Yuanning Li

Loop profile Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 21

Top Venues

Molecular biology and evolution

Science (New York, N.Y.)

bioRxiv : the preprint server for biology

PLoS biology

Auburn University (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Auburn University Aug 07 2012

United States

PHD :: Biological Sciences

Publications

Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob Lucas Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts. Science (New York, N.Y.) 384 (6694) (2024)
Jinwu He, Jun Li, Ru Zhang, Zhiwei Dong, Guichun Liu, Zhou Chang, Wenxuan Bi, Yongying Ruan, Yuxia Yang, Haoyu Liu, Lu Qiu, Ruoping Zhao, Wenting Wan, Zihe Li, Lei Chen, Yuanning Li, Xue-Yan Li
Multiple Origins of Bioluminescence in Beetles and Evolution of Luciferase Function. Molecular biology and evolution 41 (1) (2024)
Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob Lucas Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts. Science (New York, N.Y.) 384 (6694) (2024)
Chao Liu, Xiao-Fan Zhou, Yuanning Li, Chris Todd Hittinger, Ronghui Pan, Jinyan Huang, Xue-Xin Chen, Antonis Rokas, Yun Chen, Xing-Xing Shen
The influence of the number of tree searches on maximum likelihood inference in phylogenomics. Systematic biology (2024)
Jinwu He, Jun Li, Ru Zhang, Zhiwei Dong, Guichun Liu, Zhou Chang, Wenxuan Bi, Yongying Ruan, Yuxia Yang, Haoyu Liu, Lu Qiu, Ruoping Zhao, Wenting Wan, Zihe Li, Lei Chen, Yuanning Li, Xue-Yan Li
Multiple origins of bioluminescence in beetles and evolution of luciferase function. Molecular biology and evolution (2024)
Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob Lucas Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts. Science (New York, N.Y.) 384 (6694) (2024)
Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob Lucas Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts. Science (New York, N.Y.) 384 (6694) (2024)
Hongyue Liu, Jacob L Steenwyk, Xiaofan Zhou, Darrin T Schultz, Kevin M Kocot, Xing-Xing Shen, Antonis Rokas, Yuanning Li
A taxon-rich and genome-scale phylogeny of Opisthokonta. PLoS biology 22 (9) (2024)
Bo Feng, Yonglin Li, Hongyue Liu, Jacob Lucas Steenwyk, Kyle T David, Xiaolin Tian, Biyang Xu, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Shengyuan Shao, Zhaohao Chen, Kaitlin J Fisher, Marizeth Groenewald, Chris Todd Hittinger, Xing-Xing Shen, Antonis Rokas, Xiao-Fan Zhou, Yuanning Li
Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage. bioRxiv : the preprint server for biology (2024)
Jinwu He, Jun Li, Ru Zhang, Zhiwei Dong, Guichun Liu, Zhou Chang, Wenxuan Bi, Yongying Ruan, Yuxia Yang, Haoyu Liu, Lu Qiu, Ruoping Zhao, Wenting Wan, Zihe Li, Lei Chen, Yuanning Li, Xue-Yan Li
Multiple Origins of Bioluminescence in Beetles and Evolution of Luciferase Function. Molecular biology and evolution 41 (1) (2024)
Bo Feng, Yonglin Li, Hongyue Liu, Jacob Lucas Steenwyk, Kyle T David, Xiaolin Tian, Biyang Xu, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Shengyuan Shao, Zhaohao Chen, Kaitlin J Fisher, Marizeth Groenewald, Chris Todd Hittinger, Xing-Xing Shen, Antonis Rokas, Xiao-Fan Zhou, Yuanning Li
Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage. bioRxiv : the preprint server for biology (2024)
Jacob Lucas Steenwyk, Yuanning Li, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas
Incongruence in the phylogenomics era. Nature reviews. Genetics (2023)
Yuanning Li, Xing-Xing Shen, Benjamin Evans, Casey W Dunn, Antonis Rokas
Rooting the Animal Tree of Life. Molecular biology and evolution 38 (10) (2022)
Jacob Lucas Steenwyk, Thomas J Buida, Carla Gonçalves, Dayna C Goltz, Grace Morales, Matthew E Mead, Abigail Leavitt LaBella, Christina M Chavez, Jonathan E Schmitz, Maria Hadjifrangiskou, Yuanning Li, Antonis Rokas
BioKIT: a versatile toolkit for processing and analyzing diverse types of sequence data. Genetics 221 (3) (2022)
Yuanning Li, Marvin A Altamia, J Reuben Shipway, Mercer R Brugler, Angelo Fraga Bernardino, Thaís Lima de Brito, Zhenjian Lin, Francisca Andréa da Silva Oliveira, Paulo Sumida, Craig R Smith, Amaro Emiliano Trindade Silva, Kenneth M Halanych, Daniel L Distel
Contrasting modes of mitochondrial genome evolution in sister taxa of wood-eating marine bivalves (Teredinidae and Xylophagaidae). Genome biology and evolution (2022)
Xing-Xing Shen, Yuanning Li, Chris Todd Hittinger, Xue-Xin Chen, Antonis Rokas
An investigation of irreproducibility in maximum likelihood phylogenetic inference. Nature communications 11 (1) (2020)
Yuanning Li, Kyle T David, Xing-Xing Shen, Jacob Lucas Steenwyk, Kenneth M Halanych, Antonis Rokas
Feature frequency profile-based phylogenies are inaccurate. Proceedings of the National Academy of Sciences of the United States of America 117 (50) (2020)
Xing-Xing Shen, Jacob Lucas Steenwyk, Abigail Leavitt LaBella, Dana A Opulente, Xiaofan Zhou, Jacek Kominek, Yuanning Li, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota. Science advances 6 (45) (2020)
Jacob Lucas Steenwyk, Thomas J Buida, Yuanning Li, Xing-Xing Shen, Antonis Rokas
ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference. PLoS biology 18 (12) (2020)
Yuanning Li, Michael G Tassia, Damien S Waits, Viktoria E Bogantes, Kyle T David, Kenneth M Halanych
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi. BMC biology 17 (1) (2019)
Yuanning Li, Mark R Liles, Kenneth M Halanych
Endosymbiont genomes yield clues of tubeworm success. The ISME journal 12 (11) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Yuanning Li