Hera Vlamakis

Publication Activity (10 Years)

Years Active: 2019-2023
Publications (10 Years): 19

Top Topics

Dendritic Cells

High Throughput Sequencing

Microbial Community

Top Venues

The Journal of experimental medicine

Nature communications

Science advances

This page only lists publications with an associated author ORCID identifier.

Publications

Johannes F Scheid, Basak Eraslan, Andrew Hudak, Eric M Brown, Dallis Sergio, Toni Marie Delorey, Devan Phillips, Ariel Lefkovith, Alison T Jess, Lennard W Duck, Charles O Elson, Hera Vlamakis, Damian Rafal Plichta, Jacques Deguine, Ashwin N Ananthakrishnan, Daniel B Graham, Aviv Regev, Ramnik J Xavier
Remodeling of colon plasma cell repertoire within ulcerative colitis patients. The Journal of experimental medicine 220 (4) (2023)
Robert Lyle McPherson, Christine R Isabella, Rebecca L Walker, Dallis Sergio, Sunhee Bae, Tony Gaca, Smrithi Raman, Le Thanh Tu Nguyen, Darryl A Wesener, Melanie Halim, Michael G Wuo, Amanda Dugan, Robert Kerby, Soumi Ghosh, Federico E Rey, Catherine Dhennezel, Gleb Pishchany, Valerie Lensch, Hera Vlamakis, Eric John Alm, Ramnik J Xavier, Laura L Kiessling
Lectin-Seq: A method to profile lectin-microbe interactions in native communities. Science advances 9 (30) (2023)
Emily C Gentry, Stephanie L Collins, Morgan Panitchpakdi, Pedro Belda Ferre, Allison K Stewart, Marvic Carrillo Terrazas, Hsueh-Han Lu, Simone Zuffa, Tingting Yan, Julian Avila Pacheco, Damian Rafal Plichta, Allegra T Aron, Mingxun Wang, Alan K Jarmusch, Fuhua Hao, Mashette Syrkin-Nikolau, Hera Vlamakis, Ashwin N Ananthakrishnan, Brigid Boland, Amy Hemperly, Niels Vande Casteele, Frank J Gonzalez, Andrew T Chan, Ramnik J Xavier, Hiutung Chu, Erin S Baker, Andrew D Patterson, Rob Knight, Dionicio Siegel, Pieter C Dorrestein
Reverse metabolomics for the discovery of chemical structures from humans. Nature (2023)
Johannes F Scheid, Basak Eraslan, Andrew Hudak, Eric M Brown, Dallis Sergio, Toni Marie Delorey, Devan Phillips, Ariel Lefkovith, Alison T Jess, Lennard W Duck, Charles O Elson, Hera Vlamakis, Damian Rafal Plichta, Jacques Deguine, Ashwin N Ananthakrishnan, Daniel B Graham, Aviv Regev, Ramnik J Xavier
Remodeling of colon plasma cell repertoire within ulcerative colitis patients. The Journal of experimental medicine 220 (4) (2023)
Johannes F Scheid, Basak Eraslan, Andrew Hudak, Eric M Brown, Dallis Sergio, Toni Marie Delorey, Devan Phillips, Ariel Lefkovith, Alison T Jess, Lennard W Duck, Charles O Elson, Hera Vlamakis, Damian Rafal Plichta, Jacques Deguine, Ashwin N Ananthakrishnan, Daniel B Graham, Aviv Regev, Ramnik J Xavier
Remodeling of colon plasma cell repertoire within ulcerative colitis patients. The Journal of experimental medicine 220 (4) (2023)
Johannes F Scheid, Basak Eraslan, Andrew Hudak, Eric M Brown, Dallis Sergio, Toni Marie Delorey, Devan Phillips, Ariel Lefkovith, Alison T Jess, Lennard W Duck, Charles O Elson, Hera Vlamakis, Damian Rafal Plichta, Jacques Deguine, Ashwin N Ananthakrishnan, Daniel B Graham, Aviv Regev, Ramnik J Xavier
Remodeling of colon plasma cell repertoire within ulcerative colitis patients. The Journal of experimental medicine 220 (4) (2023)
Johannes F Scheid, Basak Eraslan, Andrew Hudak, Eric M Brown, Dallis Sergio, Toni Marie Delorey, Devan Phillips, Ariel Lefkovith, Alison T Jess, Lennard W Duck, Charles O Elson, Hera Vlamakis, Damian Rafal Plichta, Jacques Deguine, Ashwin N Ananthakrishnan, Daniel B Graham, Aviv Regev, Ramnik J Xavier
Remodeling of colon plasma cell repertoire within ulcerative colitis patients. The Journal of experimental medicine 220 (4) (2023)
Victoria M Martin, Yamini V Virkud, Ehud Dahan, Hannah L Seay, Dvir Itzkovits, Hera Vlamakis, Ramnik J Xavier, Wayne G Shreffler, Qian Yuan, Moran Yassour
Longitudinal disease-associated gut microbiome differences in infants with food protein-induced allergic proctocolitis. Microbiome 10 (1) (2022)
Donggi Paik, Lina Yao, Yancong Zhang, Sena Bae, Gabriel D D'Agostino, Minghao Zhang, Eunha Kim, Eric A Franzosa, Julian Avila Pacheco, Jordan E Bisanz, Christopher K Rakowski, Hera Vlamakis, Ramnik J Xavier, Peter J Turnbaugh, Randy S Longman, Michael R Krout, Andrew T Chan, Fraydoon Rastinejad, Curtis Huttenhower, Jun R Huh, A Sloan Devlin
Human gut bacteria produce Τ Η 17-modulating bile acid metabolites. Nature 603 (7903) (2022)
Yancong Zhang, Amrisha Bhosle, Sena Bae, Lauren J McIver, Gleb Pishchany, Emma K Accorsi, Kelsey N Thompson, Cesar Arze, Ya Wang, Ayshwarya Subramanian, Sean M Kearney, April Pawluk, Damian Rafal Plichta, Gholamali Rahnavard, Afrah Shafquat, Ramnik J Xavier, Hera Vlamakis, Wendy S Garrett, Andy Krueger, Curtis Huttenhower, Eric A Franzosa
Discovery of bioactive microbial gene products in inflammatory bowel disease. Nature 606 (7915) (2022)
Munhyung Bae, Chelsi D Cassilly, Xiaoxi Liu, Sung-Moo Park, Betsabeh Khoramian Tusi, Xiangjun Chen, Jaeyoung Kwon, Pavel Filipčík, Andrew S Bolze, Zehua Liu, Hera Vlamakis, Daniel B Graham, Sara J Buhrlage, Ramnik J Xavier, Jon Clardy
Akkermansia muciniphila phospholipid induces homeostatic immune responses. Nature 608 (7921) (2022)
Jose D Pagan, Hera Vlamakis, Anthony Gaca, Ramnik J Xavier, Robert M Anthony
Modulating T Follicular Cells In Vivo Enhances Antigen-Specific Humoral Immunity. Journal of immunology (Baltimore, Md. : 1950) 206 (11) (2021)
Vladimir Gligorijević, P Douglas Renfrew, Tomasz Kosciolek, Julia Koehler Leman, Daniel Berenberg, Tommi Vatanen, Chris Chandler, Bryn C Taylor, Ian M Fisk, Hera Vlamakis, Ramnik J Xavier, Rob Knight, Kyunghyun Cho, Richard A Bonneau
Structure-based protein function prediction using graph convolutional networks. Nature communications 12 (1) (2021)
Martin Stražar, Godfrey S Temba, Hera Vlamakis, Vesla I Kullaya, Furaha S Lyamuya, Blandina Theophil Mmbaga, Leo A B Joosten, Andre J A M van der Ven, Mihai M Netea, Quirijn de Mast, Ramnik J Xavier
Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations. Nature communications 12 (1) (2021)
Martin Stražar, Godfrey S Temba, Hera Vlamakis, Vesla I Kullaya, Furaha S Lyamuya, Blandina Theophil Mmbaga, Leo A B Joosten, Andre J A M van der Ven, Mihai M Netea, Quirijn de Mast, Ramnik J Xavier
Publisher Correction: Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations. Nature communications 12 (1) (2021)
Yuko Sato, Koji Atarashi, Damian Rafal Plichta, Yasumichi Arai, Satoshi Sasajima, Sean M Kearney, Wataru Suda, Kozue Takeshita, Takahiro Sasaki, Shoki Okamoto, Ashwin N Skelly, Yuki Okamura, Hera Vlamakis, Youxian Li, Takeshi Tanoue, Hajime Takei, Hiroshi Nittono, Seiko Narushima, Junichiro Irie, Hiroshi Itoh, Kyoji Moriya, Yuki Sugiura, Makoto Suematsu, Nobuko Moritoki, Shinsuke Shibata, Dan R Littman, Michael A Fischbach, Yoshifumi Uwamino, Takashi Inoue, Akira Honda, Masahira Hattori, Tsuyoshi Murai, Ramnik J Xavier, Nobuyoshi Hirose, Kenya Honda
Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians. Nature 599 (7885) (2021)
Martin Stražar, Godfrey S Temba, Hera Vlamakis, Vesla I Kullaya, Furaha S Lyamuya, Blandina Theophil Mmbaga, Leo A B Joosten, Andre J A M van der Ven, Mihai M Netea, Quirijn de Mast, Ramnik J Xavier
Author Correction: Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations. Nature communications 12 (1) (2021)
Nadine Fornelos, Eric A Franzosa, Jason D Bishai, John W Annand, Akihiko Oka, Jason Lloyd-Price, Timothy D Arthur, Ashley Garner, Julian Avila-Pacheco, Henry J Haiser, Andrew C Tolonen, Jeffrey A Porter, Andrew T Chan, R Balfour Sartor, Curtis Huttenhower, Hera Vlamakis, Ramnik J Xavier
Growth effects of N-acylethanolamines on gut bacteria reflect altered bacterial abundances in inflammatory bowel disease. Nature microbiology 5 (3) (2020)
Xiaofang Jiang, A Brantley Hall, Timothy D Arthur, Damian Rafal Plichta, Christian T Covington, Mathilde Poyet, Jessica Crothers, Peter L Moses, Andrew C Tolonen, Hera Vlamakis, Eric John Alm, Ramnik J Xavier
Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut. Science (New York, N.Y.) 363 (6423) (2019)