Chris Todd Hittinger (Chris T Hittinger)

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 95

Top Topics

Machine Learning

Saccharomyces Cerevisiae

Top Venues

bioRxiv : the preprint server for biology

Proceedings of the National Academy of Sciences of the United States of America

Yeast (Chichester, England)

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Marie-Claire Harrison, Emily J Ubbelohde, Abigail L LaBella, Dana A Opulente, John F Wolters, Xiaofan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Machine learning enables identification of an alternative yeast galactose utilization pathway. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob Lucas Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts. Science (New York, N.Y.) 384 (6694) (2024)
Julie Rojas, James Hose, H Auguste Dutcher, Michael Place, John F Wolters, Chris Todd Hittinger, Audrey P Gasch
Comparative modeling reveals the molecular determinants of aneuploidy fitness cost in a wild yeast model. bioRxiv : the preprint server for biology (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Johnathan G Crandall, Xiao-Fan Zhou, Antonis Rokas, Chris Todd Hittinger
Specialization restricts the evolutionary paths available to yeast sugar transporters. bioRxiv : the preprint server for biology (2024)
Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob Lucas Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts. Science (New York, N.Y.) 384 (6694) (2024)
Chao Liu, Xiao-Fan Zhou, Yuanning Li, Chris Todd Hittinger, Ronghui Pan, Jinyan Huang, Xue-Xin Chen, Antonis Rokas, Yun Chen, Xing-Xing Shen
The influence of the number of tree searches on maximum likelihood inference in phylogenomics. Systematic biology (2024)
Bryan Zavala, Lauren Dineen, Kaitlin J Fisher, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xing-Xing Shen, Xiao-Fan Zhou, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas, Abigail Leavitt LaBella
Genomic factors shaping codon usage across the Saccharomycotina subphylum. bioRxiv : the preprint server for biology (2024)
Kyle T David, Joshua G Schraiber, Johnathan G Crandall, Abigail Leavitt LaBella, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Matt Pennell, Antonis Rokas
Convergent expansions of keystone gene families drive metabolic innovation in a major eukaryotic clade. bioRxiv : the preprint server for biology (2024)
Christina M Chavez, Marizeth Groenewald, Amanda B Hulfachor, Gideon Kpurubu, Rene Huerta, Chris Todd Hittinger, Antonis Rokas
The cell morphological diversity of Saccharomycotina yeasts. FEMS yeast research 24 (2024)
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marizeth Groenewald, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas, Chris Todd Hittinger
Functional and Evolutionary Integration of a Fungal Gene With a Bacterial Operon. Molecular biology and evolution 41 (4) (2024)
Christina M Chavez, Marizeth Groenewald, Amanda B Hulfachor, Gideon Kpurubu, Rene Huerta, Chris Todd Hittinger, Antonis Rokas
The cell morphological diversity of Saccharomycotina yeasts. FEMS yeast research 24 (2024)
Christina M Chavez, Marizeth Groenewald, Amanda B Hulfachor, Gideon Kpurubu, Rene Huerta, Chris Todd Hittinger, Antonis Rokas
The cell morphological diversity of Saccharomycotina yeasts. FEMS yeast research 24 (2024)
Marie-Claire Harrison, Emily J Ubbelohde, Abigail L LaBella, Dana A Opulente, John F Wolters, Xiaofan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Machine learning enables identification of an alternative yeast galactose utilization pathway. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob Lucas Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts. Science (New York, N.Y.) 384 (6694) (2024)
Kyle T David, Joshua G Schraiber, Johnathan G Crandall, Abigail Leavitt LaBella, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Matt Pennell, Antonis Rokas
Convergent expansions of keystone gene families drive metabolic innovation in a major eukaryotic clade. bioRxiv : the preprint server for biology (2024)
Julie Rojas, James Hose, H Auguste Dutcher, Michael Place, John F Wolters, Chris Todd Hittinger, Audrey P Gasch
Comparative modeling reveals the molecular determinants of aneuploidy fitness cost in a wild yeast model. bioRxiv : the preprint server for biology (2024)
Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob Lucas Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts. Science (New York, N.Y.) 384 (6694) (2024)
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marizeth Groenewald, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas, Chris Todd Hittinger
Functional and Evolutionary Integration of a Fungal Gene With a Bacterial Operon. Molecular biology and evolution 41 (4) (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Johnathan G Crandall, Xiao-Fan Zhou, Antonis Rokas, Chris Todd Hittinger
Specialization restricts the evolutionary paths available to yeast sugar transporters. bioRxiv : the preprint server for biology (2024)
Julie Rojas, James Hose, H Auguste Dutcher, Michael Place, John F Wolters, Chris Todd Hittinger, Audrey P Gasch
Comparative modeling reveals the molecular determinants of aneuploidy fitness cost in a wild yeast model. bioRxiv : the preprint server for biology (2024)
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marizeth Groenewald, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas, Chris Todd Hittinger
Functional and evolutionary integration of a fungal gene with a bacterial operon. Molecular biology and evolution (2024)
Bryan Zavala, Lauren Dineen, Kaitlin J Fisher, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xing-Xing Shen, Xiao-Fan Zhou, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas, Abigail Leavitt LaBella
Genomic factors shaping codon usage across the Saccharomycotina subphylum. G3 (Bethesda, Md.) (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marizeth Groenewald, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas, Chris Todd Hittinger
Functional and evolutionary integration of a fungal gene with a bacterial operon. Molecular biology and evolution (2024)
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marizeth Groenewald, Xiao-Fan Zhou, Xing-Xing Shen, Antonis Rokas, Chris Todd Hittinger
Functional and Evolutionary Integration of a Fungal Gene With a Bacterial Operon. Molecular biology and evolution 41 (4) (2024)
Bryan Zavala, Lauren Dineen, Kaitlin J Fisher, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xing-Xing Shen, Xiao-Fan Zhou, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas, Abigail Leavitt LaBella
Genomic factors shaping codon usage across the Saccharomycotina subphylum. G3 (Bethesda, Md.) (2024)
Bo Feng, Yonglin Li, Hongyue Liu, Jacob Lucas Steenwyk, Kyle T David, Xiaolin Tian, Biyang Xu, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Shengyuan Shao, Zhaohao Chen, Kaitlin J Fisher, Marizeth Groenewald, Chris Todd Hittinger, Xing-Xing Shen, Antonis Rokas, Xiao-Fan Zhou, Yuanning Li
Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage. bioRxiv : the preprint server for biology (2024)
Katharina O Barros, Megan Mader, David J Krause, Jasmyn Pangilinan, William Andreopoulos, Anna Lipzen, Stephen J Mondo, Igor V Grigoriev, Carlos A Rosa, Trey K Sato, Chris Todd Hittinger
Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces. Biotechnology for biofuels and bioproducts 17 (1) (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Johnathan G Crandall, Xiao-Fan Zhou, Antonis Rokas, Chris Todd Hittinger
Specialization restricts the evolutionary paths available to yeast sugar transporters. bioRxiv : the preprint server for biology (2024)
Christina M Chavez, Marizeth Groenewald, Amanda B Hulfachor, Gideon Kpurubu, Rene Huerta, Chris Todd Hittinger, Antonis Rokas
The cell morphological diversity of Saccharomycotina yeasts. FEMS yeast research 24 (2024)
Christina M Chavez, Marizeth Groenewald, Amanda B Hulfachor, Gideon Kpurubu, Rene Huerta, Chris Todd Hittinger, Antonis Rokas
The cell morphological diversity of Saccharomycotina yeasts. FEMS yeast research 24 (2024)
Kyle T David, Joshua G Schraiber, Johnathan G Crandall, Abigail Leavitt LaBella, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Matt Pennell, Antonis Rokas
Convergent expansions of keystone gene families drive metabolic innovation in a major eukaryotic clade. bioRxiv : the preprint server for biology (2024)
Julie Rojas, James Hose, H Auguste Dutcher, Michael Place, John F Wolters, Chris Todd Hittinger, Audrey P Gasch
Comparative modeling reveals the molecular determinants of aneuploidy fitness cost in a wild yeast model. bioRxiv : the preprint server for biology (2024)
Marie-Claire Harrison, Dana A Opulente, John F Wolters, Xing-Xing Shen, Xiaofan Zhou, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas, Abigail Leavitt LaBella
Exploring Saccharomycotina Yeast Ecology Through an Ecological Ontology Framework. Yeast (Chichester, England) (2024)
Marie-Claire Harrison, Emily J Ubbelohde, Abigail L LaBella, Dana A Opulente, John F Wolters, Xiaofan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Machine learning enables identification of an alternative yeast galactose utilization pathway. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Marie-Claire Harrison, Emily J Ubbelohde, Abigail L LaBella, Dana A Opulente, John F Wolters, Xiaofan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Machine learning enables identification of an alternative yeast galactose utilization pathway. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Katharina O Barros, Megan Mader, David J Krause, Jasmyn Pangilinan, William Andreopoulos, Anna Lipzen, Stephen J Mondo, Igor V Grigoriev, Carlos A Rosa, Trey K Sato, Chris Todd Hittinger
Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces. Biotechnology for biofuels and bioproducts 17 (1) (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Julie Rojas, James Hose, H Auguste Dutcher, Michael Place, John F Wolters, Chris Todd Hittinger, Audrey P Gasch
Comparative modeling reveals the molecular determinants of aneuploidy fitness cost in a wild yeast model. bioRxiv : the preprint server for biology (2024)
Bo Feng, Yonglin Li, Hongyue Liu, Jacob Lucas Steenwyk, Kyle T David, Xiaolin Tian, Biyang Xu, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Shengyuan Shao, Zhaohao Chen, Kaitlin J Fisher, Marizeth Groenewald, Chris Todd Hittinger, Xing-Xing Shen, Antonis Rokas, Xiao-Fan Zhou, Yuanning Li
Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage. bioRxiv : the preprint server for biology (2024)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Bryan Zavala, Lauren Dineen, Kaitlin J Fisher, Dana A Opulente, Marie-Claire Harrison, John F Wolters, Xing-Xing Shen, Xiao-Fan Zhou, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas, Abigail Leavitt LaBella
Genomic factors shaping codon usage across the Saccharomycotina subphylum. bioRxiv : the preprint server for biology (2024)
Dana A Opulente, Quinn K Langdon, Martin Jarzyna, Kelly V Buh, Max A B Haase, Marizeth Groenewald, Chris Todd Hittinger
Taxogenomic analysis of a novel yeast species isolated from soil, Pichia galeolata sp. nov. Yeast (Chichester, England) (2023)
David Peris, Emily J Ubbelohde, Meihua Christina Kuang, Jacek Kominek, Quinn K Langdon, Marie Adams, Justin A Koshalek, Amanda Beth Hulfachor, Dana A Opulente, David J Hall, Katie Hyma, Justin C Fay, Jean-Baptiste Leducq, Guillaume Charron, Christian R Landry, Diego Libkind, Carla Gonçalves, Paula Gonçalves, José Paulo Sampaio, Qi-Ming Wang, Feng-Yan Bai, Russell L Wrobel, Chris Todd Hittinger
Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces. Nature communications 14 (1) (2023)
David Peris, Emily J Ubbelohde, Meihua Christina Kuang, Jacek Kominek, Quinn K Langdon, Marie Adams, Justin A Koshalek, Amanda Beth Hulfachor, Dana A Opulente, David J Hall, Katie Hyma, Justin C Fay, Jean-Baptiste Leducq, Guillaume Charron, Christian R Landry, Diego Libkind, Carla Gonçalves, Paula Gonçalves, José Paulo Sampaio, Qi-Ming Wang, Feng-Yan Bai, Russell L Wrobel, Chris Todd Hittinger
Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces. Nature communications 14 (1) (2023)
Dana A Opulente, Abigail Leavitt LaBella, Marie-Claire Harrison, John F Wolters, Chao Liu, Yonglin Li, Jacek Kominek, Jacob L Steenwyk, Hayley R Stoneman, Jenna VanDenAvond, Caroline R Miller, Quinn K Langdon, Margarida Silva, Carla Gonçalves, Emily J Ubbelohde, Yuanning Li, Kelly V Buh, Martin Jarzyna, Max A B Haase, Carlos A Rosa, Neža Čadež, Diego Libkind, Jeremy H DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, José Paulo Sampaio, Paula Gonçalves, Xiaofan Zhou, Xing-Xing Shen, Marizeth Groenewald, Antonis Rokas, Chris Todd Hittinger
Genomic and ecological factors shaping specialism and generalism across an entire subphylum. bioRxiv : the preprint server for biology (2023)
Katharina O Barros, Flávia B M Alvarenga, Giulia Magni, Gisele F L Souza, Maxwel A Abegg, Fernanda Palladino, Sílvio S da Silva, Rita C L B Rodrigues, Trey K Sato, Chris Todd Hittinger, Carlos A Rosa
The Brazilian Amazonian rainforest harbors a high diversity of yeasts associated with rotting wood, including many candidates for new yeast species. Yeast (Chichester, England) 40 (2) (2023)
Johnathan G Crandall, Kaitlin J Fisher, Trey K Sato, Chris Todd Hittinger
Ploidy evolution in a wild yeast is linked to an interaction between cell type and metabolism. PLoS biology 21 (11) (2023)
Christina M Chavez, Marizeth Groenewald, Amanda B Hulfachor, Gideon Kpurubu, Rene Huerta, Chris Todd Hittinger, Antonis Rokas
The cell morphological diversity of Saccharomycotina yeasts. FEMS yeast research (2023)
David Peris, Emily J Ubbelohde, Meihua Christina Kuang, Jacek Kominek, Quinn K Langdon, Marie Adams, Justin A Koshalek, Amanda Beth Hulfachor, Dana A Opulente, David J Hall, Katie Hyma, Justin C Fay, Jean-Baptiste Leducq, Guillaume Charron, Christian R Landry, Diego Libkind, Carla Gonçalves, Paula Gonçalves, José Paulo Sampaio, Qi-Ming Wang, Feng-Yan Bai, Russell L Wrobel, Chris Todd Hittinger
Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces. Nature communications 14 (1) (2023)
Carla Gonçalves, Marie-Claire Harrison, Jacob Lucas Steenwyk, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Diverse signatures of convergent evolution in cacti-associated yeasts. bioRxiv : the preprint server for biology (2023)
David Peris, Emily J Ubbelohde, Meihua Christina Kuang, Jacek Kominek, Quinn K Langdon, Marie Adams, Justin A Koshalek, Amanda Beth Hulfachor, Dana A Opulente, David J Hall, Katie Hyma, Justin C Fay, Jean-Baptiste Leducq, Guillaume Charron, Christian R Landry, Diego Libkind, Carla Gonçalves, Paula Gonçalves, José Paulo Sampaio, Qi-Ming Wang, Feng-Yan Bai, Russell L Wrobel, Chris Todd Hittinger
Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces. Nature communications 14 (1) (2023)
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves, Dana A Opulente, Abigail Leavitt LaBella, Marizeth Groenewald, Xiaofan Zhou, Xing-Xing Shen, Antonis Rokas, Chris Todd Hittinger
Functional and evolutionary integration of a fungal gene with a bacterial operon. bioRxiv : the preprint server for biology (2023)
Rishitha L Nalabothu, Kaitlin J Fisher, Abigail Leavitt LaBella, Taylor A Meyer, Dana A Opulente, John F Wolters, Antonis Rokas, Chris Todd Hittinger
Codon optimization improves the prediction of xylose metabolism from gene content in budding yeasts. Molecular biology and evolution (2023)
Micaela Parra, Diego Libkind, Chris Todd Hittinger, Lucía Álvarez, Nicolas Bellora
Assembly and comparative genome analysis of a Patagonian Aureobasidium pullulans isolate reveals unexpected intraspecific variation. Yeast (Chichester, England) (2023)
Katharina O Barros, Flávia B M Alvarenga, Giulia Magni, Gisele F L Souza, Maxwel A Abegg, Fernanda Palladino, Sílvio S da Silva, Rita C L B Rodrigues, Trey K Sato, Chris Todd Hittinger, Carlos A Rosa
The Brazilian Amazonian rainforest harbors a high diversity of yeasts associated with rotting wood, including many candidates for new yeast species. Yeast (Chichester, England) 40 (2) (2023)
Katharina O Barros, Flávia B M Alvarenga, Giulia Magni, Gisele F L Souza, Maxwel A Abegg, Fernanda Palladino, Sílvio S da Silva, Rita C L B Rodrigues, Trey K Sato, Chris Todd Hittinger, Carlos A Rosa
The Brazilian Amazonian rainforest harbors a high diversity of yeasts associated with rotting wood, including many candidates for new yeast species. Yeast (Chichester, England) 40 (2) (2023)
David Peris, Emily J Ubbelohde, Meihua Christina Kuang, Jacek Kominek, Quinn K Langdon, Marie Adams, Justin A Koshalek, Amanda Beth Hulfachor, Dana A Opulente, David J Hall, Katie Hyma, Justin C Fay, Jean-Baptiste Leducq, Guillaume Charron, Christian R Landry, Diego Libkind, Carla Gonçalves, Paula Gonçalves, José Paulo Sampaio, Qi-Ming Wang, Feng-Yan Bai, Russell L Wrobel, Chris Todd Hittinger
Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces. Nature communications 14 (1) (2023)
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail Leavitt LaBella, John F Wolters, Xiao-Fan Zhou, Xing-Xing Shen, Marizeth Groenewald, Matthew W Pennell, Chris Todd Hittinger, Antonis Rokas
Saccharomycotina yeasts defy longstanding macroecological patterns. bioRxiv : the preprint server for biology (2023)
John F Wolters, Abigail L LaBella, Dana A Opulente, Antonis Rokas, Chris Todd Hittinger
Mitochondrial Genome Diversity across the Subphylum Saccharomycotina. bioRxiv : the preprint server for biology (2023)
Nicola T Case, Judith Berman, David S Blehert, Robert A Cramer, Christina A Cuomo, Cameron R Currie, Iuliana V Ene, Matthew C Fisher, Lillian K Fritz-Laylin, Aleeza Cara Gerstein, N Louise Glass, Neil A R Gow, Sarah Jane Gurr, Chris Todd Hittinger, Tobias M Hohl, Iliyan D Iliev, Timothy Y James, Hailing Jin, Bruce S Klein, James W Kronstad, Jeffrey M Lorch, Victoria McGovern, Aaron P Mitchell, Julie A Segre, Rebecca S Shapiro, Donald C Sheppard, Anita Sil, Jason E Stajich, Eva Holtgrewe Stukenbrock, John W Taylor, Dawn A Thompson, Gerard D Wright, Joseph Heitman, Leah E Cowen
The future of fungi: threats and opportunities. G3 (Bethesda, Md.) 12 (11) (2022)
Jacob Lucas Steenwyk, Megan A Phillips, Feng Yang, Swapneeta S Date, Todd R Graham, Judith Berman, Chris Todd Hittinger, Antonis Rokas
An orthologous gene coevolution network provides insight into eukaryotic cellular and genomic structure and function. Science advances 8 (18) (2022)
Elena Vanacloig-Pedros, Kaitlin J Fisher, Lisa Liu, Derek J Debrauske, Megan K M Young, Michael Place, Chris Todd Hittinger, Trey K Sato, Audrey P Gasch
Comparative chemical genomic profiling across plant-based hydrolysate toxins reveals widespread antagonism in fitness contributions. FEMS yeast research 21 (1) (2022)
Katharina O Barros, Flávia B M Alvarenga, Giulia Magni, Gisele F L Souza, Maxwel A Abegg, Fernanda Palladino, Sílvio S da Silva, Rita C L B Rodrigues, Trey K Sato, Chris Todd Hittinger, Carlos A Rosa
The Brazilian Amazonian rainforest harbors a high diversity of yeasts associated with rotting wood, including many candidates for new yeast species. Yeast (Chichester, England) (2022)
Katharina O Barros, Flávia B M Alvarenga, Giulia Magni, Gisele F L Souza, Maxwel A Abegg, Fernanda Palladino, Sílvio S da Silva, Rita C L B Rodrigues, Trey K Sato, Chris Todd Hittinger, Carlos A Rosa
The Brazilian Amazonian rainforest harbors a high diversity of yeasts associated with rotting wood, including many candidates for new yeast species. Yeast (Chichester, England) (2022)
David J Krause, Chris Todd Hittinger
Functional Divergence in a Multi-gene Family Is a Key Evolutionary Innovation for Anaerobic Growth in Saccharomyces cerevisiae. Molecular biology and evolution 39 (10) (2022)
Abigail Leavitt LaBella, Dana A Opulente, Jacob Lucas Steenwyk, Chris Todd Hittinger, Antonis Rokas
Signatures of optimal codon usage in metabolic genes inform budding yeast ecology. PLoS biology 19 (4) (2021)
Andrey M Yurkov, Artur Alves, Feng-Yan Bai, Kyria Boundy-Mills, Buzzini Pietro, Neža Čadež, Gianluigi Cardinali, Serge Casaregola, Vishnu Chaturvedi, Valérie Collin, Jack W Fell, Victoria Girard, Marizeth Groenewald, Ferry Hagen, Chris Todd Hittinger, Aleksey V Kachalkin, Markus Kostrzewa, Vassilis N Kouvelis, Diego Libkind, Xin-Zhan Liu, Thomas Maier, Wieland Meyer, Gábor Péter, Marcin Piątek, Vincent Robert, Carlos A Rosa, José Paulo Sampaio, Matthias Sipiczki, Marc Stadler, Takashi Sugita, Junta Sugiyama, Hiroshi Takagi, Masako Takashima, Benedetta Turchetti, Qi-Ming Wang, Teun Boekhout
Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes. IMA fungus 12 (1) (2021)
Caoimhe E O'Brien, João Oliveira-Pacheco, Eoin Ó Cinnéide, Max A B Haase, Chris Todd Hittinger, Thomas R Rogers, Óscar Zaragoza, Ursula Bond, Geraldine Butler
Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples. PLoS pathogens 17 (3) (2021)
William J Spurley, Kaitlin J Fisher, Quinn K Langdon, Kelly V Buh, Martin Jarzyna, Max A B Haase, Kayla Sylvester, Ryan V Moriarty, Daniel Rodriguez, Angela Sheddan, Sarah Wright, Lisa Sorlie, Amanda Beth Hulfachor, Dana A Opulente, Chris Todd Hittinger
Substrate, temperature, and geographical patterns among nearly 2000 natural yeast isolates. Yeast (Chichester, England) (2021)
Xing-Xing Shen, Yuanning Li, Chris Todd Hittinger, Xue-Xin Chen, Antonis Rokas
An investigation of irreproducibility in maximum likelihood phylogenetic inference. Nature communications 11 (1) (2020)
Quinn K Langdon, David Peris, Juan I Eizaguirre, Dana A Opulente, Kelly V Buh, Kayla Sylvester, Martin Jarzyna, María E Rodríguez, Christian Ariel Lopes, Diego Libkind, Chris Todd Hittinger
Postglacial migration shaped the genomic diversity and global distribution of the wild ancestor of lager-brewing hybrids. PLoS genetics 16 (4) (2020)
Xing-Xing Shen, Jacob Lucas Steenwyk, Abigail Leavitt LaBella, Dana A Opulente, Xiaofan Zhou, Jacek Kominek, Yuanning Li, Marizeth Groenewald, Chris Todd Hittinger, Antonis Rokas
Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota. Science advances 6 (45) (2020)
Prarthana S Dharampal, Luis Diaz-Garcia, Max A B Haase, Juan Zalapa, Cameron R Currie, Chris Todd Hittinger, Shawn A Steffan
Microbial Diversity Associated with the Pollen Stores of Captive-Bred Bumble Bee Colonies. Insects 11 (4) (2020)
Hayley R Stoneman, Russell L Wrobel, Michael Place, Michael Graham, David J Krause, Matteo De Chiara, Gianni Liti, Joseph Schacherer, Robert Landick, Audrey P Gasch, Trey K Sato, Chris Todd Hittinger
CRISpy-Pop: A Web Tool for Designing CRISPR/Cas9-Driven Genetic Modifications in Diverse Populations. G3 (Bethesda, Md.) 10 (11) (2020)
David Peris, William G Alexander, Kaitlin J Fisher, Ryan V Moriarty, Mira G Basuino, Emily J Ubbelohde, Russell L Wrobel, Chris Todd Hittinger
Synthetic hybrids of six yeast species. Nature communications 11 (1) (2020)
EmilyClare P Baker, Chris Todd Hittinger
Evolution of a novel chimeric maltotriose transporter in Saccharomyces eubayanus from parent proteins unable to perform this function. PLoS genetics 15 (4) (2019)
Abigail Leavitt LaBella, Dana A Opulente, Jacob Lucas Steenwyk, Chris Todd Hittinger, Antonis Rokas
Variation and selection on codon usage bias across an entire subphylum. PLoS genetics 15 (7) (2019)
Xueying C Li, David Peris, Chris Todd Hittinger, Elaine A Sia, Justin C Fay
Mitochondria-encoded genes contribute to evolution of heat and cold tolerance in yeast. Science advances 5 (1) (2019)
Neža Čadež, Nicolas Bellora, Ricardo Ulloa, Chris Todd Hittinger, Diego Libkind
Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina. PloS one 14 (1) (2019)
Quinn K Langdon, David Peris, EmilyClare P Baker, Dana A Opulente, Huu-Vang Nguyen, Ursula Bond, Paula Gonçalves, José Paulo Sampaio, Diego Libkind, Chris Todd Hittinger
Fermentation innovation through complex hybridization of wild and domesticated yeasts. Nature ecology & evolution 3 (11) (2019)
Jacob Lucas Steenwyk, Dana A Opulente, Jacek Kominek, Xing-Xing Shen, Xiao-Fan Zhou, Abigail Leavitt LaBella, Noah P Bradley, Brandt F Eichman, Neža Čadež, Diego Libkind, Jeremy DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, Chris Todd Hittinger, Antonis Rokas
Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts. PLoS biology 17 (5) (2019)
EmilyClare P Baker, David Peris, Ryan V Moriarty, Xueying C Li, Justin C Fay, Chris Todd Hittinger
Mitochondrial DNA and temperature tolerance in lager yeasts. Science advances 5 (1) (2019)
Tadeusz Krassowski, Aisling Y Coughlan, Xing-Xing Shen, Xiaofan Zhou, Jacek Kominek, Dana A Opulente, Robert Riley, Igor V Grigoriev, Nikunj Maheshwari, Denis C Shields, Cletus P Kurtzman, Chris Todd Hittinger, Antonis Rokas, Kenneth H Wolfe
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts. Nature communications 9 (1) (2018)
David J Krause, Jacek Kominek, Dana A Opulente, Xing-Xing Shen, Xiaofan Zhou, Quinn K Langdon, Jeremy DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, Antonis Rokas, Chris Todd Hittinger
Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts. Proceedings of the National Academy of Sciences of the United States of America 115 (43) (2018)
Carla Gonçalves, Jennifer H Wisecaver, Jacek Kominek, Madalena Salema Oom, Maria José Leandro, Xing-Xing Shen, Dana A Opulente, Xiaofan Zhou, David Peris, Cletus P Kurtzman, Chris Todd Hittinger, Antonis Rokas, Paula Gonçalves
Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage. eLife 7 (2018)
Douglas A Higgins, Megan K M Young, Mary Tremaine, Maria Sardi, Jenna M Fletcher, Margaret Agnew, Lisa Liu, Quinn Dickinson, David Peris, Russell L Wrobel, Chris Todd Hittinger, Audrey P Gasch, Steven W Singer, Blake A Simmons, Robert Landick, Michael P Thelen, Trey K Sato
Natural Variation in the Multidrug Efflux Pump SGE1 Underlies Ionic Liquid Tolerance in Yeast. Genetics 210 (1) (2018)
David Peris, Roberto Pérez-Torrado, Chris Todd Hittinger, Eladio Barrio, Amparo Querol
On the origins and industrial applications of Saccharomyces cerevisiae × Saccharomyces kudriavzevii hybrids. Yeast (Chichester, England) 35 (1) (2017)
David Peris, Ryan V Moriarty, William G Alexander, EmilyClare Baker, Kayla Sylvester, Maria Sardi, Quinn K Langdon, Diego Libkind, Qi-Ming Wang, Feng-Yan Bai, Jean-Baptiste Leducq, Guillaume Charron, Christian R Landry, José Paulo Sampaio, Paula Gonçalves, Katie E Hyma, Justin C Fay, Trey K Sato, Chris Todd Hittinger
Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production. Biotechnology for biofuels 10 (2017)
Xing-Xing Shen, Xiao-Fan Zhou, Jacek Kominek, Cletus P Kurtzman, Chris Todd Hittinger, Antonis Rokas
Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data. G3 (Bethesda, Md.) 6 (12) (2016)
Xiao-Fan Zhou, David Peris, Jacek Kominek, Cletus P Kurtzman, Chris Todd Hittinger, Antonis Rokas
In Silico Whole Genome Sequencer and Analyzer (iWGS): a Computational Pipeline to Guide the Design and Analysis of de novo Genome Sequencing Studies. G3 (Bethesda, Md.) 6 (11) (2016)
Meihua Christina Kuang, Paul D Hutchins, Jason D Russell, Joshua J Coon, Chris Todd Hittinger
Ongoing resolution of duplicate gene functions shapes the diversification of a metabolic network. eLife 5 (2016)