Zhangjun Fei

ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 113

Top Venues

Nature communications

Plant physiology

Horticulture research

The Plant journal : for cell and molecular biology

Boyce Thompson Institute for Plant Research

Texas A&M University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Boyce Thompson Institute for Plant Research

United States

Professor

Cornell University

United States

Adjunct Associate Professor :: Plant Pathology and Plant-Microbe Biology

Boyce Thompson Institute for Plant Research

United States

Associate Professor

Boyce Thompson Institute for Plant Research

United States

Assistant Professor

Virginia Polytechnic Institute and State University

United States

Research Scientist :: Virginia Bioinformatics Institute

Education History

Texas A&M University

United States

PHD :: Horticulture

China Agricultural University

China

MSC :: Horticulture

China Agricultural University

China

BSC :: Horticulture

Publications

Xuebo Zhao, Jingyin Yu, Bidisha Chanda, Jiantao Zhao, Shan Wu, Yi Zheng, Honghe Sun, Amnon Levi, Kai-Shu Ling, Zhangjun Fei
Genomic and pangenomic analyses provide insights into the population history and genomic diversification of bottle gourd. The New phytologist 242 (5) (2024)
Wenyong Shao, Jingrui Wang, Yueqi Zhang, Chaofan Zhang, Jie Chen, Yun Chen, Zhangjun Fei, Zhonghua Ma, Xuepeng Sun, Chen Jiao
The jet-like chromatin structure defines active secondary metabolism in fungi. Nucleic acids research (2024)
Wenyong Shao, Jingrui Wang, Yueqi Zhang, Chaofan Zhang, Jie Chen, Yun Chen, Zhangjun Fei, Zhonghua Ma, Xuepeng Sun, Chen Jiao
The jet-like chromatin structure defines active secondary metabolism in fungi. Nucleic acids research 52 (9) (2024)
Stephanie Rett-Cadman, Yiqun Weng, Zhangjun Fei, Addie M Thompson, Rebecca Grumet
Genome-Wide Association Study of Cuticle and Lipid Droplet Properties of Cucumber ( Cucumis sativus L.) Fruit. International journal of molecular sciences 25 (17) (2024)
Anze Svara, Honghe Sun, Zhangjun Fei, Awais Khan
Advancing apple genetics research: Malus coronaria and Malus ioensis genomes and a gene family-based pangenome of native North American apples. DNA research : an international journal for rapid publication of reports on genes and genomes (2024)
Xiaocheng Yu, Jinge Liu, Qiulin Qin, Ikram Zribi, Jingyin Yu, Shengming Yang, Randy D Dinkins, Zhangjun Fei, Attila Kereszt, Hongyan Zhu
Species-specific microsymbiont discrimination mediated by a Medicago receptor kinase. Science advances 10 (31) (2024)
Changjuan Mo, Haiyan Wang, Minghua Wei, Qingguo Zeng, Xuejun Zhang, Zhangjun Fei, Yongbing Zhang, Qiusheng Kong
Complete genome assembly provides a high-quality skeleton for pan-NLRome construction in melon. The Plant journal : for cell and molecular biology 118 (6) (2024)
Wenyong Shao, Jingrui Wang, Yueqi Zhang, Chaofan Zhang, Jie Chen, Yun Chen, Zhangjun Fei, Zhonghua Ma, Xuepeng Sun, Chen Jiao
The jet-like chromatin structure defines active secondary metabolism in fungi. Nucleic acids research 52 (9) (2024)
Michael A Fallon, Hisham Tadfie, Aracely P Watson, Madeline M Dyke, Christopher Flores, Nathan Cook, Zhangjun Fei, Cynthia K Holland
Molecular basis of one-step methyl anthranilate biosynthesis in grapes, sweet orange, and maize. The Plant journal : for cell and molecular biology (2024)
Changjuan Mo, Haiyan Wang, Minghua Wei, Qingguo Zeng, Xuejun Zhang, Zhangjun Fei, Yongbing Zhang, Qiusheng Kong
Complete genome assembly provides a high-quality skeleton for pan-NLRome construction in melon. The Plant journal : for cell and molecular biology (2024)
Michael A Fallon, Hisham Tadfie, Aracely P Watson, Madeline M Dyke, Christopher Flores, Nathan Cook, Zhangjun Fei, Cynthia K Holland
Molecular basis of one-step methyl anthranilate biosynthesis in grapes, sweet orange, and maize. The Plant journal : for cell and molecular biology 119 (5) (2024)
Leila Feiz, Christine Shyu, Shan Wu, Kevin R Ahern, Iram Gull, Ying Rong, Caroline J Artymowicz, Miguel A Piñeros, Zhangjun Fei, Thomas P Brutnell, Georg Jander
COI1 F-box proteins regulate DELLA protein levels, growth, and photosynthetic efficiency in maize. The Plant cell (2024)
Ying Zhang, Yiming Wang, Ruitao Liu, Zhangjun Fei, Xiucai Fan, Jianfu Jiang, Lei Sun, Xun Meng, Chonghuai Liu
Antibody array-based proteome approach reveals proteins involved in grape seed development. Plant physiology 195 (1) (2024)
Wenyong Shao, Jingrui Wang, Yueqi Zhang, Chaofan Zhang, Jie Chen, Yun Chen, Zhangjun Fei, Zhonghua Ma, Xuepeng Sun, Chen Jiao
The jet-like chromatin structure defines active secondary metabolism in fungi. Nucleic acids research 52 (9) (2024)
Xiaocheng Yu, Jinge Liu, Qiulin Qin, Ikram Zribi, Jingyin Yu, Shengming Yang, Randy D Dinkins, Zhangjun Fei, Attila Kereszt, Hongyan Zhu
Species-specific microsymbiont discrimination mediated by a Medicago receptor kinase. Science advances 10 (31) (2024)
Ying Zhang, Yiming Wang, Ruitao Liu, Zhangjun Fei, Xiucai Fan, Jianfu Jiang, Lei Sun, Xun Meng, Chonghuai Liu
Antibody array-based proteome approach reveals proteins involved in grape seed development. Plant physiology (2024)
Xuebo Zhao, Jingyin Yu, Bidisha Chanda, Jiantao Zhao, Shan Wu, Yi Zheng, Honghe Sun, Amnon Levi, Kai-Shu Ling, Zhangjun Fei
Genomic and pangenomic analyses provide insights into the population history and genomic diversification of bottle gourd. The New phytologist (2024)
Wenyong Shao, Jingrui Wang, Yueqi Zhang, Chaofan Zhang, Jie Chen, Yun Chen, Zhangjun Fei, Zhonghua Ma, Xuepeng Sun, Chen Jiao
The jet-like chromatin structure defines active secondary metabolism in fungi. Nucleic acids research 52 (9) (2024)
Fan Xia, Ning Zhang, Renee E Smith, Joydeep Chakraborty, Guy Sobol, Xuemei Tang, Zhangjun Fei, Guido Sessa, Gregory B Martin
Related type 2C protein phosphatases Pic3 and Pic12 negatively regulate immunity in tomato to Pseudomonas syringae. Plant physiology (2024)
Ying Zhang, Yiming Wang, Ruitao Liu, Zhangjun Fei, Xiucai Fan, Jianfu Jiang, Lei Sun, Xun Meng, Chonghuai Liu
Antibody array-based proteome approach reveals proteins involved in grape seed development. Plant physiology 195 (1) (2024)
Philippe Nicolas, Richard J Pattison, Yi Zheng, Taly Lapidot-Cohen, Yariv Brotman, Sonia Osorio, Alisdair Robert Fernie, Zhangjun Fei, Carmen Catalá
Starch deficiency in tomato causes transcriptional reprogramming that modulates fruit development, metabolism and stress responses. Journal of experimental botany (2023)
Honglin Feng, Wenbo Chen, Sonia Hussain, Sara Shakir, Vered Tzin, Femi Adegbayi, Todd Ugine, Zhangjun Fei, Georg Jander
Horizontally transferred genes as RNA interference targets for aphid and whitefly control. Plant biotechnology journal 21 (4) (2023)
Ning Li, Qiang He, Juan Wang, Baike Wang, Jiantao Zhao, Shaoyong Huang, Tao Yang, Yaping Tang, Shengbao Yang, Patiguli Aisimutuola, Ruiqiang Xu, Jiahui Hu, Chunping Jia, Kai Ma, Zhiqiang Li, Fangling Jiang, Jie Gao, Haiyan Lan, Yongfeng Zhou, Xinyan Zhang, Sanwen Huang, Zhangjun Fei, Huan Wang, Hongbo Li, Qinghui Yu
Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species. Nature genetics (2023)
Dong Meng, Hongyan Cao, Qing Yang, Mengxia Zhang, Ewa Borejsza-Wysocka, Hui-Cong Wang, Abhaya M Dandekar, Zhangjun Fei, Lailiang Cheng
SnRK1 kinase-mediated phosphorylation of transcription factor bZIP39 regulates sorbitol metabolism in apple. Plant physiology (2023)
Feng Liu, Jiantao Zhao, Honghe Sun, Cheng Xiong, Xuepeng Sun, Xin Wang, Zhongyi Wang, Robert L Jarret, Jin Wang, Bingqian Tang, Hao Xu, Bowen Hu, Huan Suo, Bozhi Yang, Lijun Ou, Xuefeng Li, Shudong Zhou, Sha Yang, Zhoubing Liu, Fang Yuan, Zhenming Pei, Yanqing Ma, Xiongze Dai, Shan Wu, Zhangjun Fei, Xuexiao Zou
Genomes of cultivated and wild Capsicum species provide insights into pepper domestication and population differentiation. Nature communications 14 (1) (2023)
Anze Svara, Honghe Sun, Zhangjun Fei, Awais Khan
Chromosome-level phased genome assembly of 'Antonovka' identified candidate apple scab resistance genes highly homologous to HcrVf2 and HcrVf1 on linkage group 1. G3 (Bethesda, Md.) (2023)
Xiaofen Yu, Mengyun Qin, Minghao Qu, Quan Jiang, Sumin Guo, Zhenghai Chen, Yufang Shen, Guodong Fu, Zhangjun Fei, Hongwen Huang, Lei Gao, Xiaohong Yao
Genomic analyses reveal dead-end hybridization between two deeply divergent kiwifruit species rather than homoploid hybrid speciation. The Plant journal : for cell and molecular biology (2023)
Ju-Chen Chia, Jiapei Yan, Maryam Rahmati Ishka, Marta Marie Faulkner, Eli Simons, Rong Huang, Louisa M Smieska, Arthur Woll, Ryan V Tappero, Andrew M Kiss, Chen Jiao, Zhangjun Fei, Leon V Kochian, Elsbeth L Walker, Miguel A Piñeros, Olena K Vatamaniuk
Loss of OPT3 function decreases phloem copper levels and impairs crosstalk between copper and iron homeostasis and shoot-to-root signaling in Arabidopsis thaliana. The Plant cell (2023)
He Qiang Lou, Lili Song, Xiaolong Li, Hailing Zi, Weijie Chen, Yadi Gao, Shan Zheng, Zhangjun Fei, Xuepeng Sun, Jiasheng Wu
The Torreya grandis genome illuminates the origin and evolution of gymnosperm-specific sciadonic acid biosynthesis. Nature communications 14 (1) (2023)
He Qiang Lou, Lili Song, Xiaolong Li, Hailing Zi, Weijie Chen, Yadi Gao, Shan Zheng, Zhangjun Fei, Xuepeng Sun, Jiasheng Wu
The Torreya grandis genome illuminates the origin and evolution of gymnosperm-specific sciadonic acid biosynthesis. Nature communications 14 (1) (2023)
Mercy Kitavi, Dorcus C Gemenet, Joshua C Wood, John P Hamilton, Shan Wu, Zhangjun Fei, Awais Khan, Carol Robin Buell
Identification of genes associated with abiotic stress tolerance in sweetpotato using weighted gene co-expression network analysis. Plant direct 7 (10) (2023)
Mei Liu, Baoshan Kang, Huijie Wu, Miguel A Aranda, Bin Peng, Liming Liu, Zhangjun Fei, Ni Hong, Qin-Sheng Gu
Transcriptomic and metabolic profiling of watermelon uncovers the role of salicylic acid and flavonoids in the resistance to cucumber green mottle mosaic virus. Journal of experimental botany (2023)
Shan Wu, Honghe Sun, Lei Gao, Sandra Branham, Cecilia McGregor, Susanne S Renner, Yong Xu, Chandrasekar Kousik, W Patrick Wechter, Amnon Levi, Zhangjun Fei
A Citrullus genus super-pangenome reveals extensive variations in wild and cultivated watermelons and sheds light on watermelon evolution and domestication. Plant biotechnology journal (2023)
He Qiang Lou, Lili Song, Xiaolong Li, Hailing Zi, Weijie Chen, Yadi Gao, Shan Zheng, Zhangjun Fei, Xuepeng Sun, Jiasheng Wu
The Torreya grandis genome illuminates the origin and evolution of gymnosperm-specific sciadonic acid biosynthesis. Nature communications 14 (1) (2023)
Honglin Feng, Wenbo Chen, Sonia Hussain, Sara Shakir, Vered Tzin, Femi Adegbayi, Todd Ugine, Zhangjun Fei, Georg Jander
Horizontally transferred genes as RNA interference targets for aphid and whitefly control. Plant biotechnology journal 21 (4) (2023)
Honglin Feng, Wenbo Chen, Sonia Hussain, Sara Shakir, Vered Tzin, Femi Adegbayi, Todd Ugine, Zhangjun Fei, Georg Jander
Horizontally transferred genes as RNA interference targets for aphid and whitefly control. Plant biotechnology journal (2022)
Philippe Nicolas, Yoshihito Shinozaki, Adrian F Powell, Glenn Philippe, Stephen I Snyder, Kan Bao, Yi Zheng, Yimin Xu, Lance Courtney, Julia Vrebalov, Clare L Casteel, Lukas A Mueller, Zhangjun Fei, James J Giovannoni, Jocelyn K C Rose, Carmen Catalá
Spatiotemporal dynamics of the tomato fruit transcriptome under prolonged water stress. Plant physiology 190 (4) (2022)
Hongbo Li, Shenhao Wang, Sen Chai, Zhiquan Yang, Qiqi Zhang, Hongjia Xin, Yuanchao Xu, Shengnan Lin, Xinxiu Chen, Zhiwang Yao, Qing-Yong Yang, Zhangjun Fei, Sanwen Huang, Zhong-Hua Zhang
Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber. Nature communications 13 (1) (2022)
Jie Ye, Xin Wang, Wenqian Wang, Huiyang Yu, Guo Ai, Changxing Li, Pengya Sun, Xianyu Wang, Hanxia Li, Bo Ouyang, Junhong Zhang, Yuyang Zhang, Heyou Han, James J Giovannoni, Zhangjun Fei, Zhibiao Ye
Genome-wide association study reveals the genetic architecture of 27 agronomic traits in tomato. Plant physiology 186 (4) (2022)
Ning Zhang, Chloe A Hecht, Xuepeng Sun, Zhangjun Fei, Gregory B Martin
Loss of function of the bHLH transcription factor Nrd1 in tomato enhances resistance to Pseudomonas syringae. Plant physiology 190 (2) (2022)
Seunghyun Ban, Islam El-Sharkawy, Jiantao Zhao, Zhangjun Fei, Kenong Xu
An apple somatic mutation of delayed fruit maturation date is primarily caused by a retrotransposon insertion-associated large deletion. The Plant journal : for cell and molecular biology 111 (6) (2022)
Ming Chen, Lin Guo, Muthusamy Ramakrishnan, Zhangjun Fei, Kunnummal Kurungara Vinod, Yulong Ding, Chen Jiao, Zhipeng Gao, Ruofei Zha, Chunyue Wang, Zhimin Gao, Fen Yu, Guodong Ren, Qiang Wei
Rapid growth of Moso bamboo (Phyllostachys edulis): Cellular roadmaps, transcriptome dynamics, and environmental factors. The Plant cell 34 (10) (2022)
Xiaoyu Tu, Sibo Ren, Wei Shen, Jianjian Li, Yuxiang Li, Chuanshun Li, Yangmeihui Li, Zhanxiang Zong, Weibo Xie, Donald Grierson, Zhangjun Fei, James J Giovannoni, Pinghua Li, Silin Zhong
Limited conservation in cross-species comparison of GLK transcription factor binding suggested wide-spread cistrome divergence. Nature communications 13 (1) (2022)
Xiaoyu Tu, Sibo Ren, Wei Shen, Jianjian Li, Yuxiang Li, Chuanshun Li, Yangmeihui Li, Zhanxiang Zong, Weibo Xie, Donald Grierson, Zhangjun Fei, James J Giovannoni, Pinghua Li, Silin Zhong
Limited conservation in cross-species comparison of GLK transcription factor binding suggested wide-spread cistrome divergence. Nature communications 13 (1) (2022)
You Qing, Yi Zheng, Sizolwenkosi Mlotshwa, Heather N Smith, Xin Wang, Xuyang Zhai, Esther van der Knaap, Ying Wang, Zhangjun Fei
Dynamically expressed small RNAs, substantially driven by genomic structural variants, contribute to transcriptomic changes during tomato domestication. The Plant journal : for cell and molecular biology 110 (6) (2022)
Honglin Feng, Wenbo Chen, Sonia Hussain, Sara Shakir, Vered Tzin, Femi Adegbayi, Todd Ugine, Zhangjun Fei, Georg Jander
Horizontally transferred genes as RNA interference targets for aphid and whitefly control. Plant biotechnology journal (2022)
Jingyin Yu, Shan Wu, Honghe Sun, Xin Wang, Xuemei Tang, Shaogui Guo, Zhonghua Zhang, Sanwen Huang, Yong Xu, Yiqun Weng, Michael Mazourek, Cecilia McGregor, Susanne S Renner, Sandra Branham, Chandrasekar Kousik, W Patrick Wechter, Amnon Levi, Rebecca Grumet, Yi Zheng, Zhangjun Fei
CuGenDBv2: an updated database for cucurbit genomics. Nucleic acids research (2022)
Oscar A Pérez-Escobar, Sergio Tusso, Natalia A S Przelomska, Shan Wu, Philippa Ryan, Mark Nesbitt, Martina V Silber, Michaela Preick, Zhangjun Fei, Michael Hofreiter, Guillaume Chomicki, Susanne S Renner
Genome Sequencing of up to 6,000-Year-Old Citrullus Seeds Reveals Use of a Bitter-Fleshed Species Prior to Watermelon Domestication. Molecular biology and evolution 39 (8) (2022)
Xiaoyu Tu, Sibo Ren, Wei Shen, Jianjian Li, Yuxiang Li, Chuanshun Li, Yangmeihui Li, Zhanxiang Zong, Weibo Xie, Donald Grierson, Zhangjun Fei, James J Giovannoni, Pinghua Li, Silin Zhong
Limited conservation in cross-species comparison of GLK transcription factor binding suggested wide-spread cistrome divergence. Nature communications 13 (1) (2022)
Adrian F Powell, Ari Feder, Jie Li, Maximilian H-W Schmidt, Lance Courtney, Saleh Alseekh, Emma M Jobson, Alexander Vogel, Yimin Xu, David Lyon, Kathryn Dumschott, Marcus McHale, Ronan Sulpice, Kan Bao, Rohit Lal, Asha Duhan, Asis Hallab, Alisandra K Denton, Marie E Bolger, Alisdair Robert Fernie, Sarah R Hind, Lukas A Mueller, Gregory B Martin, Zhangjun Fei, Cathie Martin, James J Giovannoni, Susan R Strickler, Björn Usadel
A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity. The Plant journal : for cell and molecular biology 110 (6) (2022)
Xiaofeng Cai, Xuepeng Sun, Chenxi Xu, Honghe Sun, Xiaoli Wang, Chenhui Ge, Zhonghua Zhang, Quanxi Wang, Zhangjun Fei, Chen Jiao, Quanhua Wang
Author Correction: Genomic analyses provide insights into spinach domestication and the genetic basis of agronomic traits. Nature communications 13 (1) (2022)
Xiaoyu Tu, Sibo Ren, Wei Shen, Jianjian Li, Yuxiang Li, Chuanshun Li, Yangmeihui Li, Zhanxiang Zong, Weibo Xie, Donald Grierson, Zhangjun Fei, James J Giovannoni, Pinghua Li, Silin Zhong
Limited conservation in cross-species comparison of GLK transcription factor binding suggested wide-spread cistrome divergence. Nature communications 13 (1) (2022)
Yao Zhou, Zhiyang Zhang, Zhigui Bao, Hongbo Li, Yaqing Lyu, Yanjun Zan, Yaoyao Wu, Lin Cheng, Yuhan Fang, Kun Wu, Jinzhe Zhang, Hongjun Lyu, Tao Lin, Qiang Gao, Surya Saha, Lukas Mueller, Zhangjun Fei, Thomas Städler, Shizhong Xu, Zhi-Wu Zhang, Doug Speed, Sanwen Huang
Graph pangenome captures missing heritability and empowers tomato breeding. Nature 606 (7914) (2022)
Xiaofeng Cai, Xuepeng Sun, Chenxi Xu, Honghe Sun, Xiaoli Wang, Chenhui Ge, Zhonghua Zhang, Quanxi Wang, Zhangjun Fei, Chen Jiao, Quanhua Wang
Genomic analyses provide insights into spinach domestication and the genetic basis of agronomic traits. Nature communications 12 (1) (2021)
Ning Guo, Shenyun Wang, Lei Gao, Yongming Liu, Xin Wang, Enhui Lai, Mengmeng Duan, Guixiang Wang, Jingjing Li, Meng Yang, Mei Zong, Shuo Han, Yanzheng Pei, Theo Borm, Honghe Sun, Liming Miao, Di Liu, Fangwei Yu, Wei Zhang, Heliang Ji, Chaohui Zhu, Yong Xu, Guusje Bonnema, Jianbin Li, Zhangjun Fei, Fan Liu
Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification. BMC biology 19 (1) (2021)
Chenxia Cheng, Qin Yu, Yaru Wang, Hong Wang, Yuhan Dong, Yuqi Ji, Xiao Feng Zhou, Yonghong Li, Cai-Zhong Jiang, Su-Sheng Gan, Liangjun Zhao, Zhangjun Fei, Junping Gao, Nan Ma
Ethylene-regulated asymmetric growth of the petal base promotes flower opening in rose (Rosa hybrida). The Plant cell 33 (4) (2021)
Ming-Yue Zhang, Cheng Xue, Hongju Hu, Jiaming Li, Yongsong Xue, Runze Wang, Jing Fan, Cheng Zou, Shutian Tao, Mengfan Qin, Bing Bai, Xiaolong Li, Chao Gu, Shan Wu, Xu Chen, Guangyan Yang, Yueyuan Liu, Manyi Sun, Zhangjun Fei, Shaoling Zhang, Jun Wu
Genome-wide association studies provide insights into the genetic determination of fruit traits of pear. Nature communications 12 (1) (2021)
Xin Wang, Kaori Ando, Shan Wu, Umesh K Reddy, Prabin Tamang, Kan Bao, Sue A Hammar, Rebecca Grumet, James D McCreight, Zhangjun Fei
Genetic characterization of melon accessions in the U.S. National Plant Germplasm System and construction of a melon core collection. Molecular horticulture 1 (1) (2021)
Yanna Shi, Julia Vrebalov, Hui Zheng, Yimin Xu, Xue-Ren Yin, Wenli Liu, Zimeng Liu, Iben Sørensen, Guanqing Su, Qiyue Ma, Daniel Evanich, Jocelyn K C Rose, Zhangjun Fei, Joyce Van Eck, Theodore Thannhauser, Kun-Song Chen, James J Giovannoni
A tomato LATERAL ORGAN BOUNDARIES transcription factor, SlLOB1, predominantly regulates cell wall and softening components of ripening. Proceedings of the National Academy of Sciences of the United States of America 118 (33) (2021)
Changtian Pan, Dandan Yang, Xiaolin Zhao, Yue Liu, Mengzhuo Li, Lei Ye, Zhen-Hui Gong, Fangjie Yu, Anthony Tumbeh Lamin-Samu, Zhangjun Fei, Gang Lu
PIF4 negatively modulates cold tolerance in tomato anthers via temperature-dependent regulation of tapetal cell death. The Plant cell 33 (7) (2021)
Rebecca Grumet, James D McCreight, Cecilia McGregor, Yiqun Weng, Michael Mazourek, Kathleen Reitsma, Joanne Labate, Angela Davis, Zhangjun Fei
Genetic Resources and Vulnerabilities of Major Cucurbit Crops. Genes 12 (8) (2021)
Noam Chayut, Hui Yuan, Yuval Saar, Yi Zheng, Tianhu Sun, Xuesong Zhou, Anna Hermanns, Elad Oren, Adi Faigenboim, Maixia Hui, Zhangjun Fei, Michael Mazourek, Joseph Burger, Yaakov Tadmor, Li Li
Comparative transcriptome analyses shed light on carotenoid production and plastid development in melon fruit. Horticulture research 8 (1) (2021)
Susanne S Renner, Shan Wu, Oscar A Pérez-Escobar, Martina V Silber, Zhangjun Fei, Guillaume Chomicki
A chromosome-level genome of a Kordofan melon illuminates the origin of domesticated watermelons. Proceedings of the National Academy of Sciences of the United States of America 118 (23) (2021)
Lili Ma, Qing Wang, Jianlou Mu, Anzhen Fu, Changlong Wen, Xiaoyan Zhao, Lipu Gao, Jian Li, Junying Shi, Yunxiang Wang, Xuewen Zhang, Xuechuan Zhang, Zhangjun Fei, Donald Grierson, Jinhua Zuo
The genome and transcriptome analysis of snake gourd provide insights into its evolution and fruit development and ripening. Horticulture research 7 (1) (2020)
Yingzhen Yang, José Cuenca, Nian Wang, Zhenchang Liang, Honghe Sun, Benjamin Gutierrez, Xiaojun Xi, Jie Arro, Yi Wang, Peige Fan, Jason Londo, Peter Cousins, Shaohua Li, Zhangjun Fei, Gan-Yuan Zhong
A key 'foxy' aroma gene is regulated by homology-induced promoter indels in the iconic juice grape 'Concord'. Horticulture research 7 (1) (2020)
Shenghui Jiang, Nan Wang, Min Chen, Rui Zhang, Qingguo Sun, Haifeng Xu, Zongying Zhang, Yicheng Wang, Xiuqi Sui, Sufang Wang, Hongcheng Fang, Weifang Zuo, Mengyu Su, Jing Zhang, Zhangjun Fei, Xuesen Chen
Methylation of MdMYB1 locus mediated by RdDM pathway regulates anthocyanin biosynthesis in apple. Plant biotechnology journal 18 (8) (2020)
Junyang Yue, Jiacheng Liu, Wei Tang, Ya Qing Wu, Xiaofeng Tang, Wei Li, Ying Yang, Lihuan Wang, Shengxiong Huang, Congbing Fang, Kun Zhao, Zhangjun Fei, Yongsheng Liu, Yi Zheng
Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics. Horticulture research 7 (2020)
Xin Wang, Lei Gao, Chen Jiao, Stefanos Stravoravdis, Prashant S Hosmani, Surya Saha, Jing Zhang, Samantha Mainiero, Susan R Strickler, Carmen Catala, Gregory B Martin, Lukas A Mueller, Julia Vrebalov, James J Giovannoni, Shan Wu, Zhangjun Fei
Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding. Nature communications 11 (1) (2020)
Ryan P McQuinn, Nigel E Gapper, Amanda G Gray, Silin Zhong, Takayuki Tohge, Zhangjun Fei, Alisdair R Fernie, James J Giovannoni
Manipulation of ZDS in tomato exposes carotenoid- and ABA-specific effects on fruit development and ripening. Plant biotechnology journal 18 (11) (2020)
Yi Ren, Honghe Sun, Mei Zong, Shaogui Guo, Zhijie Ren, Jianyu Zhao, Maoying Li, Jie Zhang, Shouwei Tian, Jinfang Wang, Yongtao Yu, Guoyi Gong, Haiying Zhang, Hongju He, Legong Li, Xiaolan Zhang, Fan Liu, Zhangjun Fei, Yong Xu
Localization shift of a sugar transporter contributes to phloem unloading in sweet watermelons. The New phytologist 227 (6) (2020)
Yingzhen Yang, José Cuenca, Nian Wang, Zhenchang Liang, Honghe Sun, Benjamin Gutierrez, Xiaojun Xi, Jie Arro, Yi Wang, Peige Fan, Jason Londo, Peter Cousins, Shaohua Li, Zhangjun Fei, Gan-Yuan Zhong
A key 'foxy' aroma gene is regulated by homology-induced promoter indels in the iconic juice grape 'Concord'. Horticulture research 7 (2020)
Yue Liang, Chuyan Jiang, Yang Liu, Yuerong Gao, Jingyun Lu, Palinuer Aiwaili, Zhangjun Fei, Cai-Zhong Jiang, Bo Hong, Chao Ma, Junping Gao
Auxin Regulates Sucrose Transport to Repress Petal Abscission in Rose (Rosa hybrida). The Plant cell 32 (11) (2020)
Chenxi Zhou, Bode Olukolu, Dorcus C Gemenet, Shan Wu, Wolfgang Gruneberg, Minh Duc Cao, Zhangjun Fei, Zhao-Bang Zeng, Andrew W George, Awais Khan, G Craig Yencho, Lachlan J M Coin
Assembly of whole-chromosome pseudomolecules for polyploid plant genomes using outbred mapping populations. Nature genetics 52 (11) (2020)
Xuepeng Sun, Chen Jiao, Heidi Schwaninger, C Thomas Chao, Yumin Ma, Naibin Duan, Awais Khan, Seunghyun Ban, Kenong Xu, Lailiang Cheng, Gan-Yuan Zhong, Zhangjun Fei
Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication. Nature genetics 52 (12) (2020)
Monica Rodriguez, Alessandro Scintu, Chiara M Posadinu, Yimin Xu, Cuong V Nguyen, Honghe Sun, Elena Bitocchi, Elisa Bellucci, Roberto Papa, Zhangjun Fei, James J Giovannoni, Domenico Rau, Giovanna Attene
GWAS Based on RNA-Seq SNPs and High-Throughput Phenotyping Combined with Climatic Data Highlights the Reservoir of Valuable Genetic Diversity in Regional Tomato Landraces. Genes 11 (11) (2020)
Daniel K Hasegawa, Md Shamimuzzaman, Wenbo Chen, Alvin M Simmons, Zhangjun Fei, Kai-Shu Ling
Deep Sequencing of Small RNAs in the Whitefly Bemisia tabaci Reveals Novel MicroRNAs Potentially Associated with Begomovirus Acquisition and Transmission. Insects 11 (9) (2020)
Everlyne Nafula Wosula, Wenbo Chen, Massoud Amour, Zhangjun Fei, James Peter Legg
KASP Genotyping as a Molecular Tool for Diagnosis of Cassava-Colonizing Bemisia tabaci. Insects 11 (5) (2020)
Wen Xie, Chao He, Zhangjun Fei, You-Jun Zhang
Chromosome-level genome assembly of the greenhouse whitefly (Trialeurodes vaporariorum Westwood). Molecular ecology resources 20 (4) (2020)
Junyang Yue, Jiacheng Liu, Wei Tang, Ya Qing Wu, Xiaofeng Tang, Wei Li, Ying Yang, Lihuan Wang, Shengxiong Huang, Congbing Fang, Kun Zhao, Zhangjun Fei, Yongsheng Liu, Yi Zheng
Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics. Horticulture research 7 (1) (2020)
Xing Ma, Nicole T Perna, Jeremy D Glasner, Jianjun Hao, Steven Johnson, Afnan Shazwan Nasaruddin, Amy O Charkowski, Shan Wu, Zhangjun Fei, Keith L Perry, Paul Stodghill, Bryan Swingle
Complete Genome Sequence of Dickeya dianthicola ME23, a Pathogen Causing Blackleg and Soft Rot Diseases of Potato. Microbiology resource announcements 8 (7) (2019)
Shaogui Guo, Shengjie Zhao, Honghe Sun, Xin Wang, Shan Wu, Tao Lin, Yi Ren, Lei Gao, Yun Deng, Jie Zhang, Xuqiang Lu, Haiying Zhang, Jianli Shang, Guoyi Gong, Changlong Wen, Nan He, Shouwei Tian, Maoying Li, Junpu Liu, Yanping Wang, Yingchun Zhu, Robert Jarret, Amnon Levi, Xingping Zhang, Sanwen Huang, Zhangjun Fei, Wenge Liu, Yong Xu
Resequencing of 414 cultivated and wild watermelon accessions identifies selection for fruit quality traits. Nature genetics 51 (11) (2019)
Wenli Liu, Jing Zhang, Chen Jiao, Xueren Yin, Zhangjun Fei, Qingbiao Wu, Kunsong Chen
Transcriptome analysis provides insights into the regulation of metabolic processes during postharvest cold storage of loquat (Eriobotrya japonica) fruit. Horticulture research 6 (2019)
Chellappan Padmanabhan, Qiyue Ma, Reza Shekasteband, Kevin S Stewart, Samuel F Hutton, John W Scott, Zhangjun Fei, Kai-Shu Ling
Comprehensive transcriptome analysis and functional characterization of PR-5 for its involvement in tomato Sw-7 resistance to tomato spotted wilt tospovirus. Scientific reports 9 (1) (2019)
Anquan Wang, Danyang Chen, Qiyue Ma, Jocelyn K C Rose, Zhangjun Fei, Yongsheng Liu, James J Giovannoni
The tomato HIGH PIGMENT1/DAMAGED DNA BINDING PROTEIN 1 gene contributes to regulation of fruit ripening. Horticulture research 6 (2019)
Lena Maria Müller, Kristyna Flokova, Elise Schnabel, Xuepeng Sun, Zhangjun Fei, Julia A Frugoli, Harro J Bouwmeester, Maria J Harrison
A CLE-SUNN module regulates strigolactone content and fungal colonization in arbuscular mycorrhiza. Nature plants 5 (9) (2019)
Anita Shrestha, Kan Bao, Wenbo Chen, Ping Wang, Zhangjun Fei, Gary W Blissard
Transcriptional Responses of the Trichoplusia ni Midgut to Oral Infection by the Baculovirus Autographa californica Multiple Nucleopolyhedrovirus. Journal of virology 93 (14) (2019)
Lei Gao, Itay Gonda, Honghe Sun, Qiyue Ma, Kan Bao, Denise M Tieman, Elizabeth A Burzynski-Chang, Tara L Fish, Kaitlin A Stromberg, Gavin L Sacks, Theodore W Thannhauser, Majid R Foolad, Maria Jose Diez, Jose Blanca, Joaquin Canizares, Yimin Xu, Esther van der Knaap, Sanwen Huang, Harry J Klee, James J Giovannoni, Zhangjun Fei
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor. Nature genetics 51 (6) (2019)
Marina A Pombo, Romina N Ramos, Yi Zheng, Zhangjun Fei, Gregory B Martin, Hernan G Rosli
Transcriptome-based identification and validation of reference genes for plant-bacteria interaction studies using Nicotiana benthamiana. Scientific reports 9 (1) (2019)
Katchen Julliany Pereira Silva, Jugpreet Singh, Ryland Bednarek, Zhangjun Fei, Awais Khan
Differential gene regulatory pathways and co-expression networks associated with fire blight infection in apple (Malus × domestica). Horticulture research 6 (2019)
Shan Wu, Xin Wang, Umesh Reddy, Honghe Sun, Kan Bao, Lei Gao, Linyong Mao, Takshay Patel, Carlos Ortiz, Venkata L Abburi, Padma Nimmakayala, Sandra Branham, Pat Wechter, Laura Massey, Kai-Shu Ling, Chandrasekar Kousik, Sue A Hammar, Yaakov Tadmor, Vitaly Portnoy, Amit Gur, Nurit Katzir, Nihat Guner, Angela Davis, Alvaro G Hernandez, Chris L Wright, Cecilia McGregor, Robert Jarret, Xingping Zhang, Yong Xu, Todd C Wehner, Rebecca Grumet, Amnon Levi, Zhangjun Fei
Genome of 'Charleston Gray', the principal American watermelon cultivar, and genetic characterization of 1,365 accessions in the U.S. National Plant Germplasm System watermelon collection. Plant biotechnology journal 17 (12) (2019)
Guangwei Zhao, Qun Lian, Zhonghua Zhang, Qiushi Fu, Yuhua He, Shuangwu Ma, Valentino Ruggieri, Antonio Jose Monforte, Pingyong Wang, Irene Julca, Huaisong Wang, Junpu Liu, Yong Xu, Runze Wang, Jiabing Ji, Zhihong Xu, Weihu Kong, Yang Zhong, Jianli Shang, Lara Pereira, Jason Argyris, Jian Zhang, Carlos Mayobre, Marta Pujol, Elad Oren, Diandian Ou, Jiming Wang, Dexi Sun, Shengjie Zhao, Yingchun Zhu, Na Li, Nurit Katzir, Amit Gur, Catherine Dogimont, Hanno Schäfer, Wei Fan, Abdelhafid Bendahmane, Zhangjun Fei, Michel Pitrat, Toni Gabaldón, Tao Lin, Jordi Garcia-Mas, Yongyang Xu, Sanwen Huang
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits. Nature genetics 51 (11) (2019)
Álvaro Piedra-Aguilera, Chen Jiao, Ana P Luna, Francisco Villanueva, Marc Dabad, Anna Esteve-Codina, Juan A Díaz-Pendón, Zhangjun Fei, Eduardo Rodríguez Bejarano, Araceli G Castillo
Integrated single-base resolution maps of transcriptome, sRNAome and methylome of Tomato yellow leaf curl virus (TYLCV) in tomato. Scientific reports 9 (1) (2019)
Xin Wang, Kan Bao, Umesh K Reddy, Yang Bai, Sue A Hammar, Chen Jiao, Todd C Wehner, Axel O Ramírez-Madera, Yiqun Weng, Rebecca Grumet, Zhangjun Fei
The USDA cucumber (Cucumis sativus L.) collection: genetic diversity, population structure, genome-wide association studies, and core collection development. Horticulture research 5 (2018)
Shan Wu, Kin H Lau, Qinghe Cao, John P Hamilton, Honghe Sun, Chenxi Zhou, Lauren Eserman, Dorcus C Gemenet, Bode A Olukolu, Haiyan Wang, Emily Crisovan, Grant T Godden, Chen Jiao, Xin Wang, Mercy Kitavi, Norma Manrique-Carpintero, Brieanne Vaillancourt, Krystle Wiegert-Rininger, Xinsun Yang, Kan Bao, Jennifer Schaff, Jan F Kreuze, Wolfgang Gruneberg, Awais Khan, Marc Ghislain, Daifu Ma, Jiming Jiang, Robert O M Mwanga, James H Leebens-Mack, Lachlan J M Coin, G Craig Yencho, C Robin Buell, Zhangjun Fei
Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement. Nature communications 9 (1) (2018)
Peitao Lü, Sheng Yu, Ning Zhu, Yun-Ru Chen, Biyan Zhou, Yu Pan, David Tzeng, Joao Paulo Fabi, Jason Argyris, Jordi Garcia-Mas, Nenghui Ye, Jianhua Zhang, Donald Grierson, Jenny Xiang, Zhangjun Fei, James Giovannoni, Silin Zhong
Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening. Nature plants 4 (10) (2018)
Xiaolei Sui, Jing Nie, Xin Li, Michael J Scanlon, Cankui Zhang, Yi Zheng, Si Ma, Nan Shan, Zhangjun Fei, Robert Turgeon, Zhenxian Zhang
Transcriptomic and functional analysis of cucumber (Cucumis sativus L.) fruit phloem during early development. The Plant journal : for cell and molecular biology 96 (5) (2018)
Yoshihito Shinozaki, Philippe Nicolas, Noe Fernandez-Pozo, Qiyue Ma, Daniel J Evanich, Yanna Shi, Yimin Xu, Yi Zheng, Stephen I Snyder, Laetitia B B Martin, Eliel Ruiz-May, Theodore W Thannhauser, Kunsong Chen, David S Domozych, Carmen Catalá, Zhangjun Fei, Lukas A Mueller, James J Giovannoni, Jocelyn K C Rose
High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening. Nature communications 9 (1) (2018)
Anita Shrestha, Kan Bao, Yun-Ru Chen, Wenbo Chen, Ping Wang, Zhangjun Fei, Gary W Blissard
Global Analysis of Baculovirus Autographa californica Multiple Nucleopolyhedrovirus Gene Expression in the Midgut of the Lepidopteran Host Trichoplusia ni. Journal of virology 92 (23) (2018)
Chao Xia, Yi Zheng, Jing Huang, Xiangjun Zhou, Rui Li, Manrong Zha, Shujuan Wang, Zhiqiang Huang, Hai Lan, Robert Turgeon, Zhangjun Fei, Cankui Zhang
Elucidation of the Mechanisms of Long-Distance mRNA Movement in a Nicotiana benthamiana/Tomato Heterograft System. Plant physiology 177 (2) (2018)
Xuepeng Sun, Wenbo Chen, Sergey Ivanov, Allyson M MacLean, Haley Wight, Thiruvarangan Ramaraj, Joann Mudge, Maria J Harrison, Zhangjun Fei
Genome and evolution of the arbuscular mycorrhizal fungus Diversispora epigaea (formerly Glomus versiforme) and its bacterial endosymbionts. The New phytologist 221 (3) (2018)

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Zhangjun Fei