Shinya Fushinobu

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 35

Top Venues

The Journal of biological chemistry

Nature communications

The Plant journal : for cell and molecular biology

Applied microbiology and biotechnology

The University of Tokyo

The University of Tokyo (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

The University of Tokyo

Japan

Professor :: Department of Biotechnology

The University of Tokyo Apr 16 2011 - Nov 30 2012

Japan

Associate Professor :: Department of Biotechnology

The University of Tokyo Nov 16 1997 - Apr 15 2011

Japan

Assistant Professor :: Department of Biotechnology

Education History

The University of Tokyo

Japan

PHD :: Department of Biotechnology

The University of Tokyo

Japan

MSC :: Department of Biotechnology

Publications

Akira Umezawa, Mayuko Matsumoto, Hiroto Handa, Konatsu Nakazawa, Megumi Miyagawa, Georg J Seifert, Daisuke Takahashi, Shinya Fushinobu, Toshihisa Kotake
Cytosolic UDP-L-arabinose synthesis by bifunctional UDP-glucose 4-epimerases in Arabidopsis. The Plant journal : for cell and molecular biology 119 (1) (2024)
Kiyotaka Fujita, Hanako Tsunomachi, Pan Lixia, Shun Maruyama, Masayuki Miyake, Aimi Dakeshita, Kanefumi Kitahara, Katsunori Tanaka, Yukishige Ito, Akihiro Ishiwata, Shinya Fushinobu
Bifidobacterial GH146 β-L-arabinofuranosidase for the removal of β1,3-L-arabinofuranosides on plant glycans. Applied microbiology and biotechnology 108 (1) (2024)
Tomomi Sumida, Satoshi Hiraoka, Keiko Usui, Akihiro Ishiwata, Toru Sengoku, Keith A Stubbs, Katsunori Tanaka, Shigeru Deguchi, Shinya Fushinobu, Takuro Nunoura
Genetic and functional diversity of β-N-acetylgalactosamine-targeting glycosidases expanded by deep-sea metagenome analysis. Nature communications 15 (1) (2024)
Akira Umezawa, Mayuko Matsumoto, Hiroto Handa, Konatsu Nakazawa, Megumi Miyagawa, Georg J Seifert, Daisuke Takahashi, Shinya Fushinobu, Toshihisa Kotake
Cytosolic UDP-L-arabinose synthesis by bifunctional UDP-glucose 4-epimerases in Arabidopsis. The Plant journal : for cell and molecular biology (2024)
Kiyotaka Fujita, Hanako Tsunomachi, Pan Lixia, Shun Maruyama, Masayuki Miyake, Aimi Dakeshita, Kanefumi Kitahara, Katsunori Tanaka, Yukishige Ito, Akihiro Ishiwata, Shinya Fushinobu
Bifidobacterial GH146 β-L-arabinofuranosidase for the removal of β1,3-L-arabinofuranosides on plant glycans. Applied microbiology and biotechnology 108 (1) (2024)
Tomomi Sumida, Satoshi Hiraoka, Keiko Usui, Akihiro Ishiwata, Toru Sengoku, Keith A Stubbs, Katsunori Tanaka, Shigeru Deguchi, Shinya Fushinobu, Takuro Nunoura
Genetic and functional diversity of β-N-acetylgalactosamine-targeting glycosidases expanded by deep-sea metagenome analysis. Nature communications 15 (1) (2024)
Kiyotaka Fujita, Hanako Tsunomachi, Pan Lixia, Shun Maruyama, Masayuki Miyake, Aimi Dakeshita, Kanefumi Kitahara, Katsunori Tanaka, Yukishige Ito, Akihiro Ishiwata, Shinya Fushinobu
Bifidobacterial GH146 β-L-arabinofuranosidase for the removal of β1,3-L-arabinofuranosides on plant glycans. Applied microbiology and biotechnology 108 (1) (2024)
Tomomi Sumida, Satoshi Hiraoka, Keiko Usui, Akihiro Ishiwata, Toru Sengoku, Keith A Stubbs, Katsunori Tanaka, Shigeru Deguchi, Shinya Fushinobu, Takuro Nunoura
Genetic and functional diversity of β-N-acetylgalactosamine-targeting glycosidases expanded by deep-sea metagenome analysis. Nature communications 15 (1) (2024)
Michiko Shimokawa, Akihiro Ishiwata, Toma Kashima, Chiho Nakashima, Jiaman Li, Riku Fukushima, Naomi Sawai, Miku Nakamori, Yuuki Tanaka, Azusa Kudo, Sae Morikami, Nao Iwanaga, Genki Akai, Nobutaka Shimizu, Takatoshi Arakawa, Chihaya Yamada, Kanefumi Kitahara, Katsunori Tanaka, Yukishige Ito, Shinya Fushinobu, Kiyotaka Fujita
Identification and characterization of endo-α-, exo-α-, and exo-β-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria. Nature communications 14 (1) (2023)
Michiko Shimokawa, Akihiro Ishiwata, Toma Kashima, Chiho Nakashima, Jiaman Li, Riku Fukushima, Naomi Sawai, Miku Nakamori, Yuuki Tanaka, Azusa Kudo, Sae Morikami, Nao Iwanaga, Genki Akai, Nobutaka Shimizu, Takatoshi Arakawa, Chihaya Yamada, Kanefumi Kitahara, Katsunori Tanaka, Yukishige Ito, Shinya Fushinobu, Kiyotaka Fujita
Author Correction: Identification and characterization of endo-α- exo-α-, and exo-β-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria. Nature communications 14 (1) (2023)
Toshihiko Katoh, Chihaya Yamada, Michael D Wallace, Ayako Yoshida, Aina Gotoh, Moe Arai, Takako Maeshibu, Toma Kashima, Arno Hagenbeek, Miriam Nozomi Ojima, Hiromi Takada, Mikiyasu Sakanaka, Hidenori Shimizu, Keita Nishiyama, Hisashi Ashida, Junko Hirose, Maria Suarez-Diez, Makoto Nishiyama, Ikuo Kimura, Keith A Stubbs, Shinya Fushinobu, Takane Katayama
A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem. Nature chemical biology (2023)
Takehiro Ito, Taisuke Kitaiwa, Kosuke Nishizono, Minori Umahashi, Shunsuke Miyaji, Shin-Ichiro Agake, Kana Kuwahara, Tadashi Yokoyama, Shinya Fushinobu, Akiko Maruyama-Nakashita, Ryosuke Sugiyama, Muneo Sato, Jun Inaba, Masami Yokota Hirai, Naoko Ohkama-Ohtsu
Glutathione degradation activity of γ-glutamyl peptidase 1 manifests its dual roles in primary and secondary sulfur metabolism in Arabidopsis. The Plant journal : for cell and molecular biology 111 (6) (2022)
Chihaya Yamada, Takane Katayama, Shinya Fushinobu
Crystal structures of glycoside hydrolase family 136 lacto-N-biosidases from monkey gut- and human adult gut bacteria. Bioscience, biotechnology, and biochemistry 86 (4) (2022)
Tatsuya Kondo, Miyu Kichijo, Makoto Nakaya, Shigeo Takenaka, Takatoshi Arakawa, Toshihisa Kotake, Shinya Fushinobu, Tatsuji Sakamoto
Biochemical and structural characterization of a novel 4-O-α-l-rhamnosyl-β-d-glucuronidase from Fusarium oxysporum. The FEBS journal 288 (16) (2021)
Shun Maruyama, Kota Sawano, Satoko Amaki, Takehiro Suzuki, Satoru Narita, Kenta Kimura, Takatoshi Arakawa, Chihaya Yamada, Yukishige Ito, Naoshi Dohmae, Kiyotaka Fujita, Akihiro Ishiwata, Shinya Fushinobu
Substrate complex structure, active site labeling and catalytic role of the zinc ion in cysteine glycosidase. Glycobiology (2021)
Nicholas G S McGregor, Joan Coines, Valentina Borlandelli, Satoko Amaki, Marta Artola, Alba Nin-Hill, Daniël Linzel, Chihaya Yamada, Takatoshi Arakawa, Akihiro Ishiwata, Yukishige Ito, Gijsbert A van der Marel, Jeroen D C Codée, Shinya Fushinobu, Herman S Overkleeft, Carme Rovira, Gideon J Davies
Cysteine Nucleophiles in Glycosidase Catalysis: Application of a Covalent β-l-Arabinofuranosidase Inhibitor. Angewandte Chemie (International ed. in English) 60 (11) (2021)
Masaki Kohno, Takatoshi Arakawa, Naoki Sunagawa, Tetsuya Mori, Kiyohiko Igarashi, Tomoyuki Nishimoto, Shinya Fushinobu
Molecular analysis of cyclic α-maltosyl-(1→6)-maltose binding protein in the bacterial metabolic pathway. PloS one 15 (11) (2020)
Danyao Du, Yohei Katsuyama, Masanobu Horiuchi, Shinya Fushinobu, Aochiu Chen, Tony D Davis, Michael D Burkart, Yasuo Ohnishi
Structural basis for selectivity in a highly reducing type II polyketide synthase. Nature chemical biology 16 (7) (2020)
Sayaka Shizukuishi, Michinaga Ogawa, Satoko Matsunaga, Mikado Tomokiyo, Tadayoshi Ikebe, Shinya Fushinobu, Akihide Ryo, Makoto Ohnishi
Streptococcus pneumoniae hijacks host autophagy by deploying CbpC as a decoy for Atg14 depletion. EMBO reports 21 (5) (2020)
Masayuki Miyake, Tohru Terada, Michiko Shimokawa, Naohisa Sugimoto, Takatoshi Arakawa, Kentaro Shimizu, Kiyohiko Igarashi, Kiyotaka Fujita, Shinya Fushinobu
Structural analysis of β-L-arabinobiose-binding protein in the metabolic pathway of hydroxyproline-rich glycoproteins in Bifidobacterium longum. The FEBS journal 287 (23) (2020)
Keita Saito, Alexander Holm Viborg, Shiho Sakamoto, Takatoshi Arakawa, Chihaya Yamada, Kiyotaka Fujita, Shinya Fushinobu
Crystal structure of β-L-arabinobiosidase belonging to glycoside hydrolase family 121. PloS one 15 (6) (2020)
Michael Jakob Pichler, Chihaya Yamada, Bashar Shuoker, María Camila Alvarez-Silva, Aina Gotoh, Maria Louise Leth, Erwin Schoof, Toshihiko Katoh, Mikiyasu Sakanaka, Takane Katayama, Chunsheng Jin, Niclas G Karlsson, Manimozhiyan Arumugam, Shinya Fushinobu, Maher Abou Hachem
Butyrate producing colonic Clostridiales metabolise human milk oligosaccharides and cross feed on mucin via conserved pathways. Nature communications 11 (1) (2020)
Yujiro Higuchi, Hitomi Matsufuji, Masanari Tanuma, Takatoshi Arakawa, Kazuki Mori, Chihaya Yamada, Risa Shofia, Emiko Matsunaga, Kosuke Tashiro, Shinya Fushinobu, Kaoru Takegawa
Author Correction: Identification and characterization of a novel β-D-galactosidase that releases pyruvylated galactose. Scientific reports 10 (1) (2020)
Young-Woo Nam, Mamoru Nishimoto, Takatoshi Arakawa, Motomitsu Kitaoka, Shinya Fushinobu
Structural basis for broad substrate specificity of UDP-glucose 4-epimerase in the human milk oligosaccharide catabolic pathway of Bifidobacterium longum. Scientific reports 9 (1) (2019)
Haruka Seki, Yibo Huang, Takatoshi Arakawa, Chihaya Yamada, Takashi Kinoshita, Shogo Iwamoto, Yujiro Higuchi, Kaoru Takegawa, Shinya Fushinobu
Structural basis for the specific cleavage of core-fucosylated N-glycans by endo-β-N-acetylglucosaminidase from the fungus Cordyceps militaris. The Journal of biological chemistry 294 (45) (2019)
Dohyun Im, Daisuke Matsui, Takatoshi Arakawa, Kimiyasu Isobe, Yasuhisa Asano, Shinya Fushinobu
Ligand complex structures of l-amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813 and its conformational change. FEBS open bio 8 (3) (2018)
Yujiro Higuchi, Hitomi Matsufuji, Masanari Tanuma, Takatoshi Arakawa, Kazuki Mori, Chihaya Yamada, Risa Shofia, Emiko Matsunaga, Kosuke Tashiro, Shinya Fushinobu, Kaoru Takegawa
Identification and characterization of a novel β-D-galactosidase that releases pyruvylated galactose. Scientific reports 8 (1) (2018)
Shinya Fushinobu
Conformations of the type-1 lacto-N-biose I unit in protein complex structures. Acta crystallographica. Section F, Structural biology communications 74 (Pt 8) (2018)
Koichi Abe, Naoki Sunagawa, Tohru Terada, Yuta Takahashi, Takatoshi Arakawa, Kiyohiko Igarashi, Masahiro Samejima, Hiroyuki Nakai, Hayao Taguchi, Masahiro Nakajima, Shinya Fushinobu
Structural and thermodynamic insights into β-1,2-glucooligosaccharide capture by a solute-binding protein in Listeria innocua. The Journal of biological chemistry 293 (23) (2018)
Masaki Kohno, Takatoshi Arakawa, Hiromi Ota, Tetsuya Mori, Tomoyuki Nishimoto, Shinya Fushinobu
Structural features of a bacterial cyclic α-maltosyl-(1→6)-maltose (CMM) hydrolase critical for CMM recognition and hydrolysis. The Journal of biological chemistry 293 (43) (2018)
Masayuki Sugiura, Moe Nakahara, Chihaya Yamada, Takatoshi Arakawa, Motomitsu Kitaoka, Shinya Fushinobu
Identification, functional characterization, and crystal structure determination of bacterial levoglucosan dehydrogenase. The Journal of biological chemistry 293 (45) (2018)
Koichi Abe, Masahiro Nakajima, Tetsuro Yamashita, Hiroki Matsunaga, Shinji Kamisuki, Takanori Nihira, Yuta Takahashi, Naohisa Sugimoto, Akimasa Miyanaga, Hiroyuki Nakai, Takatoshi Arakawa, Shinya Fushinobu, Hayao Taguchi
Biochemical and structural analyses of a bacterial endo-β-1,2-glucanase reveal a new glycoside hydrolase family. The Journal of biological chemistry 292 (18) (2017)
Dai Komiya, Akane Hori, Takuya Ishida, Kiyohiko Igarashi, Masahiro Samejima, Takuya Koseki, Shinya Fushinobu
Crystal Structure and Substrate Specificity Modification of Acetyl Xylan Esterase from Aspergillus luchuensis. Applied and environmental microbiology 83 (20) (2017)
Alexander Holm Viborg, Takane Katayama, Takatoshi Arakawa, Maher Abou Hachem, Leila Lo Leggio, Motomitsu Kitaoka, Birte Svensson, Shinya Fushinobu
Discovery of α-l-arabinopyranosidases from human gut microbiome expands the diversity within glycoside hydrolase family 42. The Journal of biological chemistry 292 (51) (2017)
Tomohiko Matsuzawa, Toshinori Jo, Taku Uchiyama, Jenny A Manninen, Takatoshi Arakawa, Kentaro Miyazaki, Shinya Fushinobu, Katsuro Yaoi
Crystal structure and identification of a key amino acid for glucose tolerance, substrate specificity, and transglycosylation activity of metagenomic β-glucosidase Td2F2. The FEBS journal 283 (12) (2016)
Young-Woo Nam, Takanori Nihira, Takatoshi Arakawa, Yuka Saito, Motomitsu Kitaoka, Hiroyuki Nakai, Shinya Fushinobu
Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes. The Journal of biological chemistry 290 (30) (2015)

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Publication Activity (10 Years)

Top Topics

Top Venues

Shinya Fushinobu