Xiaoyang Zhang

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 27

Top Topics

Genome Wide Association

Transcription Factor

Histone Deacetylase

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Cancer research

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Ansley Gnanapragasam, Eftyhios Kirbizakis, Anna Li, Kyle H White, Katelyn L Mortenson, Juliana Cavalcante de Moura, Wajih Jawhar, Yifei Yan, Reilly Falter, Colleen Russett, Betty Giannias, Sophie Camilleri-Broët, Nicholas R Bertos, Jonathan Cools-Lartigue, Livia Garzia, Veena Sangwan, Lorenzo E Ferri, Xiaoyang Zhang, Swneke D Bailey
HiChIP-Based Epigenomic Footprinting Identifies a Promoter Variant of UXS1 That Confers Genetic Susceptibility to Gastroesophageal Cancer. Cancer research 84 (14) (2024)
Amir Pozner, Li Li, Shiv Prakash Verma, Shuxin Wang, Jared J Barrott, Mary L Nelson, Jamie S E Yu, Gian Luca Negri, Shane Colborne, Christopher S Hughes, Ju-Fen Zhu, Sydney L Lambert, Lara S Carroll, Kyllie Smith-Fry, Michael G Stewart, Sarmishta Kannan, Bodrie Jensen, Cini Mathew John, Saif Sikdar, Hongrui Liu, Ngoc Ha Dang, Jennifer Bourdage, Jinxiu Li, Jeffery M Vahrenkamp, Katelyn L Mortenson, John S Groundland, Rosanna Wustrack, Donna L Senger, Franz J Zemp, Douglas J Mahoney, Jason Gertz, Xiaoyang Zhang, Alexander J F Lazar, Martin Hirst, Gregg B Morin, Torsten O Nielsen, Peter S Shen, Kevin B Jones
ASPSCR1-TFE3 reprograms transcription by organizing enhancer loops around hexameric VCP/p97. Nature communications 15 (1) (2024)
Ansley Gnanapragasam, Eftyhios Kirbizakis, Anna Li, Kyle H White, Katelyn L Mortenson, Juliana Cavalcante de Moura, Wajih Jawhar, Yifei Yan, Reilly Falter, Colleen Russett, Betty Giannias, Sophie Camilleri-Broët, Nicholas R Bertos, Jonathan Cools-Lartigue, Livia Garzia, Veena Sangwan, Lorenzo E Ferri, Xiaoyang Zhang, Swneke D Bailey
HiChIP-based Epigenomic Footprinting Identifies a Promoter Variant of UXS1 that Confers Genetic Susceptibility to Gastroesophageal Cancer. Cancer research (2024)
Ansley Gnanapragasam, Eftyhios Kirbizakis, Anna Li, Kyle H White, Katelyn L Mortenson, Juliana Cavalcante de Moura, Wajih Jawhar, Yifei Yan, Reilly Falter, Colleen Russett, Betty Giannias, Sophie Camilleri-Broët, Nicholas R Bertos, Jonathan Cools-Lartigue, Livia Garzia, Veena Sangwan, Lorenzo E Ferri, Xiaoyang Zhang, Swneke D Bailey
HiChIP-Based Epigenomic Footprinting Identifies a Promoter Variant of UXS1 That Confers Genetic Susceptibility to Gastroesophageal Cancer. Cancer research 84 (14) (2024)
Hosiana Abewe, Alexandra Richey, Jeffery M Vahrenkamp, Matthew Ginley-Hidinger, Craig M Rush, Noel Kitchen, Xiaoyang Zhang, Jason Gertz
Estrogen-induced chromatin looping changes identify a subset of functional regulatory elements. bioRxiv : the preprint server for biology (2024)
Katelyn L Mortenson, Courtney Dawes, Emily R Wilson, Nathan E Patchen, Hailey E Johnson, Jason Gertz, Swneke D Bailey, Yang Liu, Katherine E Varley, Xiaoyang Zhang
3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression. bioRxiv : the preprint server for biology (2024)
Ansley Gnanapragasam, Eftyhios Kirbizakis, Anna Li, Kyle H White, Katelyn L Mortenson, Juliana Cavalcante de Moura, Wajih Jawhar, Yifei Yan, Reilly Falter, Colleen Russett, Betty Giannias, Sophie Camilleri-Broët, Nicholas R Bertos, Jonathan Cools-Lartigue, Livia Garzia, Veena Sangwan, Lorenzo E Ferri, Xiaoyang Zhang, Swneke D Bailey
HiChIP-Based Epigenomic Footprinting Identifies a Promoter Variant of UXS1 That Confers Genetic Susceptibility to Gastroesophageal Cancer. Cancer research 84 (14) (2024)
Katelyn L Mortenson, Courtney Dawes, Emily R Wilson, Nathan E Patchen, Hailey E Johnson, Jason Gertz, Swneke D Bailey, Yang Liu, Katherine E Varley, Xiaoyang Zhang
3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression. bioRxiv : the preprint server for biology (2024)
Katelyn L Mortenson, Courtney Dawes, Emily R Wilson, Nathan E Patchen, Hailey E Johnson, Jason Gertz, Swneke D Bailey, Yang Liu, Katherine E Varley, Xiaoyang Zhang
3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression. Nature communications 15 (1) (2024)
Katelyn L Mortenson, Courtney Dawes, Emily R Wilson, Nathan E Patchen, Hailey E Johnson, Jason Gertz, Swneke D Bailey, Yang Liu, Katherine E Varley, Xiaoyang Zhang
3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression. bioRxiv : the preprint server for biology (2024)
Amir Pozner, Li Li, Shiv Prakash Verma, Shuxin Wang, Jared J Barrott, Mary L Nelson, Jamie S E Yu, Gian Luca Negri, Shane Colborne, Christopher S Hughes, Ju-Fen Zhu, Sydney L Lambert, Lara S Carroll, Kyllie Smith-Fry, Michael G Stewart, Sarmishta Kannan, Bodrie Jensen, Cini Mathew John, Saif Sikdar, Hongrui Liu, Ngoc Ha Dang, Jennifer Bourdage, Jinxiu Li, Jeffery M Vahrenkamp, Katelyn L Mortenson, John S Groundland, Rosanna Wustrack, Donna L Senger, Franz J Zemp, Douglas J Mahoney, Jason Gertz, Xiaoyang Zhang, Alexander J F Lazar, Martin Hirst, Gregg B Morin, Torsten O Nielsen, Peter S Shen, Kevin B Jones
ASPSCR1-TFE3 reprograms transcription by organizing enhancer loops around hexameric VCP/p97. Nature communications 15 (1) (2024)
Katelyn L Mortenson, Courtney Dawes, Emily R Wilson, Nathan Patchen, Hailey E Johnson, Jason Gertz, Swneke D Bailey, Yang Liu, Katherine E Varley, Xiaoyang Zhang
3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression. bioRxiv : the preprint server for biology (2024)
Hosiana Abewe, Alexandra Richey, Jeffery M Vahrenkamp, Matthew Ginley-Hidinger, Craig M Rush, Noel Kitchen, Xiaoyang Zhang, Jason Gertz
Estrogen-induced chromatin looping changes identify a subset of functional regulatory elements. bioRxiv : the preprint server for biology (2024)
Katelyn L Mortenson, Courtney Dawes, Emily R Wilson, Nathan E Patchen, Hailey E Johnson, Jason Gertz, Swneke D Bailey, Yang Liu, Katherine E Varley, Xiaoyang Zhang
3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression. Nature communications 15 (1) (2024)
Katelyn L Mortenson, Courtney Dawes, Emily R Wilson, Nathan E Patchen, Hailey E Johnson, Jason Gertz, Swneke D Bailey, Yang Liu, Katherine E Varley, Xiaoyang Zhang
3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression. Nature communications 15 (1) (2024)
Katelyn L Mortenson, Courtney Dawes, Emily R Wilson, Nathan E Patchen, Hailey E Johnson, Jason Gertz, Swneke D Bailey, Yang Liu, Katherine E Varley, Xiaoyang Zhang
3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression. bioRxiv : the preprint server for biology (2024)
Hosiana Abewe, Alexandra Richey, Jeffery M Vahrenkamp, Matthew Ginley-Hidinger, Craig M Rush, Noel Kitchen, Xiaoyang Zhang, Jason Gertz
Estrogen-induced chromatin looping changes identify a subset of functional regulatory elements. bioRxiv : the preprint server for biology (2024)
Amir Pozner, Li Li, Shiv Prakash Verma, Shuxin Wang, Jared J Barrott, Mary L Nelson, Jamie S E Yu, Gian Luca Negri, Shane Colborne, Christopher S Hughes, Ju-Fen Zhu, Sydney L Lambert, Lara S Carroll, Kyllie Smith-Fry, Michael G Stewart, Sarmishta Kannan, Bodrie Jensen, Cini Mathew John, Saif Sikdar, Hongrui Liu, Ngoc Ha Dang, Jennifer Bourdage, Jinxiu Li, Jeffery M Vahrenkamp, Katelyn L Mortenson, John S Groundland, Rosanna Wustrack, Donna L Senger, Franz J Zemp, Douglas J Mahoney, Jason Gertz, Xiaoyang Zhang, Alexander J F Lazar, Martin Hirst, Gregg B Morin, Torsten O Nielsen, Peter S Shen, Kevin B Jones
ASPSCR1-TFE3 reprograms transcription by organizing enhancer loops around hexameric VCP/p97. Nature communications 15 (1) (2024)
Amir Pozner, Li Li, Shiv Prakash Verma, Shuxin Wang, Jared J Barrott, Mary L Nelson, Jamie S E Yu, Gian Luca Negri, Shane Colborne, Christopher S Hughes, Ju-Fen Zhu, Sydney L Lambert, Lara S Carroll, Kyllie Smith-Fry, Michael G Stewart, Sarmishta Kannan, Bodrie Jensen, Cini Mathew John, Saif Sikdar, Hongrui Liu, Ngoc Ha Dang, Jennifer Bourdage, Jinxiu Li, Jeffery M Vahrenkamp, Katelyn L Mortenson, John S Groundland, Rosanna Wustrack, Donna L Senger, Franz J Zemp, Douglas J Mahoney, Jason Gertz, Xiaoyang Zhang, Alexander J F Lazar, Martin Hirst, Gregg B Morin, Torsten O Nielsen, Peter S Shen, Kevin B Jones
ASPSCR1-TFE3 reprograms transcription by organizing enhancer loops around hexameric VCP/p97. Nature communications 15 (1) (2024)
Katelyn L Mortenson, Courtney Dawes, Emily R Wilson, Nathan E Patchen, Hailey E Johnson, Jason Gertz, Swneke D Bailey, Yang Liu, Katherine E Varley, Xiaoyang Zhang
3D genomic analysis reveals novel enhancer-hijacking caused by complex structural alterations that drive oncogene overexpression. Nature communications 15 (1) (2024)
Amir Pozner, Li Li, Shiv Prakash Verma, Shuxin Wang, Jared J Barrott, Mary L Nelson, Jamie S E Yu, Gian Luca Negri, Shane Colborne, Christopher S Hughes, Ju-Fen Zhu, Sydney L Lambert, Lara S Carroll, Kyllie Smith-Fry, Michael G Stewart, Sarmishta Kannan, Bodrie Jensen, Cini Mathew John, Saif Sikdar, Hongrui Liu, Ngoc Ha Dang, Jennifer Bourdage, Jinxiu Li, Jeffery M Vahrenkamp, Katelyn L Mortenson, John S Groundland, Rosanna Wustrack, Donna L Senger, Franz J Zemp, Douglas J Mahoney, Jason Gertz, Xiaoyang Zhang, Alexander J F Lazar, Martin Hirst, Gregg B Morin, Torsten O Nielsen, Peter S Shen, Kevin B Jones
ASPSCR1-TFE3 reprograms transcription by organizing enhancer loops around hexameric VCP/p97. Nature communications 15 (1) (2024)
Gongwei Wu, Noriaki Yoshida, Jihe Liu, Xiaoyang Zhang, Yuan Xiong, Tayla B Heavican-Foral, Elisa Mandato, Huiyun Liu, Geoffrey M Nelson, Lu Yang, Renee Chen, Katherine Aleisha Donovan, Marcus Kenneth Jones, Mikhail Roshal, Yanming Zhang, Ran Xu, Ajit J Nirmal, Salvia Jain, Catharine Leahy, Kristen L Jones, Kristen E Stevenson, Natasha Galasso, Nivetha Ganesan, Tiffany Chang, Wen-Chao Wu, Abner Louissaint, Lydie Debaize, Hojong Yoon, Paola Dal Cin, Wing C Chan, Shannan Ho Sui, Samuel Y Ng, Andrew L Feldman, Steven M Horwitz, Karen Adelman, Eric S Fischer, Chun-Wei David Chen, David M Weinstock, Myles A Brown
TP63 fusions drive multicomplex enhancer rewiring, lymphomagenesis, and EZH2 dependence. Science translational medicine 15 (714) (2023)
Zhaowei Chu, Lei Gu, Yeguang Hu, Xiaoyang Zhang, Man Li, Jiajia Chen, Da Teng, Man Huang, Che-Hung Shen, Li Cai, Yeguang Hu, Yifeng Qi, Zhixin Niu, Austin Feng, Songmei Geng, Dennie T Frederick, Emma Specht, Adriano Piris, Ryan J Sullivan, Keith T Flaherty, Genevieve M Boland, Katia Georgopoulos, David Liu, Yang Shi, Bin Zheng
STAG2 regulates interferon signaling in melanoma via enhancer loop reprogramming. Nature communications 13 (1) (2022)
Ke Li, Xufen Zheng, Hua Tang, Yuan-Sheng Zang, Chunling Zeng, Xiaoxiao Liu, Yanying Shen, Yuzhi Pang, Simin Wang, Feifei Xie, Xiaojing Lu, Yuxiang Luo, Zhang Li, Wenbo Bi, Xiaona Jia, Tao Huang, Rongqiang Wei, Kenan Huang, Zihao Chen, Qingchen Zhu, Yi He, Miaoying Zhang, Zhizhan Gu, Yi-Chuan Xiao, Xiaoyang Zhang, Jonathan A Fletcher, Yuexiang Wang
E3 ligase MKRN3 is a tumor suppressor regulating PABPC1 ubiquitination in non-small cell lung cancer. The Journal of experimental medicine 218 (8) (2021)
Yanli Liu, Zhong Wu, Jin Zhou, Dinesh K A Ramadurai, Katelyn L Mortenson, Estrella Aguilera-Jimenez, Yifei Yan, Xiaojun Yang, Alison M Taylor, Katherine E Varley, Jason Gertz, Peter S Choi, Andrew D Cherniak, Xingdong Chen, Adam J Bass, Swneke D Bailey, Xiaoyang Zhang
A predominant enhancer co-amplified with the SOX2 oncogene is necessary and sufficient for its expression in squamous cancer. Nature communications 12 (1) (2021)
Zhong Wu, Jin Zhou, Xiaoyang Zhang, Zhouwei Zhang, Yingtian Xie, Jie Bin Liu, Zandra V Ho, Arpit Panda, Xintao Qiu, Paloma Cejas, Israel Cañadas, Fahire Goknur Akarca, James M McFarland, Ankur K Nagaraja, Louisa B Goss, Nikolas Kesten, Longlong Si, Klothilda Lim, Yanli Liu, Yanxi Zhang, Ji Yeon Baek, Yang Liu, Deepa T Patil, Jonathan P Katz, Josephine Hai, Chunyang Bao, Matthew Stachler, Jun Qi, Jeffrey J Ishizuka, Hiroshi Nakagawa, Anil K Rustgi, Kwok-Kin Wong, Matthew Meyerson, David A Barbie, Myles Brown, Henry W Long, Adam J Bass
Reprogramming of the esophageal squamous carcinoma epigenome by SOX2 promotes ADAR1 dependence. Nature genetics 53 (6) (2021)
Paula Llabata, Manuel Torres-Diz, Antonio Gómez, Laureano Tomás-Daza, Octavio A Romero, Joaquím Grego-Bessa, Pere Llinas-Arias, Alfonso Valencia, Manel Esteller, Biola-Maria Javierre, Xiaoyang Zhang, Montse Sanchez-Cespedes
MAX mutant small-cell lung cancers exhibit impaired activities of MGA-dependent noncanonical polycomb repressive complex. Proceedings of the National Academy of Sciences of the United States of America 118 (37) (2021)