Thomas M Keane (Thomas Keane)

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 14

Top Venues

Nature communications

Nucleic acids research

Bioinformatics advances

Genome research

European Bioinformatics Institute

This page only lists publications with an associated author ORCID identifier.

Affiliation History

European Bioinformatics Institute Nov 07 2016

United Kingdom

Team Leader: EGA, EVA, and ENA archive infrastructure

Wellcome Trust Sanger Institute May 31 2006 - Nov 04 2016

United Kingdom

Senior scientific manager

Publications

Lennart F Johansson, Steven Laurie, J Dylan Spalding, Spencer J Gibson, David Ruvolo, Coline Thomas, Davide Piscia, Fernanda de Andrade, Gerieke Been, Marieke Bijlsma, Han G Brunner, Sandi Cimerman, Farid Yavari Dizjikan, Kornelia Ellwanger, Marcos Fernandez-Callejo, Mallory Ann Freeberg, Gert-Jan van de Geijn, Roan Kanninga, Vatsalya Maddi, Mehdi Mehtarizadeh, Pieter B Neerincx, Stephan Ossowski, Ana Rath, Dieuwke Roelofs-Prins, Marloes Stok-Benjamins, K Joeri Van der Velde, Colin D Veal, Gerben van der Vries, Marc Wadsley, Gregory Warren, Birte Zurek, Thomas M Keane, Holm Graessner, Sergi Beltran, Morris A Swertz, Anthony J Brookes, null null
An interconnected data infrastructure to support large-scale rare disease research. GigaScience 13 (2024)
April Shen, Marcos Casado Barbero, Baron Koylass, Kirill Tsukanov, Timothee Cezard, Thomas M Keane
CMAT: ClinVar Mapping and Annotation Toolkit. Bioinformatics advances 4 (1) (2024)
April Shen, Marcos Casado Barbero, Baron Koylass, Kirill Tsukanov, Timothee Cezard, Thomas M Keane
CMAT: ClinVar Mapping and Annotation Toolkit. Bioinformatics advances 4 (1) (2024)
Matthew Thakur, Alex Bateman, Cath Brooksbank, Mallory Ann Freeberg, Melissa Harrison, Matthew Hartley, Thomas M Keane, Gerard Kleywegt, Andrew Leach, Mariia Levchenko, Sarah Morgan, Ellen M McDonagh, Sandra E Orchard, Irene Papatheodorou, Sameer Velankar, Juan Antonio Vizcaino, Rick Witham, Barbara Zdrazil, Johanna McEntyre
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022. Nucleic acids research (2022)
Thomas M Keane, Claire O'Donovan, Juan Antonio Vizcaino
The growing need for controlled data access models in clinical proteomics and metabolomics. Nature communications 12 (1) (2021)
Timothee Cezard, Fiona Cunningham, Sarah E Hunt, Baron Koylass, Nitin Kumar, Gary Saunders, April Shen, Andres F Silva, Kirill Tsukanov, Sundararaman Venkataraman, Paul Flicek, Helen Parkinson, Thomas M Keane
The European Variation Archive: a FAIR resource of genomic variation for all species. Nucleic acids research (2021)
Mallory Ann Freeberg, Lauren A Fromont, Daniel Barrowdale, Anna Foix Romero, Jorge Izquierdo Ciges, Aina Jene, Giselle Kerry, Mauricio Moldes, Roberto Ariosa, Silvia Bahena, Daniel Barrowdale, Marcos Casado Barbero, Dietmar Fernandez-Orth, Carles Garcia-Linares, Emilio Garcia-Rios, Frédéric Haziza, Bela Juhasz, Oscar Martinez Llobet, Gemma Milla, Anand Mohan, Manuel Rueda, Aravind Sankar, Dona Shaju, Ashutosh Shimpi, Babita Singh, Coline Thomas, Sabela de la Torre, Umuthan Uyan, Claudia Vasallo, Paul Flicek, Roderic Guigo, Arcadi Navarro, Helen Parkinson, Thomas M Keane, Jordi Rambla
The European Genome-phenome Archive in 2021. Nucleic acids research (2021)
Cristina Sisu, Paul Muir, Adam Frankish, Ian Fiddes, Mark E Diekhans, David Thybert, Duncan T Odom, Paul Flicek, Thomas M Keane, Tim Hubbard, Jennifer Harrow, Mark B Gerstein
Transcriptional activity and strain-specific history of mouse pseudogenes. Nature communications 11 (1) (2020)
Jingtao Lilue, Anu Shivalikanjli, David J Adams, Thomas M Keane
Mouse protein coding diversity: What's left to discover? PLoS genetics 15 (11) (2019)
Sarah J Lindsay, Raheleh Rahbari, Joanna Kaplanis, Thomas M Keane, Matthew E Hurles
Similarities and differences in patterns of germline mutation between mice and humans. Nature communications 10 (1) (2019)
Jingtao Lilue, Anthony G Doran, Ian T Fiddes, Monica Abrudan, Joel Armstrong, Ruth Bennett, William Chow, Joanna Collins, Stephan Collins, Anne Czechanski, Petr Danecek, Mark E Diekhans, Dirk-Dominik Dolle, Matt Dunn, Richard Durbin, Dent Earl, Anne Ferguson-Smith, Paul Flicek, Jonathan Flint, Adam Frankish, Beiyuan Fu, Mark B Gerstein, James Gilbert, Leo Goodstadt, Jennifer Harrow, Kerstin Howe, Ximena Ibarra-Soria, Mikhail Kolmogorov, Christopher J Lelliott, Darren W Logan, Jane Loveland, Clayton E Mathews, Richard F Mott, Paul Muir, Stefanie Nachtweide, Fábio C P Navarro, Duncan T Odom, Naomi Park, Sarah Pelan, Son K Pham, Mike Quail, Laura Reinholdt, Lars Romoth, Lesley Shirley, Cristina Sisu, Marcela K Sjöberg-Herrera, Mario Stanke, Charles Steward, Mark Thomas, Glen Threadgold, David Thybert, James Torrance, Kim Wong, Jonathan Wood, Binnaz Yalcin, Fengtang Yang, David J Adams, Benedict Paten, Thomas M Keane
Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci. Nature genetics 50 (11) (2018)
Iain M Dykes, Dorota Szumska, Linta Kuncheria, Rathi Puliyadi, Chiann-Mun Chen, Costis Papanayotou, Helen Lockstone, Christèle Dubourg, Véronique David, Jurgen E Schneider, Thomas M Keane, David J Adams, Steve D M Brown, Sandra Mercier, Sylvie Odent, Jérôme Collignon, Shoumo Bhattacharya
A Requirement for Zic2 in the Regulation of Nodal Expression Underlies the Establishment of Left-Sided Identity. Scientific reports 8 (1) (2018)
Andrew P Morgan, Daniel M Gatti, Maya L Najarian, Thomas M Keane, Raymond J Galante, Allan I Pack, Richard F Mott, Gary A Churchill, Fernando Pardo-Manuel de Villena
Structural Variation Shapes the Landscape of Recombination in Mouse. Genetics 206 (2) (2017)
Dirk D Dolle, Zhicheng Liu, Matthew Cotten, Jared T Simpson, Zamin Iqbal, Richard Durbin, Shane A McCarthy, Thomas M Keane
Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes. Genome research 27 (2) (2016)

Thomas M Keane.css-eqlu8i{font-size:small;padding-left:4px;} (Thomas Keane)

Publication Activity (10 Years)

Top Topics

Top Venues

Thomas M Keane (Thomas Keane)