Tommi Vatanen

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 11

Top Topics

Microbial Community

Placebo Controlled

Ulcerative Colitis

Top Venues

Nature microbiology

Nature communications

Scientific reports

This page only lists publications with an associated author ORCID identifier.

Publications

Brooke C Wilson, José G B Derraik, Benjamin B Albert, Karen S W Leong, Ry Y Tweedie-Cullen, Christine Creagh, Marysia Depczynski, Taygen Edwards, Tommi Vatanen, Hiran Thabrew, Wayne S Cutfield, Justin Martin O'Sullivan
An open-label pilot trial of faecal microbiome transfer to restore the gut microbiome in anorexia nervosa: protocol. BMJ open 13 (7) (2023)
Joachim Johansen, Koji Atarashi, Yasumichi Arai, Nobuyoshi Hirose, Søren Johannes Sørensen, Tommi Vatanen, Olli H Laitinen, Kenya Honda, Ramnik J Xavier, Simon Rasmussen, Damian Rafal Plichta
Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan. Nature microbiology (2023)
Vladimir Gligorijević, P Douglas Renfrew, Tomasz Kosciolek, Julia Koehler Leman, Daniel Berenberg, Tommi Vatanen, Chris Chandler, Bryn C Taylor, Ian M Fisk, Hera Vlamakis, Ramnik J Xavier, Rob Knight, Kyunghyun Cho, Richard A Bonneau
Structure-based protein function prediction using graph convolutional networks. Nature communications 12 (1) (2021)
Clara Yieh Lin Chong, Tommi Vatanen, Mark H Oliver, Frank Harry Bloomfield, Justin Martin O'Sullivan
The microbial biogeography of the gastrointestinal tract of preterm and term lambs. Scientific reports 10 (1) (2020)
Karen S W Leong, Thilini N Jayasinghe, Brooke C Wilson, José G B Derraik, Benjamin B Albert, Valentina Chiavaroli, Darren M Svirskis, Kathryn Louise Beck, Cathryn A Conlon, Yannan Jiang, William Schierding, Tommi Vatanen, David J Holland, Justin Martin O'Sullivan, Wayne S Cutfield
High prevalence of undiagnosed comorbidities among adolescents with obesity. Scientific reports 10 (1) (2020)
Clara Yieh Lin Chong, David Orr, Lindsay D Plank, Tommi Vatanen, Justin Martin O'Sullivan, Rinki Murphy
Randomised Double-Blind Placebo-Controlled Trial of Inulin with Metronidazole in Non-Alcoholic Fatty Liver Disease (NAFLD). Nutrients 12 (4) (2020)
Lu Cheng, Siddharth Ramchandran, Tommi Vatanen, Niina Lietzén, Riitta Lahesmaa, Aki Vehtari, Harri Lähdesmäki
An additive Gaussian process regression model for interpretable non-parametric analysis of longitudinal data. Nature communications 10 (1) (2019)
Karen S W Leong, Thilini N Jayasinghe, José G B Derraik, Benjamin B Albert, Valentina Chiavaroli, Darren M Svirskis, Kathryn Louise Beck, Cathryn A Conlon, Yannan Jiang, William Schierding, Tommi Vatanen, David J Holland, Justin Martin O'Sullivan, Wayne S Cutfield
Protocol for the Gut Bugs Trial: a randomised double-blind placebo-controlled trial of gut microbiome transfer for the treatment of obesity in adolescents. BMJ open 9 (4) (2019)
Tommi Vatanen, Damian R Plichta, Juhi Somani, Philipp C Münch, Timothy D Arthur, Andrew Brantley Hall, Sabine Rudolf, Edward J Oakeley, Xiaobo Ke, Rachel A Young, Henry J Haiser, Raivo Kolde, Moran Yassour, Kristiina Luopajärvi, Heli Siljander, Suvi M Virtanen, Jorma Ilonen, Raivo Uibo, Vallo Tillmann, Sergei Mokurov, Natalya Dorshakova, Jeffrey A Porter, Alice Carolyn McHardy, Harri Lähdesmäki, Hera Vlamakis, Curtis Huttenhower, Olli H Laitinen, Ramnik J Xavier
Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life. Nature microbiology 4 (3) (2018)
Eric A Franzosa, Alexandra Sirota-Madi, Julian Avila-Pacheco, Nadine Fornelos, Henry J Haiser, Stefan Reinker, Tommi Vatanen, A Brantley Hall, Himel Mallick, Lauren J McIver, Jenny S Sauk, Robin G Wilson, Betsy W Stevens, Justin M Scott, Kerry Pierce, Amy A Deik, Kevin Bullock, Floris Imhann, Jeffrey A Porter, Alexandra Zhernakova, Jingyuan Fu, Rinse K Weersma, Cisca Wijmenga, Andrew T Chan, Hera Vlamakis, Curtis Huttenhower, Ramnik J Xavier
Gut microbiome structure and metabolic activity in inflammatory bowel disease. Nature microbiology 4 (2) (2018)
Soohong Kim, Joachim De Jonghe, Anthony B Kulesa, David Feldman, Tommi Vatanen, Roby P Bhattacharyya, Brittany Berdy, James Gomez, Jill Nolan, Slava Epstein, Paul C Blainey
High-throughput automated microfluidic sample preparation for accurate microbial genomics. Nature communications 8 (2017)