Yu-Shan Lin

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 32

Top Venues

Science advances

The journal of physical chemistry. B

Journal of chemical information and modeling

eLife

Tufts University

University of Wisconsin Madison (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Tufts University Jul 01 2018

United States

Associate Professor :: Chemistry

Tufts University Sep 01 2012 - Jun 30 2018

United States

Assistant Professor :: Chemistry

Education History

University of Wisconsin Madison Aug 27 2007 - Aug 23 2009

United States

PHD :: Chemistry

University of Wisconsin Madison Sep 01 2004 - Aug 26 2007

United States

MSC :: Chemistry

Publications

Jimin Yoon, Yu Meng Zhang, Cheenou Her, Robert A Grant, Anna I Ponomarenko, Bryce E Ackermann, Tiffani Hui, Yu-Shan Lin, Galia T Debelouchina, Matthew D Shoulders
The immune-evasive proline-283 substitution in influenza nucleoprotein increases aggregation propensity without altering the native structure. Science advances 10 (16) (2024)
Jimin Yoon, Yu Meng Zhang, Cheenou Her, Robert A Grant, Anna I Ponomarenko, Bryce E Ackermann, Tiffani Hui, Yu-Shan Lin, Galia T Debelouchina, Matthew D Shoulders
The immune-evasive proline-283 substitution in influenza nucleoprotein increases aggregation propensity without altering the native structure. Science advances 10 (16) (2024)
Jimin Yoon, Yu Meng Zhang, Cheenou Her, Robert A Grant, Anna I Ponomarenko, Bryce E Ackermann, Tiffani Hui, Yu-Shan Lin, Galia T Debelouchina, Matthew D Shoulders
The immune-evasive proline-283 substitution in influenza nucleoprotein increases aggregation propensity without altering the native structure. Science advances 10 (16) (2024)
Jiayuan Miao, Arghya Pratim Ghosh, Minh Ngoc Ho, Chengxi Li, Xuejian Huang, Bradley L Pentelute, James D Baleja, Yu-Shan Lin
Assessing the Performance of Peptide Force Fields for Modeling the Solution Structural Ensembles of Cyclic Peptides. The journal of physical chemistry. B 128 (22) (2024)
Jiayuan Miao, Arghya Pratim Ghosh, Minh Ngoc Ho, Chengxi Li, Xuejian Huang, Bradley L Pentelute, James D Baleja, Yu-Shan Lin
Assessing the Performance of Peptide Force Fields for Modeling the Solution Structural Ensembles of Cyclic Peptides. The journal of physical chemistry. B 128 (22) (2024)
Jimin Yoon, Yu Meng Zhang, Cheenou Her, Robert A Grant, Anna I Ponomarenko, Bryce E Ackermann, Tiffani Hui, Yu-Shan Lin, Galia T Debelouchina, Matthew D Shoulders
The immune-evasive proline-283 substitution in influenza nucleoprotein increases aggregation propensity without altering the native structure. Science advances 10 (16) (2024)
Jimin Yoon, Yu Meng Zhang, Cheenou Her, Robert A Grant, Anna I Ponomarenko, Bryce E Ackermann, Tiffani Hui, Yu-Shan Lin, Galia T Debelouchina, Matthew D Shoulders
The immune-evasive proline-283 substitution in influenza nucleoprotein increases aggregation propensity without altering the native structure. Science advances 10 (16) (2024)
Jiayuan Miao, Arghya Pratim Ghosh, Minh Ngoc Ho, Chengxi Li, Xuejian Huang, Bradley L Pentelute, James D Baleja, Yu-Shan Lin
Assessing the Performance of Peptide Force Fields for Modeling the Solution Structural Ensembles of Cyclic Peptides. The journal of physical chemistry. B 128 (22) (2024)
Jimin Yoon, Yu Meng Zhang, Cheenou Her, Robert A Grant, Anna I Ponomarenko, Bryce E Ackermann, Tiffani Hui, Yu-Shan Lin, Galia T Debelouchina, Matthew D Shoulders
The immune-evasive proline-283 substitution in influenza nucleoprotein increases aggregation propensity without altering the native structure. Science advances 10 (16) (2024)
Jiayuan Miao, Arghya Pratim Ghosh, Minh Ngoc Ho, Chengxi Li, Xuejian Huang, Bradley L Pentelute, James D Baleja, Yu-Shan Lin
Assessing the Performance of Peptide Force Fields for Modeling the Solution Structural Ensembles of Cyclic Peptides. The journal of physical chemistry. B (2024)
Jiayuan Miao, Arghya Pratim Ghosh, Minh Ngoc Ho, Chengxi Li, Xuejian Huang, Bradley L Pentelute, James D Baleja, Yu-Shan Lin
Assessing the Performance of Peptide Force Fields for Modeling the Solution Structural Ensembles of Cyclic Peptides. The journal of physical chemistry. B 128 (22) (2024)
Francini Fonseca Lopez, Jiayuan Miao, Jovan Damjanovic, Luca Bischof, Michael B Braun, Yingjie Ling, Marcus D Hartmann, Yu-Shan Lin, Joshua A Kritzer
Computational Prediction of Cyclic Peptide Structural Ensembles and Application to the Design of Keap1 Binders. Journal of chemical information and modeling (2023)
Jeffrey Y-K Wong, Arunika I Ekanayake, Serhii Kharchenko, Steven E Kirberger, Ryan Qiu, Payam Kelich, Susmita Sarkar, Jianqian Li, Kleinberg X Fernandez, Edgar R Alvizo-Paez, Jiayuan Miao, Shiva Kalhor-Monfared, J Dwyer John, Hongsuk Kang, Hwanho Choi, John M Nuss, John C Vederas, Yu-Shan Lin, Matthew Scott Macauley, Lela Vukovic, William C K Pomerantz, Ratmir Derda
Genetically encoded discovery of perfluoroaryl macrocycles that bind to albumin and exhibit extended circulation in vivo. Nature communications 14 (1) (2023)
Jeffrey Y-K Wong, Arunika I Ekanayake, Serhii Kharchenko, Steven E Kirberger, Ryan Qiu, Payam Kelich, Susmita Sarkar, Jiaqian Li, Kleinberg X Fernandez, Edgar R Alvizo-Paez, Jiayuan Miao, Shiva Kalhor-Monfared, J Dwyer John, Hongsuk Kang, Hwanho Choi, John M Nuss, John C Vederas, Yu-Shan Lin, Matthew Scott Macauley, Lela Vukovic, William C K Pomerantz, Ratmir Derda
Author Correction: Genetically encoded discovery of perfluoroaryl macrocycles that bind to albumin and exhibit extended circulation in vivo. Nature communications 14 (1) (2023)
Tiffani Hui, Marc L Descoteaux, Jiayuan Miao, Yu-Shan Lin
Training Neural Network Models Using Molecular Dynamics Simulation Results to Efficiently Predict Cyclic Hexapeptide Structural Ensembles. Journal of chemical theory and computation (2023)
Jennifer C Mortensen, Jovan Damjanovic, Jiayuan Miao, Tiffani Hui, Yu-Shan Lin
A backbone-dependent rotamer library with high (ϕ, ψ) coverage using metadynamics simulations. Protein science : a publication of the Protein Society 31 (12) (2022)
Jimin Yoon, Emmanuel E Nekongo, Jessica E Patrick, Tiffani Hui, Angela M Phillips, Anna I Ponomarenko, Samuel J Hendel, Rebecca M Sebastian, Yu Meng Zhang, Vincent L Butty, C Brandon Ogbunugafor, Yu-Shan Lin, Matthew D Shoulders
The endoplasmic reticulum proteostasis network profoundly shapes the protein sequence space accessible to HIV envelope. PLoS biology 20 (2) (2022)
Jiayuan Miao, Marc L Descoteaux, Yu-Shan Lin
Structure prediction of cyclic peptides by molecular dynamics + machine learning. Chemical science 12 (44) (2021)
Jovan Damjanovic, Jiayuan Miao, He Huang, Yu-Shan Lin
Elucidating Solution Structures of Cyclic Peptides Using Molecular Dynamics Simulations. Chemical reviews 121 (4) (2021)
Kamlesh M Makwana, Matthew P Sarnowski, Jiayuan Miao, Yu-Shan Lin, Juan R Del Valle
N-Amination Converts Amyloidogenic Tau Peptides into Soluble Antagonists of Cellular Seeding. ACS chemical neuroscience 12 (20) (2021)
Jennifer R Pace, Bryan J Lampkin, Charles Abakah, Adam Moyer, Jiayuan Miao, Kirsten Deprey, Robert A Cerulli, Yu-Shan Lin, James D Baleja, David Baker, Joshua A Kritzer
Stapled β-Hairpins Featuring 4-Mercaptoproline. Journal of the American Chemical Society 143 (37) (2021)
Jovan Damjanovic, James M Murphy, Yu-Shan Lin
CATBOSS: Cluster Analysis of Trajectories Based on Segment Splitting. Journal of chemical information and modeling 61 (10) (2021)
Jeffrey Y-K Wong, Raja Mukherjee, Jiayuan Miao, Olena Bilyk, Vivian Triana, Mark Miskolzie, Antoine Henninot, John J Dwyer, Serhii Kharchenko, Anna Iampolska, Dmitriy M Volochnyuk, Yu-Shan Lin, Lynne-Marie Postovit, Ratmir Derda
Genetically-encoded discovery of proteolytically stable bicyclic inhibitors for morphogen NODAL. Chemical science 12 (28) (2021)
Diana P Slough, Sean M McHugh, Ashleigh E Cummings, Peng Dai, Bradley L Pentelute, Joshua A Kritzer, Yu-Shan Lin
Designing Well-Structured Cyclic Pentapeptides Based on Sequence-Structure Relationships. The journal of physical chemistry. B 122 (14) (2018)
Angela M Phillips, Michael B Doud, Luna O Gonzalez, Vincent L Butty, Yu-Shan Lin, Jesse D Bloom, Matthew D Shoulders
Enhanced ER proteostasis and temperature differentially impact the mutational tolerance of influenza hemagglutinin. eLife 7 (2018)
Diana P Slough, Hongtao Yu, Sean M McHugh, Yu-Shan Lin
Toward accurately modeling N-methylated cyclic peptides. Physical chemistry chemical physics : PCCP 19 (7) (2018)
Angela M Phillips, Anna I Ponomarenko, Kenny Chen, Orr Ashenberg, Jiayuan Miao, Sean M McHugh, Vincent L Butty, Charles A Whittaker, Christopher L Moore, Jesse D Bloom, Yu-Shan Lin, Matthew D Shoulders
Destabilized adaptive influenza variants critical for innate immune system escape are potentiated by host chaperones. PLoS biology 16 (9) (2018)
Sean M McHugh, Hongtao Yu, Diana P Slough, Yu-Shan Lin
Mapping the sequence-structure relationships of simple cyclic hexapeptides. Physical chemistry chemical physics : PCCP 19 (4) (2018)
Diana P Slough, Sean M McHugh, Yu-Shan Lin
Understanding and designing head-to-tail cyclic peptides. Biopolymers 109 (10) (2018)
Angela M Phillips, Luna O Gonzalez, Emmanuel E Nekongo, Anna I Ponomarenko, Sean M McHugh, Vincent L Butty, Stuart S Levine, Yu-Shan Lin, Leonid A Mirny, Matthew D Shoulders
Host proteostasis modulates influenza evolution. eLife 6 (2017)
Julia R Rogers, Sean M McHugh, Yu-Shan Lin
Predictions for α-Helical Glycopeptide Design from Structural Bioinformatics Analysis. Journal of chemical information and modeling 57 (10) (2017)
Surin K Mong, Frank V Cochran, Hongtao Yu, Zachary Graziano, Yu-Shan Lin, Jennifer R Cochran, Bradley L Pentelute
Heterochiral Knottin Protein: Folding and Solution Structure. Biochemistry 56 (43) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Yu-Shan Lin