John P Hamilton

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 16

Top Topics

Network Analysis

Gene Expression

Top Venues

The plant genome

G3 (Bethesda, Md.)

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Jeffrey B Endelman, Moctar Kante, Hannele Lindqvist-Kreuze, Andrzej Kilian, Laura M Shannon, Maria V Caraza-Harter, Brieanne Vaillancourt, Kathrine Mailloux, John P Hamilton, Carol Robin Buell
Targeted genotyping-by-sequencing of potato and data analysis with R/polyBreedR. The plant genome (2024)
Mercy Kitavi, Dorcus C Gemenet, Joshua C Wood, John P Hamilton, Shan Wu, Zhangjun Fei, Awais Khan, Carol Robin Buell
Identification of genes associated with abiotic stress tolerance in sweetpotato using weighted gene co-expression network analysis. Plant direct 7 (10) (2023)
Jenna M Hershberger, Ryokei Tanaka, Joshua C Wood, Nicholas Kaczmar, Di Wu, John P Hamilton, Dean DellaPenna, Carol Robin Buell, Michael A Gore
Transcriptome-wide association and prediction for carotenoids and tocochromanols in fresh sweet corn kernels. The plant genome 15 (2) (2022)
Di Wu, Xiaowei Li, Ryokei Tanaka, Joshua C Wood, Laura E Tibbs-Cortes, Maria Magallanes-Lundback, Nolan Bornowski, John P Hamilton, Brieanne Vaillancourt, Christine Helen Diepenbrock, Xianran Li, Nicholas T Deason, Gregory R Schoenbaum, Jianming Yu, Carol Robin Buell, Dean DellaPenna, Michael A Gore
Combining GWAS and TWAS to identify candidate causal genes for tocochromanol levels in maize grain. Genetics 221 (4) (2022)
Genevieve M Hoopes, Daniel Zarka, Ann M Feke, Kaitlyn Acheson, John P Hamilton, David S Douches, Carol Robin Buell, Eva M Farré
Keeping time in the dark: Potato diel and circadian rhythmic gene expression reveals tissue-specific circadian clocks. Plant direct 6 (7) (2022)
Ryokei Tanaka, Di Wu, Xiaowei Li, Laura E Tibbs-Cortes, Joshua C Wood, Maria Magallanes-Lundback, Nolan Bornowski, John P Hamilton, Brieanne Vaillancourt, Xianran Li, Nicholas T Deason, Gregory R Schoenbaum, Carol Robin Buell, Dean DellaPenna, Jianming Yu, Michael A Gore
Leveraging prior biological knowledge improves prediction of tocochromanols in maize grain. The plant genome (2022)
Matheus Baseggio, Matthew Murray, Di Wu, Gregory Ziegler, Nicholas Kaczmar, James Chamness, John P Hamilton, Carol Robin Buell, Olena K Vatamaniuk, Edward S Buckler, Margaret E Smith, Ivan R Baxter, William F Tracy, Michael A Gore
Genome-wide association study suggests an independent genetic basis of zinc and cadmium concentrations in fresh sweet corn kernels. G3 (Bethesda, Md.) 11 (8) (2022)
Christine Helen Diepenbrock, Daniel C Ilut, Maria Magallanes-Lundback, Catherine B Kandianis, Alexander E Lipka, Peter J Bradbury, James B Holland, John P Hamilton, Edmund Wooldridge, Brieanne Vaillancourt, Elsa G Ngora-Castillo, Mitchell Tuinstra, Jason Cepela, Maria Mateos-Hernandez, Brenda F Owens, Tyler Tiede, Edward S Buckler, Torbert Rocheford, Carol Robin Buell, Michael A Gore, Dean DellaPenna
Eleven biosynthetic genes explain the majority of natural variation in carotenoid levels in maize grain. The Plant cell 33 (4) (2021)
Samira Mafi Moghaddam, Atena Oladzad, Chushin Koh, Larissa Ramsay, John P Hart, Sujan Mamidi, Genevieve M Hoopes, Avinash Sreedasyam, Andrew Wiersma, Dongyan Zhao, Jerry W Jenkins, John P Hamilton, Jerry W Jenkins, Brieanne Vaillancourt, Joshua C Wood, Jeremy Schmutz, Sateesh Kagale, Timothy Porch, Kirstin E Bett, Carol Robin Buell, Phillip E McClean
The tepary bean genome provides insight into evolution and domestication under heat stress. Nature communications 12 (1) (2021)
Benjamin R Lichman, Grant T Godden, John P Hamilton, Lira Palmer, Mohamed O Kamileen, Dongyan Zhao, Brieanne Vaillancourt, Joshua C Wood, Miao Sun, Taliesin J Kinser, Laura K Henry, Carlos Rodriguez-Lopez, Natalia Dudareva, Douglas Edward Soltis, Pamela S Soltis, Carol Robin Buell, Sarah Ellen O'connor
The evolutionary origins of the cat attractant nepetalactone in catnip. Science advances 6 (20) (2020)
Qian Zhou, Dié Tang, Wu Huang, Zhongmin Yang, Yu Zhang, John P Hamilton, Richard G F Visser, Christian W B Bachem, C Robin Buell, Zhonghua Zhang, Chunzhi Zhang, Sanwen Huang
Haplotype-resolved genome analyses of a heterozygous diploid potato. Nature genetics 52 (10) (2020)
Michael A Hardigan, F Parker E Laimbeer, John P Hamilton, Brieanne Vaillancourt, David S Douches, Eva M Farré, Richard E Veilleux, Carol Robin Buell
Reply to Huang et al.: Avoiding "one-size-fits-all" approaches to variant discovery. Proceedings of the National Academy of Sciences of the United States of America 115 (28) (2018)
Shan Wu, Kin H Lau, Qinghe Cao, John P Hamilton, Honghe Sun, Chenxi Zhou, Lauren Eserman, Dorcus C Gemenet, Bode A Olukolu, Haiyan Wang, Emily Crisovan, Grant T Godden, Chen Jiao, Xin Wang, Mercy Kitavi, Norma Manrique-Carpintero, Brieanne Vaillancourt, Krystle Wiegert-Rininger, Xinsun Yang, Kan Bao, Jennifer Schaff, Jan F Kreuze, Wolfgang Gruneberg, Awais Khan, Marc Ghislain, Daifu Ma, Jiming Jiang, Robert O M Mwanga, James H Leebens-Mack, Lachlan J M Coin, G Craig Yencho, C Robin Buell, Zhangjun Fei
Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement. Nature communications 9 (1) (2018)
Genevieve M Hoopes, John P Hamilton, Jeongwoon Kim, Dongyan Zhao, Krystle Wiegert-Rininger, Emily Crisovan, C Robin Buell
Genome Assembly and Annotation of the Medicinal Plant Calotropis gigantea, a Producer of Anticancer and Antimalarial Cardenolides. G3 (Bethesda, Md.) 8 (2) (2018)
Courtney P Leisner, John P Hamilton, Emily Crisovan, Norma C Manrique-Carpintero, Alexandre P Marand, Linsey Newton, Gina M Pham, Jiming Jiang, David S Douches, Shelley H Jansky, C Robin Buell
Genome sequence of M6, a diploid inbred clone of the high-glycoalkaloid-producing tuber-bearing potato species Solanum chacoense, reveals residual heterozygosity. The Plant journal : for cell and molecular biology 94 (3) (2018)
Dongyan Zhao, John P Hamilton, Michael Hardigan, Dongmei Yin, Tao He, Brieanne Vaillancourt, Mauricio Alberto Reynoso, Germain Pauluzzi, Scott A Funkhouser, Yuehua Cui, Julia Bailey-Serres, Jiming Jiang, Carol Robin Buell, Ning Jiang
Analysis of Ribosome-Associated mRNAs in Rice Reveals the Importance of Transcript Size and GC Content in Translation. G3 (Bethesda, Md.) 7 (1) (2017)