STAR protocols

Keyphrases

Publications

volume 5, number 3, 2024

Juan Wang, Yi Liu, Xizhao Chen, Mansheng Li, Yunping Zhu
Protocol for identifying and comparing molecular prognosis subtypes of IgAN using R. STAR protocols 5 (3) (2024)
Manuela Carnaghi, Federico Mandelli, Lionel Feugère, Jillian Joiner, Steven R Belmain, Richard J Hopkins, Frances M Hawkes
Protocol for rearing and using mosquitoes for flight path tracking and behavioral characterization in wind tunnel bioassays. STAR protocols 5 (3) (2024)
Alexsandra Zimmer, Eric R Wang, Gaurav Choudhary, Peng Zhang
Protocol for simultaneous isolation of high-quality and high-quantity cardiomyocytes and non-myocyte cells from adult rat hearts. STAR protocols 5 (3) (2024)
Giselle Cheung, Florian M Pauler, Peter Koppensteiner, Simon Hippenmeyer
Protocol for mapping cell lineage and cell-type identity of clonally-related cells in situ using MADM-CloneSeq. STAR protocols 5 (3) (2024)
Cristina C DeOliveira, Changfan Lin, Brian R Crane
Protocol to detect and quantify interactions between proteins expressed in Drosophila S2 cells. STAR protocols 5 (3) (2024)
Yu-Nan Chen, Johanna K Kostka, Sebastian H Bitzenhofer, Ileana L Hanganu-Opatz
Protocol for adeno-associated virus-mediated optogenetic activation of olfactory output neurons in neonatal mice. STAR protocols 5 (3) (2024)
Granton A Jindal, Fabian Lim, Krissie Tellez, Benjamin P Song, Alexis T Bantle, Emma K Farley
Protocol to electroporate DNA plasmids into Ciona robusta embryos at the 1-cell stage. STAR protocols 5 (3) (2024)
Camilla Ciolli Mattioli, Roi Avraham
Protocol for comparing ribosomal levels in single bacterial cells at different growth stages using rRNA-FISH. STAR protocols 5 (3) (2024)
Sayuri Miyauchi, Kei-Ichiro Arimoto, Mengdan Liu, Yue Zhang, Dong-Er Zhang
Protocol to study the immune profile of syngeneic mouse tumor models. STAR protocols 5 (3) (2024)
Akira C Saito, Tomohito Higashi, Hideki Chiba
Protocol for establishing knockout cell clones by deletion of a large gene fragment using CRISPR-Cas9 with multiple guide RNAs. STAR protocols 5 (3) (2024)
Nidhi Sharma, Filipe Marques, Paschalis Kratsios
Protocol for auxin-inducible protein degradation in C. elegans using different auxins and TIR1-expressing strains. STAR protocols 5 (3) (2024)
Mohammad Askandar Iqbal, Kirk Smith, Prithvi Singh, Shumaila Siddiqui, Sriram Chandrasekaran
Protocol for performing metabolic pathway-based subtyping of breast tumors. STAR protocols 5 (3) (2024)
Liming Wang, Mark J Dresel, Monique Robinson, Enver Cagri Izgu
Protocol for building synthetic protocell membranes that sense redox using synthetic phospholipids and natural lipids. STAR protocols 5 (3) (2024)
Sandra Schrenk, Lindsay J Bischoff, Elisa Boscolo
Protocol for three-dimensional whole-mount imaging of the vascular network in the intestinal muscle. STAR protocols 5 (3) (2024)
Lukas Amon, Anna Seichter, Damir Vurnek, Giorgi Tchitashvili, Isabel Heß, Lukas Heger, Christian H K Lehmann, Diana Dudziak
Protocol for mapping the heterogeneous dendritic cell network across the murine tissue landscape via high-dimensional flow cytometry. STAR protocols 5 (3) (2024)
Daniil Berezhnoi, Hiba Douja Chehade, Hong-Yuan Chu
Open-source platform for kinematic analysis of mouse forelimb movement. STAR protocols 5 (3) (2024)
Flavia Tortolici, Claudia Di Biagio, Daniele Lettieri-Barbato, Katia Aquilano
Protocol for detecting mitochondria extracellular vesicles of brown adipose tissue in mice. STAR protocols 5 (3) (2024)
Chandana Basak, Ranadhir Chakraborty
Protocol to establish a disease model in Lepidocephalichthys guntea using Aeromonas hydrophila. STAR protocols 5 (3) (2024)
Changhua Mu, Xiaoxi Liu, Andrew Riselli, James Slater, Evelyn Escobar, Duy Dang, Scott Drapeau, Romelyn Delos Santos, Stacy Andosca, Hao Nguyen, Peder E Z Larson, Robert Bok, Daniel B Vigneron, John Kurhanewicz, David M Wilson, Robert R Flavell
Protocol for producing hyperpolarized 13 C-bicarbonate for clinical MRI of extracellular pH in aggressive tumors. STAR protocols 5 (3) (2024)
Goutam Banerjee, Suraya Rahman Papri, Pratik Banerjee
Protocol for the construction and functional profiling of metagenome-assembled genomes for microbiome analyses. STAR protocols 5 (3) (2024)
Weiyu Bai
Protocol to develop a chemotherapy drug screening process by constructing a cancer prognostic model using public databases. STAR protocols 5 (3) (2024)
Tiffany Cloâtre, Magali Mondin, Jean-Baptiste Sibarita, Florian Levet, Olivier Thoumine
Protocol for matching protein localization to synapse morphology in primary rat neurons by correlative super-resolution microscopy. STAR protocols 5 (3) (2024)
Akin Cayir, Tone M Tannæs, Sadia Saeed, Matthias Blüher, Yvonne Böttcher
Protocol for chromatin immunoprecipitation of histone modifications in frozen adipose tissue. STAR protocols 5 (3) (2024)
Pratibha Sharma, Vinay K Puduvalli
Protocol for real-time assessment of mitochondrial and glycolytic ATP production in patient-derived glioma stem-like cells. STAR protocols 5 (3) (2024)
Zi-Ling Qu, Yi-Bing Zhang
Protocol for linking enhanced interferon immunity to virus resistance in gene-knockout zebrafish. STAR protocols 5 (3) (2024)
Arthi Shanmugavadivu, Katlynn Carter, Aysan Poursadegh Zonouzi, Ari Waisman, Tommy Regen
Protocol for the collection and analysis of the different immune cell subsets in the murine intestinal lamina propria. STAR protocols 5 (3) (2024)
Gustavo Aguilar, Milena Bauer, M Alessandra Vigano, Isabel Guerrero, Markus Affolter
Protocol for generating in-frame seamless knockins in Drosophila using the SEED/Harvest technology. STAR protocols 5 (3) (2024)
Nadendla EswarKumar, Kumar TewarySunil, Meng-Chiao Ho
Protocol for phospho-SrcKD: rPTPεD1 complex preparation and BLI binding assays to demonstrate their exosite interface. STAR protocols 5 (3) (2024)
Mohammad Hossein Afsharian, Reza Mahdavian, Abdollah Allahverdi
Protocol for fabrication of nanosubstrate embedded with nanogroove topography coated by a layer of nanocomposite for neuronal differentiation. STAR protocols 5 (3) (2024)
Tias Verhezen, Ho Wa Lau, Jonas Van Audenaerde, An Wouters, Evelien Smits, Jorrit De Waele
Protocol for genomic editing in human resting primary NK cells and NK-92 cells via CRISPR-Cas9 ribonucleoproteins. STAR protocols 5 (3) (2024)
Chun I Yu, Rick Maser, Florentina Marches, Jacques Banchereau, Karolina Palucka
Protocol to construct humanized mice with adult CD34 + hematopoietic stem and progenitor cells. STAR protocols 5 (3) (2024)

volume 5, number 4, 2024

Keimpe Wierda, Hajnalka Nyitrai, Amélie Lejeune, Ine Vlaeminck, Elke Leysen, Tom Theys, Joris de Wit, Pierre Vanderhaeghen, Baptiste Libé-Philippot
Protocol to process fresh human cerebral cortex biopsies for patch-clamp recording and immunostaining. STAR protocols 5 (4) (2024)
Shannon N Geels, Claire Murat, Alexander Moshensky, Shivashankar Othy, Francesco Marangoni
Protocol to quantify the activation dynamics of tumor-associated T cells in mice by functional intravital microscopy. STAR protocols 5 (4) (2024)
Ben Haspels, Maayke M P Kuijten
Protocol for formation, staining, and imaging of 3D breast cancer models using MicroTissues mold systems. STAR protocols 5 (4) (2024)
Yuval Shapir Itai, Ziv Porat, Rony Dahan
Protocol for assessing murine cell doublet engagement and subsequent effects using flow cytometry and imaging flow cytometry. STAR protocols 5 (4) (2024)
Chaofei Su, Tian Cheng, Hanyi Zhang, Hang Yin
Click-chemistry-based protocol for detecting 4-octyl-itaconate-alkylated proteins in primary mouse macrophages. STAR protocols 5 (4) (2024)
Swagata Dey, Andrew Kovalenko, Avraham Yaron
Protocol for semiautomated analysis of sensory neuronal innervation of the mouse footpad skin. STAR protocols 5 (4) (2024)
Teresa Ubina, William Agnew-Svoboda, Zoe A Figueroa, Emma H Wilson, Todd A Fiacco, Martin M Riccomagno
Protocol for the longitudinal study of neuroinflammation and reactive astrocytes in Lcn2CreERT2 mice. STAR protocols 5 (4) (2024)
Austin Merchant, Xuguo Zhou
Protocol for whole-mount immunostaining of brains of the eastern subterranean termite, Reticulitermes flavipes. STAR protocols 5 (4) (2024)
Enoch Mbawin Alale, Samuel Kofi Tulashie, Emmanuel Boafo Baidoo, Caleb Mununkum Addai
Protocol for extracting oil from Ghana shea nuts using solvent extraction. STAR protocols 5 (4) (2024)
Luoyi Li, Ningning Zhang, Carla Pantoja, Yadong Wang, Jun Lu
Protocol for detecting glycoRNAs using metabolic labeling and northwestern blot. STAR protocols 5 (4) (2024)
Lingyuan Zeng, Hao Li
Protocol for rapid evaluation of antibody-mediated protection in macrophages using immunofluorescence techniques. STAR protocols 5 (4) (2024)
Junpeng Zhang, Xuemei Wei, Chunwen Zhao, Haolin Yang
Protocol to infer and analyze miRNA sponge modules in heterogeneous data using miRSM 2.0. STAR protocols 5 (4) (2024)
Sakib M Moinuddin, Md Ibrahim, Tanoy Sarkar, Md Shahadat Hossain, Melanie Rose, Fakhrul Ahsan
Protocol for quantum dot-based cell counting and immunostaining of pulmonary arterial cells from patients with pulmonary arterial hypertension. STAR protocols 5 (4) (2024)
Shaosen Zhang, Caihong Wang
Protocol to establish patient-derived xenograft and organoid for radiosensitivity of esophageal squamous cell carcinoma. STAR protocols 5 (4) (2024)
Matthew Triolo, Mireille Khacho
Protocol to monitor live-cell, real-time, mitochondrial respiration in mouse muscle cells using the Resipher platform. STAR protocols 5 (4) (2024)
Yue Hu, Abhijit Sarkar, Xiaotong Song
Protocol for preparing metabolically reprogrammed human CAR T cells and evaluating their in vitro effects. STAR protocols 5 (4) (2024)
Alok K Mishra, Shahid Banday, Ritesh P Thakare, Sunil K Malonia, Michael R Green
Protocol for monitoring phagocytosis of cancer cells by TAM-like macrophages using imaging cytometry. STAR protocols 5 (4) (2024)
Shaosen Zhang, Guoyu Cheng, Shihao Zhu, Dongxin Lin, Chen Wu
Protocol for the generation, characterization, and functional assays of organoid cultures from normal and cancer-prone human esophageal tissues. STAR protocols 5 (4) (2024)
Xiaoli Hu, Yiguo Wang
Protocol to identify receptors of secreted proteins through CRISPR-Cas9 whole-genome screening technology. STAR protocols 5 (4) (2024)