Damian Rafal Plichta (Damian R Plichta, Damian Plichta)

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 18

Top Topics

Immune Response

High Throughput

Dendritic Cells

Ulcerative Colitis

Top Venues

The Journal of experimental medicine

Nature microbiology

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Munehiro Furuichi, Takaaki Kawaguchi, Marie-Madlen Pust, Keiko Yasuma-Mitobe, Damian Rafal Plichta, Naomi Hasegawa, Takashi Ohya, Shakti K Bhattarai, Satoshi Sasajima, Yoshimasa Aoto, Timur Tuganbaev, Mizuki Yaginuma, Masahiro Ueda, Nobuyuki Okahashi, Kimiko Amafuji, Yuko Kiridoshi, Kayoko Sugita, Martin Stražar, Julian Avila Pacheco, Kerry Pierce, Andrew T Chan, Ashwin N Skelly, Masahira Hattori, Nobuhiro Nakamoto, Silvia Caballero, Jason M Norman, Bernat Olle, Takeshi Tanoue, Wataru Suda, Makoto Arita, Vanni Bucci, Koji Atarashi, Ramnik J Xavier, Kenya Honda
Commensal consortia decolonize Enterobacteriaceae via ecological control. Nature (2024)
Johannes F Scheid, Basak Eraslan, Andrew Hudak, Eric M Brown, Dallis Sergio, Toni Marie Delorey, Devan Phillips, Ariel Lefkovith, Alison T Jess, Lennard W Duck, Charles O Elson, Hera Vlamakis, Damian Rafal Plichta, Jacques Deguine, Ashwin N Ananthakrishnan, Daniel B Graham, Aviv Regev, Ramnik J Xavier
Remodeling of colon plasma cell repertoire within ulcerative colitis patients. The Journal of experimental medicine 220 (4) (2023)
Kenya Honda, Munehiro Furuichi, Takaaki Kawaguchi, Marie-Madlen Pust, Keiko Yasuma-Mitobe, Damian Rafal Plichta, Naomi Hasegawa, Takashi Ohya, Shakti Bhattarai, Satoshi Sasajima, Aoto Yoshimasa, Timur Tuganbaev, Mizuki Yaginuma, Masahiro Ueda, Nobuyuki Okahashi, Kimiko Amafuji, Yuuko Kiridooshi, Kayoko Sugita, Martin Stražar, Ashwin N Skelly, Wataru Suda, Masahira Hattori, Nobuhiro Nakamoto, Silvia Caballero, Jason M Norman, Bernat Olle, Takeshi Tanoue, Makoto Arita, Vanni Bucci, Koji Atarashi, Ramnik J Xavier
Rationally-defined microbial consortia suppress multidrug-resistant proinflammatory Enterobacteriaceae via ecological control. Research square (2023)
Joachim Johansen, Koji Atarashi, Yasumichi Arai, Nobuyoshi Hirose, Søren Johannes Sørensen, Tommi Vatanen, Olli H Laitinen, Kenya Honda, Ramnik J Xavier, Simon Rasmussen, Damian Rafal Plichta
Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan. Nature microbiology (2023)
Emily C Gentry, Stephanie L Collins, Morgan Panitchpakdi, Pedro Belda Ferre, Allison K Stewart, Marvic Carrillo Terrazas, Hsueh-Han Lu, Simone Zuffa, Tingting Yan, Julian Avila Pacheco, Damian Rafal Plichta, Allegra T Aron, Mingxun Wang, Alan K Jarmusch, Fuhua Hao, Mashette Syrkin-Nikolau, Hera Vlamakis, Ashwin N Ananthakrishnan, Brigid Boland, Amy Hemperly, Niels Vande Casteele, Frank J Gonzalez, Andrew T Chan, Ramnik J Xavier, Hiutung Chu, Erin S Baker, Andrew D Patterson, Rob Knight, Dionicio Siegel, Pieter C Dorrestein
Reverse metabolomics for the discovery of chemical structures from humans. Nature (2023)
Johannes F Scheid, Basak Eraslan, Andrew Hudak, Eric M Brown, Dallis Sergio, Toni Marie Delorey, Devan Phillips, Ariel Lefkovith, Alison T Jess, Lennard W Duck, Charles O Elson, Hera Vlamakis, Damian Rafal Plichta, Jacques Deguine, Ashwin N Ananthakrishnan, Daniel B Graham, Aviv Regev, Ramnik J Xavier
Remodeling of colon plasma cell repertoire within ulcerative colitis patients. The Journal of experimental medicine 220 (4) (2023)
Johannes F Scheid, Basak Eraslan, Andrew Hudak, Eric M Brown, Dallis Sergio, Toni Marie Delorey, Devan Phillips, Ariel Lefkovith, Alison T Jess, Lennard W Duck, Charles O Elson, Hera Vlamakis, Damian Rafal Plichta, Jacques Deguine, Ashwin N Ananthakrishnan, Daniel B Graham, Aviv Regev, Ramnik J Xavier
Remodeling of colon plasma cell repertoire within ulcerative colitis patients. The Journal of experimental medicine 220 (4) (2023)
Johannes F Scheid, Basak Eraslan, Andrew Hudak, Eric M Brown, Dallis Sergio, Toni Marie Delorey, Devan Phillips, Ariel Lefkovith, Alison T Jess, Lennard W Duck, Charles O Elson, Hera Vlamakis, Damian Rafal Plichta, Jacques Deguine, Ashwin N Ananthakrishnan, Daniel B Graham, Aviv Regev, Ramnik J Xavier
Remodeling of colon plasma cell repertoire within ulcerative colitis patients. The Journal of experimental medicine 220 (4) (2023)
Johannes F Scheid, Basak Eraslan, Andrew Hudak, Eric M Brown, Dallis Sergio, Toni Marie Delorey, Devan Phillips, Ariel Lefkovith, Alison T Jess, Lennard W Duck, Charles O Elson, Hera Vlamakis, Damian Rafal Plichta, Jacques Deguine, Ashwin N Ananthakrishnan, Daniel B Graham, Aviv Regev, Ramnik J Xavier
Remodeling of colon plasma cell repertoire within ulcerative colitis patients. The Journal of experimental medicine 220 (4) (2023)
Yancong Zhang, Amrisha Bhosle, Sena Bae, Lauren J McIver, Gleb Pishchany, Emma K Accorsi, Kelsey N Thompson, Cesar Arze, Ya Wang, Ayshwarya Subramanian, Sean M Kearney, April Pawluk, Damian Rafal Plichta, Gholamali Rahnavard, Afrah Shafquat, Ramnik J Xavier, Hera Vlamakis, Wendy S Garrett, Andy Krueger, Curtis Huttenhower, Eric A Franzosa
Discovery of bioactive microbial gene products in inflammatory bowel disease. Nature 606 (7915) (2022)
Youxian Li, Eiichiro Watanabe, Yusuke Kawashima, Damian Rafal Plichta, Zhujun Wang, Makoto Ujike, Qi Yan Ang, Runrun Wu, Munehiro Furuichi, Kozue Takeshita, Koji Yoshida, Keita Nishiyama, Sean M Kearney, Wataru Suda, Masahira Hattori, Satoshi Sasajima, Takahiro Matsunaga, Xiaoxi Zhang, Kazuto Watanabe, Jun Fujishiro, Jason M Norman, Bernat Olle, Shutoku Matsuyama, Ho Namkoong, Yoshifumi Uwamino, Makoto Ishii, Koichi Fukunaga, Naoki Hasegawa, Osamu Ohara, Ramnik J Xavier, Koji Atarashi, Kenya Honda
Identification of trypsin-degrading commensals in the large intestine. Nature 609 (7927) (2022)
Joachim Johansen, Damian Rafal Plichta, Jakob Nybo Nissen, Marie Louise Jespersen, Shiraz A Shah, Ling Deng, Jessica Lasky-Su, Hans Bisgaard, Dennis Sandris Nielsen, Søren Johannes Sørensen, Simon Rasmussen
Genome binning of viral entities from bulk metagenomics data. Nature communications 13 (1) (2022)
Yuko Sato, Koji Atarashi, Damian Rafal Plichta, Yasumichi Arai, Satoshi Sasajima, Sean M Kearney, Wataru Suda, Kozue Takeshita, Takahiro Sasaki, Shoki Okamoto, Ashwin N Skelly, Yuki Okamura, Hera Vlamakis, Youxian Li, Takeshi Tanoue, Hajime Takei, Hiroshi Nittono, Seiko Narushima, Junichiro Irie, Hiroshi Itoh, Kyoji Moriya, Yuki Sugiura, Makoto Suematsu, Nobuko Moritoki, Shinsuke Shibata, Dan R Littman, Michael A Fischbach, Yoshifumi Uwamino, Takashi Inoue, Akira Honda, Masahira Hattori, Tsuyoshi Murai, Ramnik J Xavier, Nobuyoshi Hirose, Kenya Honda
Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians. Nature 599 (7885) (2021)
Eduard Ansaldo, Leianna C Slayden, Krystal L Ching, Meghan A Koch, Natalie K Wolf, Damian Rafal Plichta, Eric M Brown, Daniel B Graham, Ramnik J Xavier, James J Moon, Gregory M Barton
Akkermansia muciniphila induces intestinal adaptive immune responses during homeostasis. Science (New York, N.Y.) 364 (6446) (2020)
Xiaofang Jiang, A Brantley Hall, Timothy D Arthur, Damian Rafal Plichta, Christian T Covington, Mathilde Poyet, Jessica Crothers, Peter L Moses, Andrew C Tolonen, Hera Vlamakis, Eric John Alm, Ramnik J Xavier
Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut. Science (New York, N.Y.) 363 (6423) (2019)
Gareth Frank Difford, Damian Rafal Plichta, Peter Løvendahl, Jan Lassen, Samantha Joan Noel, Ole Højberg, André-Denis G Wright, Zhigang Zhu, Lise Kristensen, Henrik Bjørn Nielsen, Bernt Guldbrandtsen, Goutam Sahana
Host genetics and the rumen microbiome jointly associate with methane emissions in dairy cows. PLoS genetics 14 (10) (2018)
Damian Rafal Plichta, Agnieszka Sierakowska Juncker, Marcelo Bertalan, Elizabeth Rettedal, Laurent Gautier, Encarna Varela, Chaysavanh Manichanh, Charlène Fouqueray, Florence Levenez, Trine Nielsen, Joël Doré, Ana Manuel Dantas Machado, Mari Cristina Rodriguez de Evgrafov, Torben Hansen, Torben Jørgensen, Peer Bork, Francisco Guarner, Oluf Pedersen, null null, Morten Otto Alexander Sommer, S Dusko Ehrlich, Thomas Sicheritz-Pontén, Søren Brunak, H Bjørn Nielsen
Transcriptional interactions suggest niche segregation among microorganisms in the human gut. Nature microbiology 1 (11) (2016)
Henrik Munch Roager, Lea B S Hansen, Martin I Bahl, Henrik L Frandsen, Vera Carvalho, Rikke J Gøbel, Marlene D Dalgaard, Damian Rafal Plichta, Morten H Sparholt, Henrik Vestergaard, Torben Hansen, Thomas Sicheritz-Pontén, H Bjørn Nielsen, Oluf Pedersen, Lotte Lauritzen, Mette Kristensen, Ramneek Gupta, Tine Rask Licht
Colonic transit time is related to bacterial metabolism and mucosal turnover in the gut. Nature microbiology 1 (9) (2016)