lu, Kevin S Myers, Marco N Allemann, Joshua K Michener, Daniel R Noguera, Timothy J Donohue
Catabolism of β-5 linked aromatics by Novosphingobium aromaticivorans . mBio 15 (8) (2024)
Fletcher Metz, Abigail M Olsen, Fachuang Lu, Kevin S Myers, Marco N Allemann, Joshua K Michener, Daniel R Noguera, Timothy J Donohue
Catabolism of β-5 linked aromatics by Novosphingobium aromaticivorans . mBio 15 (8) (2024)
Fletcher Metz, Abigail M Olsen, Fachuang Lu, Kevin S Myers, Marco N Allemann, Joshua K Michener, Daniel R Noguera, Timothy J Donohue
Catabolism of β-5 linked aromatics by Novosphingobium aromaticivorans . mBio 15 (8) (2024)
Fletcher Metz, Abigail M Olsen, Fachuang Lu, Kevin S Myers, Marco N Allemann, Joshua K Michener, Daniel R Noguera, Timothy J Donohue
Catabolism of β-5 linked aromatics by Novosphingobium aromaticivorans . mBio (2024)
Daniel Parrell, Joseph Olson, Rachelle A Lemke, Timothy J Donohue, Elizabeth R Wright
Quantitative Analysis of Rhodobacter sphaeroides Storage Organelles via Cryo-Electron Tomography and Light Microscopy. Biomolecules 14 (8) (2024)
Kevin A Walters, Kevin S Myers, Timothy J Donohue, Daniel R Noguera
Metagenome-assembled genomes from microbiomes fermenting dairy coproducts. Microbiology resource announcements (2024)
Kevin S Myers, Michael Place, Audrey P Gasch, Daniel R Noguera, Timothy J Donohue
Auto-MuRCiS: a streamlined software package for analysis of multiplex, randomized CRISPR interference sequencing data. Microbiology resource announcements (2024)
Kevin A Walters, Kevin S Myers, Timothy J Donohue, Daniel R Noguera
Metagenome-assembled genomes from microbiomes fermenting dairy coproducts. Microbiology resource announcements 13 (7) (2024)
Kevin A Walters, Kevin S Myers, Timothy J Donohue, Daniel R Noguera
Metagenome-assembled genomes from microbiomes fermenting dairy coproducts. Microbiology resource announcements 13 (7) (2024)
Avery C Vilbert, Wayne S Kontur, Derek Gille, Daniel R Noguera, Timothy J Donohue
Engineering Novosphingobium aromaticivorans to produce cis,cis -muconic acid from biomass aromatics. Applied and environmental microbiology 90 (1) (2023)
Ashley N Hall, Benjamin W Hall, Kyle J Kinney, Gabby G Olsen, Amy B Banta, Daniel R Noguera, Timothy J Donohue, Jason M Peters
Tools for Genetic Engineering and Gene Expression Control in Novosphingobium aromaticivorans and Rhodobacter sphaeroides . bioRxiv : the preprint server for biology (2023)
Avery C Vilbert, Wayne S Kontur, Derek Gille, Daniel R Noguera, Timothy J Donohue
Engineering Novosphingobium aromaticivorans to produce cis,cis -muconic acid from biomass aromatics. Applied and environmental microbiology 90 (1) (2023)
François Alberge, Bryan D Lakey, Ryan E Schaub, Alice C Dohnalkova, Kimberley C Lemmer, Joseph P Dillard, Daniel R Noguera, Timothy J Donohue
A previously uncharacterized divisome-associated lipoprotein, DalA, is needed for normal cell division in Rhodobacterales . mBio (2023)
Avery C Vilbert, Wayne S Kontur, Derek Gille, Daniel R Noguera, Timothy J Donohue
Engineering Novosphingobium aromaticivorans to produce cis,cis -muconic acid from biomass aromatics. Applied and environmental microbiology (2023)
Nicole A Ellis, Kevin S Myers, Jessica Tung, Anne Davidson Ward, Kathryn Johnston, Katherine E Bonnington, Timothy J Donohue, Matthias P Machner
A randomized multiplex CRISPRi-Seq approach for the identification of critical combinations of genes. eLife 12 (2023)
Arturo Casadevall, Peggy A Cotter, Lynn W Enquist, Timothy J Donohue, Stefano Bertuzzi, Nguyen K Nguyen
An account of American Academy of Microbiology reforms and pandemic operations. mBio (2023)
Bryan D Lakey, François Alberge, Daniel Parrell, Elizabeth R Wright, Daniel R Noguera, Timothy J Donohue
The role of CenKR in the coordination of Rhodobacter sphaeroides cell elongation and division. mBio (2023)
Avery C Vilbert, Wayne S Kontur, Derek Gille, Daniel R Noguera, Timothy J Donohue
Engineering Novosphingobium aromaticivorans to produce cis,cis -muconic acid from biomass aromatics. Applied and environmental microbiology 90 (1) (2023)
Benjamin W Hall, Wayne S Kontur, Jeanette C Neri, Derek M Gille, Daniel R Noguera, Timothy J Donohue
Production of carotenoids from aromatics and pretreated lignocellulosic biomass by Novosphingobium aromaticivorans . Applied and environmental microbiology (2023)
Avery C Vilbert, Wayne S Kontur, Derek Gille, Daniel R Noguera, Timothy J Donohue
Engineering Novosphingobium aromaticivorans to produce cis,cis -muconic acid from biomass aromatics. Applied and environmental microbiology 90 (1) (2023)
Nathaniel W Fortney, Kevin S Myers, Abel T Ingle, Kevin A Walters, Matthew J Scarborough, Timothy J Donohue, Daniel R Noguera
Metagenomes and Metagenome-Assembled Genomes from Microbiomes Metabolizing Thin Stillage from an Ethanol Biorefinery. Microbiology resource announcements 11 (8) (2022)
Matthew J Scarborough, Kevin S Myers, Nathaniel W Fortney, Abel T Ingle, Timothy J Donohue, Daniel R Noguera
Metagenome-Assembled Genomes from a Microbiome Converting Xylose to Medium-Chain Carboxylic Acids. Microbiology resource announcements 11 (4) (2022)
Alexandra M Linz, Yanjun Ma, Samuel Scholz, Daniel R Noguera, Timothy J Donohue
iNovo479: Metabolic Modeling Provides a Roadmap to Optimize Bioproduct Yield from Deconstructed Lignin Aromatics by Novosphingobium aromaticivorans . Metabolites 12 (4) (2022)
Abel T Ingle, Nathaniel W Fortney, Kevin S Myers, Kevin A Walters, Matthew J Scarborough, Timothy J Donohue, Daniel R Noguera
Metagenome-Assembled Genomes from a Microbiome Grown in Dairy Manure Hydrolysate. Microbiology resource announcements 11 (8) (2022)
Kevin A Walters, Kevin S Myers, Hui Wang, Nathaniel W Fortney, Abel T Ingle, Matthew J Scarborough, Timothy J Donohue, Daniel R Noguera
Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate. Microbiology resource announcements 11 (7) (2022)
Bryan D Lakey, Kevin S Myers, François Alberge, Erin L Mettert, Patricia J Kiley, Daniel R Noguera, Timothy J Donohue
The essential Rhodobacter sphaeroides CenKR two-component system regulates cell division and envelope biosynthesis. PLoS genetics 18 (6) (2022)
Natalie K Beach, Kevin S Myers, Brian R Owen, Matt Seib, Timothy J Donohue, Daniel R Noguera
Correction for Beach et al., "Exploring the Meta-regulon of the CRP/FNR Family of Global Transcriptional Regulators in a Partial-Nitritation Anammox Microbiome". mSystems 7 (3) (2022)
Natalie K Beach, Kevin S Myers, Timothy J Donohue, Daniel R Noguera
Metagenomes from 25 Low-Abundance Microbes in a Partial Nitritation Anammox Microbiome. Microbiology resource announcements 11 (6) (2022)
Natalie K Beach, Kevin S Myers, Brian R Owen, Matt Seib, Timothy J Donohue, Daniel R Noguera
Exploring the Meta-regulon of the CRP/FNR Family of Global Transcriptional Regulators in a Partial-Nitritation Anammox Microbiome. mSystems 6 (5) (2021)
Jose M Perez, Wayne S Kontur, Carson Gehl, Derek M Gille, Yanjun Ma, Alyssa V Niles, German Umana, Timothy J Donohue, Daniel R Noguera
Redundancy in aromatic O-demethylation and ring opening reactions in Novosphingobium aromaticivorans and their impact in the metabolism of plant derived phenolics. Applied and environmental microbiology (2021)
Kevin S Myers, Michael Place, Jacek Kominek, Daniel R Noguera, Timothy J Donohue
Delila-PY, a Pipeline for Utilizing the Delila Suite of Software to Identify Potential DNA Binding Motifs. Microbiology resource announcements 10 (15) (2021)
David G Glanville, Caroline Mullineaux-Sanders, Christopher J Corcoran, Brian T Burger, Saheed Imam, Timothy J Donohue, Andrew T Ulijasz
A High-Throughput Method for Identifying Novel Genes That Influence Metabolic Pathways Reveals New Iron and Heme Regulation in Pseudomonas aeruginosa. mSystems 6 (1) (2021)
Alexandra M Linz, Yanjun Ma, Jose M Perez, Kevin S Myers, Wayne S Kontur, Daniel R Noguera, Timothy J Donohue
Aromatic Dimer Dehydrogenases from Novosphingobium aromaticivorans Reduce Monoaromatic Diketones. Applied and environmental microbiology 87 (24) (2021)
Kevin S Myers, Jessica M Vera, Kimberly C Lemmer, Alexandra M Linz, Robert Landick, Daniel R Noguera, Timothy J Donohue
Genome-Wide Identification of Transcription Start Sites in Two Alphaproteobacteria, Rhodobacter sphaeroides 2.4.1 and Novosphingobium aromaticivorans DSM 12444. Microbiology resource announcements 9 (36) (2020)
Rachelle A S Lemke, Stephanie M Olson, Kaitlin Morse, Steven D Karlen, Alan Higbee, Emily T Beebe, John Ralph, Joshua J Coon, Brian G Fox, Timothy J Donohue
A bacterial biosynthetic pathway for methylated furan fatty acids. The Journal of biological chemistry 295 (29) (2020)
J Zachary Oshlag, Yanjun Ma, Kaitlin Morse, Brian T Burger, Rachelle A Lemke, Steven D Karlen, Kevin S Myers, Timothy J Donohue, Daniel R Noguera
Anaerobic Degradation of Syringic Acid by an Adapted Strain of Rhodopseudomonas palustris. Applied and environmental microbiology 86 (3) (2020)
Kimberly C Lemmer, François Alberge, Kevin S Myers, Alice C Dohnalkova, Ryan E Schaub, Jonathan D Lenz, Saheed Imam, Joseph P Dillard, Daniel R Noguera, Timothy J Donohue
The NtrYX Two-Component System Regulates the Bacterial Cell Envelope. mBio 11 (3) (2020)
Matthew J Scarborough, Joshua J Hamilton, Elizabeth A Erb, Timothy J Donohue, Daniel R Noguera
Diagnosing and Predicting Mixed-Culture Fermentations with Unicellular and Guild-Based Metabolic Models. mSystems 5 (5) (2020)
Kemardo K Henry, Wilma Ross, Kevin S Myers, Kimberly C Lemmer, Jessica M Vera, Robert Landick, Timothy J Donohue, Richard L Gourse
A majority of Rhodobacter sphaeroides promoters lack a crucial RNA polymerase recognition feature, enabling coordinated transcription activation. Proceedings of the National Academy of Sciences of the United States of America 117 (47) (2020)
Kevin S Myers, Michael Place, Daniel R Noguera, Timothy J Donohue
COnTORT: COmprehensive Transcriptomic ORganizational Tool for Simultaneously Retrieving and Organizing Numerous Gene Expression Data Sets from the NCBI Gene Expression Omnibus Database. Microbiology resource announcements 9 (25) (2020)
Horia Todor, Hendrik Osadnik, Elizabeth A Campbell, Kevin S Myers, Hao Li, Timothy J Donohue, Carol A Gross
Rewiring the specificity of extracytoplasmic function sigma factors. Proceedings of the National Academy of Sciences of the United States of America 117 (52) (2020)
Matthew J Scarborough, Kevin S Myers, Timothy J Donohue, Daniel R Noguera
Medium-Chain Fatty Acid Synthesis by "Candidatus Weimeria bifida" gen. nov., sp. nov., and "Candidatus Pseudoramibacter fermentans" sp. nov. Applied and environmental microbiology 86 (3) (2020)
Michael A Lonetto, Timothy J Donohue, Carol A Gross, Mark J Buttner
Discovery of the extracytoplasmic function σ factors. Molecular microbiology 112 (2) (2019)
Timothy J Donohue
Shedding light on a Group IV (ECF11) alternative σ factor. Molecular microbiology 112 (2) (2019)
Matthew J Scarborough, Christopher E Lawson, Joshua J Hamilton, Timothy J Donohue, Daniel R Noguera
Metatranscriptomic and Thermodynamic Insights into Medium-Chain Fatty Acid Production Using an Anaerobic Microbiome. mSystems 3 (6) (2018)
Wayne S Kontur, Charles N Olmsted, Larissa M Yusko, Alyssa V Niles, Kevin A Walters, Emily T Beebe, Kirk A Vander Meulen, Steven D Karlen, Daniel L Gall, Daniel R Noguera, Timothy J Donohue
A heterodimeric glutathione S-transferase that stereospecifically breaks lignin's β(R)-aryl ether bond reveals the diversity of bacterial β-etherases. The Journal of biological chemistry 294 (6) (2018)
Daniel L Gall, Wayne S Kontur, Wu Lan, Hoon Kim, Yanding Li, John Ralph, Timothy J Donohue, Daniel R Noguera
In Vitro Enzymatic Depolymerization of Lignin with Release of Syringyl, Guaiacyl, and Tricin Units. Applied and environmental microbiology 84 (3) (2018)
Kimberly C Lemmer, Weiping Zhang, Samantha J Langer, Alice C Dohnalkova, Dehong Hu, Rachelle A Lemke, Jeff S Piotrowski, Galya Orr, Daniel R Noguera, Timothy J Donohue
Mutations That Alter the Bacterial Cell Envelope Increase Lipid Production. mBio 8 (3) (2017)
Brian T Burger, Saheed Imam, Matthew J Scarborough, Daniel R Noguera, Timothy J Donohue
Combining Genome-Scale Experimental and Computational Methods To Identify Essential Genes in Rhodobacter sphaeroides. mSystems 2 (3) (2017)
Martin J Blaser, Zoe G Cardon, Mildred K Cho, Jeffrey L Dangl, Timothy J Donohue, Jessica L Green, Rob Knight, Mary E Maxon, Trent R Northen, Katherine S Pollard, Eoin L Brodie
Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges. mBio 7 (3) (2016)
Melanie A Spero, Joshua R Brickner, Jordan T Mollet, Tippapha Pisithkul, Daniel Amador-Noguez, Timothy J Donohue
Different Functions of Phylogenetically Distinct Bacterial Complex I Isozymes. Journal of bacteriology 198 (8) (2016)
Saheed Imam, Daniel R Noguera, Timothy J Donohue
CceR and AkgR regulate central carbon and energy metabolism in alphaproteobacteria. mBio 6 (1) (2015)
Ti-Yu Lin, Thiago M A Santos, Wayne S Kontur, Timothy J Donohue, Douglas B Weibel
A Cardiolipin-Deficient Mutant of Rhodobacter sphaeroides Has an Altered Cell Shape and Is Impaired in Biofilm Formation. Journal of bacteriology 197 (21) (2015)
Kimberly C Lemmer, Alice C Dohnalkova, Daniel R Noguera, Timothy J Donohue
Oxygen-dependent regulation of bacterial lipid production. Journal of bacteriology 197 (9) (2015)
Melanie A Spero, Frank O Aylward, Cameron R Currie, Timothy J Donohue
Phylogenomic analysis and predicted physiological role of the proton-translocating NADH:quinone oxidoreductase (complex I) across bacteria. mBio 6 (2) (2015)

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Publication Activity (10 Years)

Top Topics

Top Venues

Timothy J Donohue