Clarence Yapp

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 20

Top Topics

Basal Cell Carcinoma

Top Venues

bioRxiv : the preprint server for biology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Felix Yuran Zhou, Clarence Yapp, Zhiguo Shang, Stephan Daetwyler, Zach Marin, Md Torikul Islam, Benjamin A Nanes, Edward Jenkins, Gabriel M Gihana, Bo-Jui Chang, Andrew Weems, Michael L Dustin, Sean J Morrison, Reto Paul Fiolka, Kevin M Dean, Andrew Jamieson, Peter Karl Sorger, Gaudenz Karl Danuser
A general algorithm for consensus 3D cell segmentation from 2D segmented stacks. bioRxiv : the preprint server for biology (2024)
Felix Yuran Zhou, Clarence Yapp, Zhiguo Shang, Stephan Daetwyler, Zach Marin, Md Torikul Islam, Benjamin A Nanes, Edward Jenkins, Gabriel M Gihana, Bo-Jui Chang, Andrew Weems, Michael L Dustin, Sean J Morrison, Reto Paul Fiolka, Kevin M Dean, Andrew Jamieson, Peter Karl Sorger, Gaudenz Karl Danuser
A general algorithm for consensus 3D cell segmentation from 2D segmented stacks. bioRxiv : the preprint server for biology (2024)
Felix Yuran Zhou, Clarence Yapp, Zhiguo Shang, Stephan Daetwyler, Zach Marin, Md Torikul Islam, Benjamin A Nanes, Edward Jenkins, Gabriel M Gihana, Bo-Jui Chang, Andrew Weems, Michael L Dustin, Sean J Morrison, Reto Paul Fiolka, Kevin M Dean, Andrew Jamieson, Peter Karl Sorger, Gaudenz Karl Danuser
A general algorithm for consensus 3D cell segmentation from 2D segmented stacks. bioRxiv : the preprint server for biology (2024)
Ajit J Nirmal, Clarence Yapp, Sandro Santagata, Peter Karl Sorger
Cell Spotter (CSPOT): A machine-learning approach to automated cell spotting and quantification of highly multiplexed tissue images. bioRxiv : the preprint server for biology (2023)
Clarence Yapp, Ajit J Nirmal, Felix Yuran Zhou, Zoltan Maliga, Paula Montero Llopis, George F Murphy, Christine G Lian, Gaudenz Karl Danuser, Sandro Santagata, Peter Karl Sorger, null null
Multiplexed 3D Analysis of Cell Plasticity and Immune Niches in Melanoma. bioRxiv : the preprint server for biology (2023)
Sandhya Prabhakaran, Clarence Yapp, Gregory J Baker, Johanna Beyer, Young Hwan Chang, Allison L Creason, Robert Krueger, Jeremy Muhlich, Nathan Heath Patterson, Kevin Sidak, Damir Sudar, Adam J Taylor, Luke Ternes, Jakob Troidl, Yubin Xie, Artem Sokolov, Darren R Tyson, null null
Addressing persistent challenges in digital image analysis of cancerous tissues. bioRxiv : the preprint server for biology (2023)
Shannon Coy, Brian Cheng, Jong Suk Lee, Rumana Rashid, Lindsay Browning, Yilin Xu, Sankha S Chakrabarty, Clarence Yapp, Sabrina J Chan, Juliann B Tefft, Emily Scott, Alexander Spektor, Keith L Ligon, Gregory J Baker, David Pellman, Peter Karl Sorger, Sandro Santagata
2D and 3D multiplexed subcellular profiling of nuclear instability in human cancer. bioRxiv : the preprint server for biology (2023)
Jia-Ren Lin, Yu-An Chen, Daniel Campton, Jeremy Cooper, Shannon Coy, Clarence Yapp, Juliann B Tefft, Erin McCarty, Keith L Ligon, Scott J Rodig, Steven Reese, Thaddeus George, Sandro Santagata, Peter Karl Sorger
High-plex immunofluorescence imaging and traditional histology of the same tissue section for discovering image-based biomarkers. Nature cancer (2023)
Shannon Coy, Shu Wang, Sylwia A Stopka, Jia-Ren Lin, Clarence Yapp, Cecily C Ritch, Lisa Salhi, Gregory J Baker, Rumana Rashid, Gerard Baquer, Michael Regan, Prasidda Khadka, Kristina A Cole, Jaeho Hwang, Patrick Y Wen, Pratiti Bandopadhayay, Mariarita Santi, Thomas De Raedt, Keith L Ligon, Nathalie Y R Agar, Peter Karl Sorger, Mehdi Touat, Sandro Santagata
Single cell spatial analysis reveals the topology of immunomodulatory purinergic signaling in glioblastoma. Nature communications 13 (1) (2022)
Ajit J Nirmal, Zoltan Maliga, Tuulia Vallius, Brian Quattrochi, Alyce A Chen, Connor A Jacobson, Roxanne J Pelletier, Clarence Yapp, Raquel Arias-Camison, Yu-An Chen, Christine G Lian, George F Murphy, Sandro Santagata, Peter Karl Sorger
The Spatial Landscape of Progression and Immunoediting in Primary Melanoma at Single-Cell Resolution. Cancer discovery 12 (6) (2022)
Denis Schapiro, Clarence Yapp, Artem Sokolov, Sheila M Reynolds, Yu-An Chen, Damir Sudar, Yubin Xie, Jeremy L Muhlich, Raquel Arias-Camison, Sarah Arena, Adam J Taylor, Milen Nikolov, Madison Tyler, Jia-Ren Lin, Erik A Burlingame, null null, Young Hwan Chang, Samouil L Farhi, Vesteinn Thorsson, Nithya Venkatamohan, Julia L Drewes, Dana Pe'er, David A Gutman, Markus D Herrmann, Nils Gehlenborg, Peter Bankhead, Joseph T Roland, John M Herndon, Michael Paul Snyder, R Michael Angelo, Garry Nolan, Jason R Swedlow, Nikolaus Schultz, Daniel T Merrick, Sarah A Mazzili, Ethan Cerami, Scott J Rodig, Sandro Santagata, Peter Karl Sorger
MITI minimum information guidelines for highly multiplexed tissue images. Nature methods 19 (3) (2022)
Daniel Reichart, Eric Lars-Helge Lindberg, Henrike Maatz, Antonio M A Miranda, Anissa Viveiros, Nikolay Shvetsov, Anna Gaertner, Emily R Nadelmann, Michael Lee, Kazumasa Kanemaru, Jorge Ruiz-Orera, Viktoria Strohmenger, Daniel M DeLaughter, Giannino Patone, Hao Zhang, Andrew Woehler, Christoph Lippert, Yuri Kim, Eleonora Adami, Joshua M Gorham, Sam N Barnett, Kemar J Brown, Rachel J Buchan, Rasheda A Chowdhury, Chrystalla Constantinou, James Cranley, Leanne E Felkin, Henrik Fox, Ahla Ghauri, Jan F Gummert, Masatoshi Kanda, Ruoyan Li, Lukas Mach, Barbara McDonough, Sara Samari, Farnoush Shahriaran, Clarence Yapp, Caroline Stanasiuk, Pantazis I Theotokis, Fabian Joachim Theis, Antoon van den Bogaerdt, Hiroko Wakimoto, James Simon Ware, Catherine L Worth, Paul J R Barton, Young-Ae Lee, Sarah A Teichmann, Andreas Brodehl, Michela Noseda, Gavin Y Oudit, Matthias Heinig, Jonathan G Seidman, Norbert Hübner, Christine E Seidman
Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies. Science (New York, N.Y.) 377 (6606) (2022)
Clarence Yapp, Edward Novikov, Won-Dong Jang, Tuulia Vallius, Yu-An Chen, Marcelo Cicconet, Zoltan Maliga, Connor A Jacobson, Donglai Wei, Sandro Santagata, Hanspeter Pfister, Peter Karl Sorger
UnMICST: Deep learning with real augmentation for robust segmentation of highly multiplexed images of human tissues. Communications biology 5 (1) (2022)
Denis Schapiro, Artem Sokolov, Clarence Yapp, Yu-An Chen, Jeremy L Muhlich, Joshua Hess, Allison L Creason, Ajit J Nirmal, Gregory J Baker, Maulik K Nariya, Jia-Ren Lin, Zoltan Maliga, Connor A Jacobson, Matthew W Hodgman, Juha Ruokonen, Samouil L Farhi, Domenic Abbondanza, Eliot T McKinley, Daniel Persson, Courtney Betts, Shamilene Sivagnanam, Aviv Regev, Jeremy Goecks, D Borden Lacy, Lisa M Coussens, Sandro Santagata, Peter Karl Sorger
MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging. Nature methods (2021)
Zintis Inde, Ben A Croker, Clarence Yapp, Gaurav N Joshi, Johan K E Spetz, Cameron Fraser, Xingping Qin, Le Xu, Brian Deskin, Elisa Ghelfi, Gabrielle Webb, Aaron F Carlin, Yanfang Peipei Zhu, Sandra L Leibel, Aaron F Garretson, Alex E Clark, Jason M Duran, Victor G Pretorius, Laura E Crotty Alexander, Chendi Li, Jamie Casey Lee, Chhinder Sodhi, David J Hackam, Xin Sun, Aaron N Hata, Lester Kobzik, Jeffrey W Miller, Jin-Ah Park, Douglas G Brownfield, Hongpeng Jia, Kristopher A Sarosiek
Age-dependent regulation of SARS-CoV-2 cell entry genes and cell death programs correlates with COVID-19 severity. Science advances 7 (34) (2021)
Giorgio Gaglia, Rumana Rashid, Clarence Yapp, Gaurav N Joshi, Carmen G Li, Susan L Lindquist, Kristopher A Sarosiek, Luke Whitesell, Peter Karl Sorger, Sandro Santagata
HSF1 phase transition mediates stress adaptation and cell fate decisions. Nature cell biology 22 (2) (2020)
Anniina Farkkila, Doga C Gulhan, Julia Casado, Connor A Jacobson, Huy Nguyen, Bose Kochupurakkal, Zoltan Maliga, Clarence Yapp, Yu-An Chen, Denis Schapiro, Yinghui Zhou, Julie R Graham, Bruce J Dezube, Pamela N Munster, Sandro Santagata, Elizabeth Garcia, Scott Rodig, Ana Lako, Dipanjan Chowdhury, Geoffrey I Shapiro, Ursula A Matulonis, Peter J Park, Sampsa Hautaniemi, Peter Karl Sorger, Elizabeth M Swisher, Alan D' Andrea, Panagiotis A Konstantinopoulos
Author Correction: Immunogenomic profiling determines responses to combined PARP and PD-1 inhibition in ovarian cancer. Nature communications 11 (1) (2020)
Anniina Farkkila, Doga C Gulhan, Julia Casado, Connor A Jacobson, Huy Nguyen, Bose Kochupurakkal, Zoltan Maliga, Clarence Yapp, Yu-An Chen, Denis Schapiro, Yinghui Zhou, Julie R Graham, Bruce J Dezube, Pamela N Munster, Sandro Santagata, Elizabeth Garcia, Scott Rodig, Ana Lako, Dipanjan Chowdhury, Geoffrey I Shapiro, Ursula A Matulonis, Peter J Park, Sampsa Hautaniemi, Peter Karl Sorger, Elizabeth M Swisher, Alan D' Andrea, Panagiotis A Konstantinopoulos
Immunogenomic profiling determines responses to combined PARP and PD-1 inhibition in ovarian cancer. Nature communications 11 (1) (2020)
Rumana Rashid, Giorgio Gaglia, Yu-An Chen, Jia-Ren Lin, Zi-Ming Du, Zoltan Maliga, Denis Schapiro, Clarence Yapp, Jeremy L Muhlich, Artem Sokolov, Peter Sorger, Sandro Santagata
Highly multiplexed immunofluorescence images and single-cell data of immune markers in tonsil and lung cancer. Scientific data 6 (1) (2019)
Johannes C Melms, Sreeram Vallabhaneni, Caitlin E Mills, Clarence Yapp, Jia-Yun Chen, Eugenio Morelli, Patricia Waszyk, Sushil Kumar, Derrick Deming, Nienke Moret, Steven Rodriguez, Kartik Subramanian, Meri Rogava, Adam N R Cartwright, Adrienne Luoma, Shaolin Mei, Titus Josef Brinker, David M Miller, Alexander Spektor, Dirk Schadendorf, Nicolo Riggi, Kai W Wucherpfennig, Peter Karl Sorger, Benjamin Izar
Inhibition of Haspin Kinase Promotes Cell-Intrinsic and Extrinsic Antitumor Activity. Cancer research 80 (4) (2019)