Joshi J Alumkal

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 23

Top Topics

Squamous Cell Carcinoma

Radical Prostatectomy

Prostate Cancer

Top Venues

Cancer research

Nature genetics

Nature cell biology

Clinical cancer research : an official journal of the American Association for Cancer Research

This page only lists publications with an associated author ORCID identifier.

Publications

Meng Zhang, Martin Sjostrom, Xiekui Cui, Adam Foye, Kyle Farh, Raunak Shrestha, Arian Lundberg, Ha X Dang, Haolong Li, Phillip G Febbo, Rahul Aggarwal, Joshi J Alumkal, Eric J Small, null null, Christopher A Maher, Felix Y Feng, David A Quigley
Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progression. Nature cell biology 26 (7) (2024)
Shuang G Zhao, Matthew Bootsma, Stanley Zhou, Raunak Shrestha, Thaidy Moreno-Rodriguez, Arian Lundberg, Chu Pan, Christopher Arlidge, James R Hawley, Adam Foye, Alana S Weinstein, Martin Sjostrom, Meng Zhang, Haolong Li, Lisa N Chesner, Nicholas R Rydzewski, Kyle T Helzer, Yue Shi, null null, Molly Lynch, Scott M Dehm, Joshua M Lang, Joshi J Alumkal, Housheng Hansen He, Alexander W Wyatt, Rahul R Aggarwal, Wilbert Zwart, Eric J Small, David A Quigley, Mathieu Lupien, Felix Y Feng
Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer. Nature genetics (2024)
Meng Zhang, Martin Sjostrom, Xiekui Cui, Adam Foye, Kyle Farh, Raunak Shrestha, Arian Lundberg, Ha X Dang, Haolong Li, Phillip G Febbo, Rahul Aggarwal, Joshi J Alumkal, Eric J Small, null null, Christopher A Maher, Felix Y Feng, David A Quigley
Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progression. Nature cell biology (2024)
Meng Zhang, Martin Sjostrom, Xiekui Cui, Adam Foye, Kyle Farh, Raunak Shrestha, Arian Lundberg, Ha X Dang, Haolong Li, Phillip G Febbo, Rahul Aggarwal, Joshi J Alumkal, Eric J Small, null null, Christopher A Maher, Felix Y Feng, David A Quigley
Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progression. Nature cell biology 26 (7) (2024)
Meng Zhang, Martin Sjostrom, Xiekui Cui, Adam Foye, Kyle Farh, Raunak Shrestha, Arian Lundberg, Ha X Dang, Haolong Li, Phillip G Febbo, Rahul Aggarwal, Joshi J Alumkal, Eric J Small, null null, Christopher A Maher, Felix Y Feng, David A Quigley
Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progression. Nature cell biology 26 (7) (2024)
Shuang G Zhao, Matthew Bootsma, Stanley Zhou, Raunak Shrestha, Thaidy Moreno-Rodriguez, Arian Lundberg, Chu Pan, Christopher Arlidge, James R Hawley, Adam Foye, Alana S Weinstein, Martin Sjostrom, Meng Zhang, Haolong Li, Lisa N Chesner, Nicholas R Rydzewski, Kyle T Helzer, Yue Shi, null null, Molly Lynch, Scott M Dehm, Joshua M Lang, Joshi J Alumkal, Housheng Hansen He, Alexander W Wyatt, Rahul R Aggarwal, Wilbert Zwart, Eric J Small, David A Quigley, Mathieu Lupien, Felix Y Feng
Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer. Nature genetics 56 (8) (2024)
Raunak Shrestha, Lisa N Chesner, Meng Zhang, Stanley Zhou, Adam Foye, Arian Lundberg, Alana S Weinstein, Martin Sjostrom, Xiaolin Zhu, Thaidy Moreno-Rodriguez, Haolong Li, Su C/Pcf West Coast Prostate Cancer Dream Team, Joshi J Alumkal, Rahul R Aggarwal, Eric J Small, Mathieu Lupien, David A Quigley, Felix Y Feng
An Atlas of Accessible Chromatin in Advanced Prostate Cancer Reveals the Epigenetic Evolution during Tumor Progression. Cancer research (2024)
Shuang G Zhao, Matthew Bootsma, Stanley Zhou, Raunak Shrestha, Thaidy Moreno-Rodriguez, Arian Lundberg, Chu Pan, Christopher Arlidge, James R Hawley, Adam Foye, Alana S Weinstein, Martin Sjostrom, Meng Zhang, Haolong Li, Lisa N Chesner, Nicholas R Rydzewski, Kyle T Helzer, Yue Shi, null null, Molly Lynch, Scott M Dehm, Joshua M Lang, Joshi J Alumkal, Housheng Hansen He, Alexander W Wyatt, Rahul R Aggarwal, Wilbert Zwart, Eric J Small, David A Quigley, Mathieu Lupien, Felix Y Feng
Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer. Nature genetics 56 (8) (2024)
Shuang G Zhao, Matthew Bootsma, Stanley Zhou, Raunak Shrestha, Thaidy Moreno-Rodriguez, Arian Lundberg, Chu Pan, Christopher Arlidge, James R Hawley, Adam Foye, Alana S Weinstein, Martin Sjostrom, Meng Zhang, Haolong Li, Lisa N Chesner, Nicholas R Rydzewski, Kyle T Helzer, Yue Shi, null null, Molly Lynch, Scott M Dehm, Joshua M Lang, Joshi J Alumkal, Housheng Hansen He, Alexander W Wyatt, Rahul R Aggarwal, Wilbert Zwart, Eric J Small, David A Quigley, Mathieu Lupien, Felix Y Feng
Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer. Nature genetics 56 (8) (2024)
Arian Lundberg, Meng Zhang, Rahul R Aggarwal, Haolong Li, Li Zhang, Adam Foye, Martin Sjostrom, Jonathan Chou, Kevin Chang, Thaidy Moreno-Rodriguez, Raunak Shrestha, Avi Baskin, Xiaolin Zhu, Alana S Weinstein, Noah Younger, Joshi J Alumkal, Tomasz M Beer, Kim N Chi, Christopher P Evans, Martin E Gleave, Primo N Lara, Robert E Reiter, Matthew B Rettig, Owen N Witte, Alexander W Wyatt, Felix Y Feng, Eric J Small, David A Quigley
The genomic and epigenomic landscape of double-negative metastatic prostate cancer. Cancer research (2023)
Ailin Zhang, Nathan A Lau, Alicia Wong, Lisha G Brown, Ilsa M Coleman, Navonil DeSarkar, Dapei Li, Diana C DeLucia, Mark P Labrecque, Holly M Nguyen, Jennifer L Conner, Ruth F Dumpit, Lawrence D True, Daniel W Lin, Eva Corey, Joshi J Alumkal, Peter S Nelson, Colm Morrissey, John K Lee
Concurrent targeting of HDAC and PI3K to overcome phenotypic heterogeneity of castration-resistant and neuroendocrine prostate cancers. Cancer research communications (2023)
Xin Dong, Hui Xue, Fan Mo, Yen-Yi Lin, Dong Lin, Nelson K Y Wong, Yingqiang Sun, Scott Wilkinson, Anson T Ku, Jun Hao, Xinpei Ci, Rebecca Wu, Anne Haegert, Rebecca Silver, Mary-Ellen Taplin, Steven P Balk, Joshi J Alumkal, Adam G Sowalsky, Martin Gleave, Colin Collins, Yuzhuo Z Wang
Modeling Androgen Deprivation Therapy-Induced Prostate Cancer Dormancy and Its Clinical Implications. Molecular cancer research : MCR 20 (5) (2022)
Jeffrey W Tyner, Franziska Haderk, Anbarasu Kumaraswamy, Linda B Baughn, Brian Van Ness, Song Liu, Himangi Marathe, Joshi J Alumkal, Trever G Bivona, Keith Syson Chan, Brian J Druker, Alan D Hutson, Peter S Nelson, Charles L Sawyers, Christopher D Willey
Understanding Drug Sensitivity and Tackling Resistance in Cancer. Cancer research 82 (8) (2022)
Thomas C Westbrook, Xiangnan Guan, Eva Rodansky, Diana Flores, Chia Jen Liu, Aaron M Udager, Radhika A Patel, Michael C Haffner, Ya-Mei Hu, Duanchen Sun, Tomasz M Beer, Adam Foye, Rahul R Aggarwal, David A Quigley, Jack F Youngren, Charles J Ryan, Martin Gleave, Yuzhuo Z Wang, Jiaoti Huang, Ilsa Coleman, Colm Morrissey, Peter S Nelson, Christopher P Evans, Primo Lara, Robert E Reiter, Owen Witte, Matthew Rettig, Christopher K Wong, Alana S Weinstein, Vladislav Uzunangelov, Joshua M Stuart, George V Thomas, Felix Y Feng, Eric J Small, Joel Anthony Yates, Zheng Xia, Joshi J Alumkal
Transcriptional profiling of matched patient biopsies clarifies molecular determinants of enzalutamide-induced lineage plasticity. Nature communications 13 (1) (2022)
Martin Sjostrom, Shuang G Zhao, Samuel Levy, Meng Zhang, Yuhong Ning, Raunak Shrestha, Arian Lundberg, Cameron Herberts, Adam Foye, Rahul R Aggarwal, Junjie T Hua, Haolong Li, Anna Bergamaschi, Corinne Maurice-Dror, Ashutosh Maheshwari, Sujun Chen, Sarah W S Ng, Michael Fraser, Jessica Petricca, Michael Fraser, Lisa Chesner, Marc D Perry, Thaidy Moreno-Rodriguez, William S Chen, Joshi J Alumkal, Jonathan Chou, Alicia K Morgans, Tomasz M Beer, George V Thomas, Martin Gleave, Paul Lloyd, Tierney Phillips, Erin McCarthy, Michael C Haffner, Amina Zoubeidi, Matti Annala, Robert E Reiter, Matthew B Rettig, Owen N Witte, Lawrence Fong, Rohit Bose, Franklin W Huang, Joshua M Lang, Anders Bjartell, Nupam P Mahajan, Primo N Lara, Christopher P Evans, Phuoc T Tran, Edwin M Posadas, Chuan He, Xiao-Long Cui, Jiaoti Huang, Wilbert Zwart, Luke A Gilbert, Christopher A Maher, Paul C Boutros, Kim N Chi, Alan Ashworth, Eric J Small, Housheng Hansen He, Alexander W Wyatt, David A Quigley, Felix Y Feng
The 5-Hydroxymethylcytosine Landscape of Prostate Cancer. Cancer research 82 (21) (2022)
Dae-Hwan Kim, Duanchen Sun, William K Storck, Katherine Welker Leng, Chelsea Jenkins, Daniel J Coleman, David Sampson, Xiangnan Guan, Anbarasu Kumaraswamy, Eva S Rodansky, Joshua A Urrutia, Jacob A Schwartzman, Chao Zhang, Himisha Beltran, Mark P Labrecque, Colm Morrissey, Jared M Lucas, Ilsa M Coleman, Peter S Nelson, Eva Corey, Samuel K Handelman, Jonathan Z Sexton, Rahul Aggarwal, Wassim Abida, Felix Y Feng, Eric J Small, Daniel E Spratt, Armand Bankhead, Arvind Rao, Emily M Gesner, Sarah Attwell, Sanjay Lakhotia, Eric Campeau, Joel A Yates, Zheng Xia, Joshi J Alumkal
BET Bromodomain Inhibition Blocks an AR-Repressed, E2F1-Activated Treatment-Emergent Neuroendocrine Prostate Cancer Lineage Plasticity Program. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (17) (2021)
Zachery R Reichert, Tadas Kasputis, Srinivas Nallandhighal, Sophia M Abusamra, Amy Kasputis, Saloni Haruray, Yugang Wang, Shamara Williams, Udit Singhal, Ajjai Alva, Frank Cameron Cackowski, Megan E V Caram, Phillip L Palmbos, Sarah E Yentz, David C Smith, Joshi J Alumkal, Todd M Morgan
Multigene Profiling of Circulating Tumor Cells (CTCs) for Prognostic Assessment in Treatment-Naïve Metastatic Hormone-Sensitive Prostate Cancer (mHSPC). International journal of molecular sciences 23 (1) (2021)
Mark P Labrecque, Lisha G Brown, Ilsa M Coleman, Bryce Lakely, Nicholas J Brady, John K Lee, Holly M Nguyen, Dapei Li, Brian Hanratty, Michael C Haffner, David S Rickman, Lawrence D True, Daniel W Lin, Hung-Ming Lam, Joshi J Alumkal, Eva Corey, Peter S Nelson, Colm Morrissey
RNA Splicing Factors SRRM3 and SRRM4 Distinguish Molecular Phenotypes of Castration-Resistant Neuroendocrine Prostate Cancer. Cancer research 81 (18) (2021)
Frank C Cackowski, Chandan Kumar-Sinha, Rohit Mehra, Yi-Mi Wu, Dan R Robinson, Joshi J Alumkal, Arul M Chinnaiyan
Double-Negative Prostate Cancer Masquerading as a Squamous Cancer of Unknown Primary: A Clinicopathologic and Genomic Sequencing-Based Case Study. JCO precision oncology 4 (2020)
William S Chen, Winston A Haynes, Rebecca Waitz, Kathy Kamath, Agustin Vega-Crespo, Raunak Shrestha, Minlu Zhang, Adam Foye, Ignacio Baselga Carretero, Ivan Perez Garcilazo, Meng Zhang, Shuang G Zhao, Martin Sjostrom, David A Quigley, Jonathan Chou, Tomasz M Beer, Matthew B Rettig, Martin Gleave, Christopher P Evans, Primo Lara, Kim N Chi, Robert E Reiter, Joshi J Alumkal, Alan Ashworth, Rahul Aggarwal, Eric J Small, Patrick S Daugherty, Antoni Ribas, David Y Oh, John C Shon, Felix Y Feng
Autoantibody Landscape in Patients with Advanced Prostate Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 26 (23) (2020)
Rahul R Aggarwal, Michael T Schweizer, David M Nanus, Allan J Pantuck, Elisabeth I Heath, Eric Campeau, Sarah Attwell, Karen Norek, Margo Snyder, Lisa Bauman, Sanjay Lakhotia, Felix Y Feng, Eric J Small, Wassim Abida, Joshi J Alumkal
A Phase Ib/IIa Study of the Pan-BET Inhibitor ZEN-3694 in Combination with Enzalutamide in Patients with Metastatic Castration-resistant Prostate Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 26 (20) (2020)
Xiangnan Guan, Duanchen Sun, Eric Lu, Joshua A Urrutia, Robert Evan Reiter, Matthew B Rettig, Christopher P Evans, Primo Lara, Martin Gleave, Tomasz M Beer, George V Thomas, Jiaoti Huang, Rahul R Aggarwal, David A Quigley, Adam Foye, William S Chen, Jack Youngren, Alana S Weinstein, Felix Y Feng, Eric J Small, Zheng Xia, Joshi J Alumkal
Copy Number Loss of 17q22 Is Associated with Enzalutamide Resistance and Poor Prognosis in Metastatic Castration-Resistant Prostate Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 26 (17) (2020)
Daniel J Coleman, Lina Gao, Carly J King, Jacob A Schwartzman, Joshua A Urrutia, Archana Sehrawat, Junior Tayou, Ariel Balter, Julja Burchard, Kami E Chiotti, Daniel S Derrick, Duanchen Sun, Zheng Xia, Laura M Heiser, Joshi J Alumkal
BET bromodomain inhibition blocks the function of a critical AR-independent master regulator network in lethal prostate cancer. Oncogene 38 (28) (2019)