Yue Shi

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 13

Top Topics

Metastatic Renal Cell Carcinoma

Top Venues

Nature genetics

Molecular ecology resources

Molecular ecology

NPJ genomic medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Shuang G Zhao, Matthew Bootsma, Stanley Zhou, Raunak Shrestha, Thaidy Moreno-Rodriguez, Arian Lundberg, Chu Pan, Christopher Arlidge, James R Hawley, Adam Foye, Alana S Weinstein, Martin Sjostrom, Meng Zhang, Haolong Li, Lisa N Chesner, Nicholas R Rydzewski, Kyle T Helzer, Yue Shi, null null, Molly Lynch, Scott M Dehm, Joshua M Lang, Joshi J Alumkal, Housheng Hansen He, Alexander W Wyatt, Rahul R Aggarwal, Wilbert Zwart, Eric J Small, David A Quigley, Mathieu Lupien, Felix Y Feng
Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer. Nature genetics (2024)
Shuang G Zhao, Matthew Bootsma, Stanley Zhou, Raunak Shrestha, Thaidy Moreno-Rodriguez, Arian Lundberg, Chu Pan, Christopher Arlidge, James R Hawley, Adam Foye, Alana S Weinstein, Martin Sjostrom, Meng Zhang, Haolong Li, Lisa N Chesner, Nicholas R Rydzewski, Kyle T Helzer, Yue Shi, null null, Molly Lynch, Scott M Dehm, Joshua M Lang, Joshi J Alumkal, Housheng Hansen He, Alexander W Wyatt, Rahul R Aggarwal, Wilbert Zwart, Eric J Small, David A Quigley, Mathieu Lupien, Felix Y Feng
Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer. Nature genetics 56 (8) (2024)
Shuang G Zhao, Matthew Bootsma, Stanley Zhou, Raunak Shrestha, Thaidy Moreno-Rodriguez, Arian Lundberg, Chu Pan, Christopher Arlidge, James R Hawley, Adam Foye, Alana S Weinstein, Martin Sjostrom, Meng Zhang, Haolong Li, Lisa N Chesner, Nicholas R Rydzewski, Kyle T Helzer, Yue Shi, null null, Molly Lynch, Scott M Dehm, Joshua M Lang, Joshi J Alumkal, Housheng Hansen He, Alexander W Wyatt, Rahul R Aggarwal, Wilbert Zwart, Eric J Small, David A Quigley, Mathieu Lupien, Felix Y Feng
Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer. Nature genetics 56 (8) (2024)
Shuang G Zhao, Matthew Bootsma, Stanley Zhou, Raunak Shrestha, Thaidy Moreno-Rodriguez, Arian Lundberg, Chu Pan, Christopher Arlidge, James R Hawley, Adam Foye, Alana S Weinstein, Martin Sjostrom, Meng Zhang, Haolong Li, Lisa N Chesner, Nicholas R Rydzewski, Kyle T Helzer, Yue Shi, null null, Molly Lynch, Scott M Dehm, Joshua M Lang, Joshi J Alumkal, Housheng Hansen He, Alexander W Wyatt, Rahul R Aggarwal, Wilbert Zwart, Eric J Small, David A Quigley, Mathieu Lupien, Felix Y Feng
Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer. Nature genetics 56 (8) (2024)
Peter T Euclide, Wesley A Larson, Yue Shi, Kristen M Gruenthal, Kris A Christensen, Jim Seeb, Lisa W Seeb
Conserved islands of divergence associated with adaptive variation in sockeye salmon are maintained by multiple mechanisms. Molecular ecology (2023)
Cory Dick, Wesley A Larson, Kirby Karpan, Diana S Baetscher, Yue Shi, Suresh Andrew Sethi, Nann A Fangue, Mark J Henderson
Prey ration, temperature, and predator species influence digestion rates of prey DNA inferred from qPCR and metabarcoding. Molecular ecology resources (2023)
Yue Shi, Cory M Dick, Kirby Karpan, Diana Baetscher, Mark J Henderson, Suresh A Sethi, Megan V McPhee, Wesley A Larson
Toward absolute abundance for conservation applications: Estimating the number of contributors via microhaplotype genotyping of mixed-DNA samples. Molecular ecology resources (2023)
Hamza Bakhtiar, Kyle T Helzer, Yeonhee Park, Yi Chen, Nicholas R Rydzewski, Matthew L Bootsma, Yue Shi, Paul M Harari, Marina N Sharifi, Martin Sjöström, Joshua M Lang, Menggang Yu, Shuang G Zhao
Identification of phenocopies improves prediction of targeted therapy response over DNA mutations alone. NPJ genomic medicine 7 (1) (2022)
Matt J Thorstensen, Peter T Euclide, Jennifer D Jeffrey, Yue Shi, Jason R Treberg, Douglas A Watkinson, Eva C Enders, Wesley A Larson, Yasuhiro Kobayashi, Kenneth M Jeffries
A chromosomal inversion may facilitate adaptation despite periodic gene flow in a freshwater fish. Ecology and evolution 12 (5) (2022)
Yue Shi, Jared J Homola, Peter T Euclide, Daniel A Isermann, David C Caroffino, Megan V McPhee, Wesley A Larson
High-density genomic data reveal fine-scale population structure and pronounced islands of adaptive divergence in lake whitefish ( Coregonus clupeaformis ) from Lake Michigan. Evolutionary applications 15 (11) (2022)
Matthew L Bootsma, Rana R McKay, Hamid Emamekhoo, Rory M Bade, Jennifer L Schehr, Matthew C Mannino, Anupama Singh, Serena K Wolfe, Zachery D Schultz, Jamie M Sperger, Wanling Xie, Sabina Signoretti, Christos E Kyriakopoulos, David Kosoff, Edwin J Abel, Kyle T Helzer, Nicholas Rydzewski, Hamza Bakhtiar, Yue Shi, Grace Blitzer, Michael Bassetti, John M Floberg, Menggang Yu, Nan Sethakorn, Marina N Sharifi, Paul M Harari, Toni K Choueiri, Joshua M Lang, Shuang G Zhao
Longitudinal Molecular Profiling of Circulating Tumor Cells in Metastatic Renal Cell Carcinoma. Journal of clinical oncology : official journal of the American Society of Clinical Oncology 40 (31) (2022)
Yue Shi, Zi-Yan Miao, Jian-Ping Su, Samuel K Wasser
Shift of Maternal Gut Microbiota of Tibetan Antelope (Pantholops hodgsonii) During the Periparturition Period. Current microbiology 78 (2) (2021)
Yue Shi, Kristen L Bouska, Garrett J McKinney, William Dokai, Andrew Bartels, Megan V McPhee, Wesley A Larson
Gene flow influences the genomic architecture of local adaptation in six riverine fish species. Molecular ecology (2021)