Xing-Xing Shen (Xingxing Shen)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 60

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

bioRxiv : the preprint server for biology

Environmental microbiology

Molecular biology and evolution

Zhejiang University

Sun Yat-Sen University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Zhejiang University Dec 03 2019

China

Assistant Professor :: Institute of Insect Sciences

Vanderbilt University Dec 01 2014 - Nov 30 2019

United States

PostDoctoral Fellow :: Biological Science

Education History

Sun Yat-Sen University Sep 01 2009 - Jun 28 2014

China

PHD :: School of Life Science

Hainan University Sep 01 2005 - Jun 30 2009

China

BSC :: School of Agriculture

Publications

Marie-Claire Harrison, Emily J Ubbelohde, Abigail L LaBella, Dana A Opulente, John F Wolters, Xiaofan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Machine learning enables identification of an alternative yeast galactose utilization pathway. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Mei Tao, Jiani Chen, Chunlai Cui, Yandong Xu, Jingxiu Xu, Zheyi Shi, Jiaqi Yun, Junwei Zhang, Guo-Zheng Ou, Chao Liu, Yun Chen, Zeng-Rong Zhu, Ronghui Pan, Suhong Xu, Xue-Xin Chen, Antonis Rokas, Yang Zhao, Sibao Wang, Jian-Hua Huang, Xing-Xing Shen
Identification of a longevity gene through evolutionary rate covariation of insect mito-nuclear genomes. Nature aging 4 (8) (2024)
Wen-Qiu Wang, Xiao-Fen Liu, Yong-Jing Zhu, Jia-Zhen Zhu, Chao Liu, Zhi-Ye Wang, Xing-Xing Shen, Andrew C Allan, Xue-Ren Yin
Identification of miRNA858 long-loop precursors in seed plants. The Plant cell 36 (5) (2024)
Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob Lucas Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts. Science (New York, N.Y.) 384 (6694) (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob Lucas Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts. Science (New York, N.Y.) 384 (6694) (2024)
Chao Liu, Xiao-Fan Zhou, Yuanning Li, Chris Todd Hittinger, Ronghui Pan, Jinyan Huang, Xue-Xin Chen, Antonis Rokas, Yun Chen, Xing-Xing Shen
The influence of the number of tree searches on maximum likelihood inference in phylogenomics. Systematic biology (2024)
Bryan Zavala, Lauren Dineen, Kaitlin J Fisher, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xing-Xing Shen, Xiao-Fan Zhou, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas, Abigail Leavitt LaBella
Genomic factors shaping codon usage across the Saccharomycotina subphylum. bioRxiv : the preprint server for biology (2024)
Kyle T David, Joshua G Schraiber, Johnathan G Crandall, Abigail Leavitt LaBella, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Matt Pennell, Antonis Rokas
Convergent expansions of keystone gene families drive metabolic innovation in a major eukaryotic clade. bioRxiv : the preprint server for biology (2024)
Wen-Qiu Wang, Xiao-Fen Liu, Yong-Jing Zhu, Jia-Zhen Zhu, Chao Liu, Zhi-Ye Wang, Xing-Xing Shen, Andrew C Allan, Xue-Ren Yin
Identification of miRNA858 long-loop precursors in seed plants. The Plant cell 36 (5) (2024)
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marizeth Groenewald, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas, Chris Todd Hittinger
Functional and Evolutionary Integration of a Fungal Gene With a Bacterial Operon. Molecular biology and evolution 41 (4) (2024)
Wen-Qiu Wang, Xiao-Fen Liu, Yong-Jing Zhu, Jia-Zhen Zhu, Chao Liu, Zhi-Ye Wang, Xing-Xing Shen, Andrew C Allan, Xue-Ren Yin
Identification of miRNA858 long-loop precursors in seed plants. The Plant cell 36 (5) (2024)
Marie-Claire Harrison, Emily J Ubbelohde, Abigail L LaBella, Dana A Opulente, John F Wolters, Xiaofan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Machine learning enables identification of an alternative yeast galactose utilization pathway. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Robert E Jones, Alexander K Tice, Marek Eliáš, Laura Eme, Martin Kolísko, Serafim Nenarokov, Tomáš Pánek, Antonis Rokas, Eric D Salomaki, Jürgen F H Strassert, Xing-Xing Shen, David Zihala, Matthew W Brown
Create, Analyze, and Visualize Phylogenomic Datasets Using PhyloFisher. Current protocols 4 (1) (2024)
Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob Lucas Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts. Science (New York, N.Y.) 384 (6694) (2024)
Kyle T David, Joshua G Schraiber, Johnathan G Crandall, Abigail Leavitt LaBella, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Matt Pennell, Antonis Rokas
Convergent expansions of keystone gene families drive metabolic innovation in a major eukaryotic clade. bioRxiv : the preprint server for biology (2024)
Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob Lucas Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts. Science (New York, N.Y.) 384 (6694) (2024)
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marizeth Groenewald, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas, Chris Todd Hittinger
Functional and Evolutionary Integration of a Fungal Gene With a Bacterial Operon. Molecular biology and evolution 41 (4) (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marizeth Groenewald, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas, Chris Todd Hittinger
Functional and evolutionary integration of a fungal gene with a bacterial operon. Molecular biology and evolution (2024)
Bryan Zavala, Lauren Dineen, Kaitlin J Fisher, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xing-Xing Shen, Xiao-Fan Zhou, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas, Abigail Leavitt LaBella
Genomic factors shaping codon usage across the Saccharomycotina subphylum. G3 (Bethesda, Md.) (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marizeth Groenewald, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas, Chris Todd Hittinger
Functional and evolutionary integration of a fungal gene with a bacterial operon. Molecular biology and evolution (2024)
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marizeth Groenewald, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas, Chris Todd Hittinger
Functional and Evolutionary Integration of a Fungal Gene With a Bacterial Operon. Molecular biology and evolution 41 (4) (2024)
Jun-Jie Wu, Qian-Wen Deng, Yi-Yang Qiu, Chao Liu, Chen-Feng Lin, Ya-Lu Ru, Yue Sun, Jun Lai, Lu-Xian Liu, Xing-Xing Shen, Ronghui Pan, Yun-Peng Zhao
Post-transfer adaptation of HGT-acquired genes and contribution to guanine metabolic diversification in land plants. The New phytologist (2024)
Bryan Zavala, Lauren Dineen, Kaitlin J Fisher, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xing-Xing Shen, Xiao-Fan Zhou, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas, Abigail Leavitt LaBella
Genomic factors shaping codon usage across the Saccharomycotina subphylum. G3 (Bethesda, Md.) (2024)
Bo Feng, Yonglin Li, Hongyue Liu, Jacob Lucas Steenwyk, Kyle T David, Xiaolin Tian, Biyang Xu, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Shengyuan Shao, Zhaohao Chen, Kaitlin J Fisher, Marizeth Groenewald, Chris Todd Hittinger, Xing-Xing Shen, Antonis Rokas, Xiao-Fan Zhou, Yuanning Li
Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage. bioRxiv : the preprint server for biology (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Kyle T David, Joshua G Schraiber, Johnathan G Crandall, Abigail Leavitt LaBella, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Matt Pennell, Antonis Rokas
Convergent expansions of keystone gene families drive metabolic innovation in a major eukaryotic clade. bioRxiv : the preprint server for biology (2024)
Mei Tao, Jiani Chen, Chunlai Cui, Yandong Xu, Jingxiu Xu, Zheyi Shi, Jiaqi Yun, Junwei Zhang, Guo-Zheng Ou, Chao Liu, Yun Chen, Zeng-Rong Zhu, Ronghui Pan, Suhong Xu, Xue-Xin Chen, Antonis Rokas, Yang Zhao, Sibao Wang, Jian-Hua Huang, Xing-Xing Shen
Identification of a longevity gene through evolutionary rate covariation of insect mito-nuclear genomes. Nature aging (2024)
Marie-Claire Harrison, Emily J Ubbelohde, Abigail L LaBella, Dana A Opulente, John F Wolters, Xiaofan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Machine learning enables identification of an alternative yeast galactose utilization pathway. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Robert E Jones, Alexander K Tice, Marek Eliáš, Laura Eme, Martin Kolísko, Serafim Nenarokov, Tomáš Pánek, Antonis Rokas, Eric D Salomaki, Jürgen F H Strassert, Xing-Xing Shen, David Zihala, Matthew W Brown
Create, Analyze, and Visualize Phylogenomic Datasets Using PhyloFisher. Current protocols 4 (1) (2024)
Marie-Claire Harrison, Emily J Ubbelohde, Abigail L LaBella, Dana A Opulente, John F Wolters, Xiaofan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Machine learning enables identification of an alternative yeast galactose utilization pathway. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Bo Feng, Yonglin Li, Hongyue Liu, Jacob Lucas Steenwyk, Kyle T David, Xiaolin Tian, Biyang Xu, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Shengyuan Shao, Zhaohao Chen, Kaitlin J Fisher, Marizeth Groenewald, Chris Todd Hittinger, Xing-Xing Shen, Antonis Rokas, Xiao-Fan Zhou, Yuanning Li
Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage. bioRxiv : the preprint server for biology (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Bryan Zavala, Lauren Dineen, Kaitlin J Fisher, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xing-Xing Shen, Xiao-Fan Zhou, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas, Abigail Leavitt LaBella
Genomic factors shaping codon usage across the Saccharomycotina subphylum. bioRxiv : the preprint server for biology (2024)
Jacob Lucas Steenwyk, Yuanning Li, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas
Incongruence in the phylogenomics era. Nature reviews. Genetics (2023)
Wen-Qiu Wang, Xiao-Fen Liu, Yong-Jing Zhu, Jia-Zhen Zhu, Chao Liu, Zhi-Ye Wang, Xing-Xing Shen, Andrew C Allan, Xue-Ren Yin
Identification of miRNA858 long-loop precursors in seed plants. The Plant cell (2023)
Carla Gonçalves, Marie-Claire Harrison, Jacob Lucas Steenwyk, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Diverse signatures of convergent evolution in cacti-associated yeasts. bioRxiv : the preprint server for biology (2023)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy longstanding macroecological patterns. bioRxiv : the preprint server for biology (2023)
Yuanning Li, Xing-Xing Shen, Benjamin Evans, Casey W Dunn, Antonis Rokas
Rooting the Animal Tree of Life. Molecular biology and evolution 38 (10) (2022)
Qianwen Deng, He Li, Yanlei Feng, Ruonan Xu, Weiran Li, Rui Zhu, Delara Akhter, Xing-Xing Shen, Jianping Hu, Hangjin Jiang, Ronghui Pan
Defining upstream enhancing and inhibiting sequence patterns for plant peroxisome targeting signal type 1 using large-scale in silico and in vivo analyses. The Plant journal : for cell and molecular biology 111 (2) (2022)
Chao Liu, Yang Li, Yun Chen, Xue-Xin Chen, Jianhua Huang, Antonis Rokas, Xing-Xing Shen
How has horizontal gene transfer shaped the evolution of insect genomes? Environmental microbiology 25 (3) (2022)
Chao Liu, Yang Li, Yun Chen, Xue-Xin Chen, Jianhua Huang, Antonis Rokas, Xing-Xing Shen
How has horizontal gene transfer shaped the evolution of insect genomes? Environmental microbiology 25 (3) (2022)
Chao Liu, Yang Li, Yun Chen, Xue-Xin Chen, Jianhua Huang, Antonis Rokas, Xing-Xing Shen
How has horizontal gene transfer shaped the evolution of insect genomes? Environmental microbiology 25 (3) (2022)
Megan A Phillips, Jacob Lucas Steenwyk, Xing-Xing Shen, Antonis Rokas
Examination of Gene Loss in the DNA Mismatch Repair Pathway and Its Mutational Consequences in a Fungal Phylum. Genome biology and evolution 13 (10) (2022)
Chao Liu, Yang Li, Yun Chen, Xue-Xin Chen, Jianhua Huang, Antonis Rokas, Xing-Xing Shen
How has horizontal gene transfer shaped the evolution of insect genomes? Environmental microbiology (2022)
Chao Liu, Yang Li, Yun Chen, Xue-Xin Chen, Jianhua Huang, Antonis Rokas, Xing-Xing Shen
How has horizontal gene transfer shaped the evolution of insect genomes? Environmental microbiology 25 (3) (2022)
Chao Liu, Yang Li, Yun Chen, Xue-Xin Chen, Jianhua Huang, Antonis Rokas, Xing-Xing Shen
How has horizontal gene transfer shaped the evolution of insect genomes? Environmental microbiology (2022)
Liu Chao, Yang Li, Yun Chen, Xue-Xin Chen, Jianhua Huang, Antonis Rokas, Xing-Xing Shen
How has HGT shaped the evolution of insect genomes? Environmental microbiology (2022)
Chao Liu, Yang Li, Yun Chen, Xue-Xin Chen, Jianhua Huang, Antonis Rokas, Xing-Xing Shen
How has horizontal gene transfer shaped the evolution of insect genomes? Environmental microbiology 25 (3) (2022)
Sunde Xu, Yong-Xin Liu, Tomislav Cernava, Hongkai Wang, Yaqi Zhou, Tie Xia, Shugeng Cao, Gabriele Berg, Xing-Xing Shen, Ziyue Wen, Chunshun Li, Baoyuan Qu, Hefei Ruan, Yunrong Chai, Xueping Zhou, Zhonghua Ma, Yan Shi, Yunlong Yu, Yang Bai, Yun Chen
Fusarium fruiting body microbiome member Pantoea agglomerans inhibits fungal pathogenesis by targeting lipid rafts. Nature microbiology 7 (6) (2022)
Chao Liu, Yang Li, Yun Chen, Xue-Xin Chen, Jianhua Huang, Antonis Rokas, Xing-Xing Shen
How has horizontal gene transfer shaped the evolution of insect genomes? Environmental microbiology 25 (3) (2022)
Xing-Xing Shen, Yuanning Li, Chris Todd Hittinger, Xue-Xin Chen, Antonis Rokas
An investigation of irreproducibility in maximum likelihood phylogenetic inference. Nature communications 11 (1) (2020)
Yuanning Li, Kyle T David, Xing-Xing Shen, Jacob Lucas Steenwyk, Kenneth M Halanych, Antonis Rokas
Feature frequency profile-based phylogenies are inaccurate. Proceedings of the National Academy of Sciences of the United States of America 117 (50) (2020)
Xing-Xing Shen, Jacob Lucas Steenwyk, Abigail Leavitt LaBella, Dana A Opulente, Xiaofan Zhou, Jacek Kominek, Yuanning Li, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota. Science advances 6 (45) (2020)
Jacob Lucas Steenwyk, Xing-Xing Shen, Abigail L Lind, Gustavo Henrique Goldman, Antonis Rokas
A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera Aspergillus and Penicillium. mBio 10 (4) (2019)
Jacob Lucas Steenwyk, Dana A Opulente, Jacek Kominek, Xing-Xing Shen, Xiao-Fan Zhou, Abigail Leavitt LaBella, Noah P Bradley, Brandt F Eichman, Neža Čadež, Diego Libkind, Jeremy DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, Chris Todd Hittinger, Antonis Rokas
Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts. PLoS biology 17 (5) (2019)
Tadeusz Krassowski, Aisling Y Coughlan, Xing-Xing Shen, Xiaofan Zhou, Jacek Kominek, Dana A Opulente, Robert Riley, Igor V Grigoriev, Nikunj Maheshwari, Denis C Shields, Cletus P Kurtzman, Chris Todd Hittinger, Antonis Rokas, Kenneth H Wolfe
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts. Nature communications 9 (1) (2018)

Xing-Xing Shen.css-eqlu8i{font-size:small;padding-left:4px;} (Xingxing Shen)

Publication Activity (10 Years)

Top Topics

Top Venues

Xing-Xing Shen (Xingxing Shen)