Aaron R Quinlan (Aaron Quinlan)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 27

Top Venues

Genome research

bioRxiv : the preprint server for biology

Nature genetics

NPJ genomic medicine

College of William and Mary (BSC)

This page only lists publications with an associated author ORCID identifier.

Education History

College of William and Mary Aug 01 1993 - May 01 1997

United States

BSC :: Computer Science

Publications

John T Chamberlin, Younghee Lee, Gabor T Marth, Aaron R Quinlan
Differences in molecular sampling and data processing explain variation among single-cell and single-nucleus RNA-seq experiments. Genome research 34 (2) (2024)
John T Chamberlin, Austin E Gillen, Aaron R Quinlan
Improved characterization of single-cell RNA-seq libraries with paired-end avidity sequencing. bioRxiv : the preprint server for biology (2024)
John T Chamberlin, Younghee Lee, Gabor T Marth, Aaron R Quinlan
Differences in molecular sampling and data processing explain variation among single-cell and single-nucleus RNA-seq experiments. Genome research 34 (2) (2024)
John T Chamberlin, Younghee Lee, Gabor T Marth, Aaron R Quinlan
Differences in molecular sampling and data processing explain variation among single-cell and single-nucleus RNA-seq experiments. Genome research 34 (2) (2024)
John T Chamberlin, Austin E Gillen, Aaron R Quinlan
Improved characterization of single-cell RNA-seq libraries with paired-end avidity sequencing. bioRxiv : the preprint server for biology (2024)
John T Chamberlin, Younghee Lee, Gabor T Marth, Aaron R Quinlan
Differences in molecular sampling and data processing explain variation among single-cell and single-nucleus RNA-seq experiments. Genome research 34 (2) (2024)
John T Chamberlin, Younghee Lee, Gabor Marth, Aaron R Quinlan
Differences in molecular sampling and data processing explain variation among single-cell and single-nucleus RNA-seq experiments. Genome research (2024)
Laurel Hiatt, Ben Weisburd, Egor Dolzhenko, Grace E VanNoy, Nehir Edibe Kurtas, Michael J Bamshad, Aaron R Quinlan, Harriet Dashnow
STRchive: a dynamic resource detailing population-level and locus-specific insights at tandem repeat disease loci. medRxiv : the preprint server for health sciences (2024)
John T Chamberlin, Younghee Lee, Gabor T Marth, Aaron R Quinlan
Differences in molecular sampling and data processing explain variation among single-cell and single-nucleus RNA-seq experiments. Genome research 34 (2) (2024)
John T Chamberlin, Younghee Lee, Gabor T Marth, Aaron R Quinlan
Differences in molecular sampling and data processing explain variation among single-cell and single-nucleus RNA-seq experiments. Genome research 34 (2) (2024)
Thomas A Sasani, Aaron R Quinlan, Kelley Harris
Epistasis between mutator alleles contributes to germline mutation rate variability in laboratory mice. bioRxiv : the preprint server for biology (2023)
Thomas A Sasani, Aaron R Quinlan, Kelley Harris
Epistasis between mutator alleles contributes to germline mutation rate variability in laboratory mice. bioRxiv : the preprint server for biology (2023)
Thomas A Sasani, Aaron R Quinlan, Kelley Harris
Epistasis between mutator alleles contributes to germline mutation rate variability in laboratory mice. bioRxiv : the preprint server for biology (2023)
Thomas J Nicholas, Michael J Cormier, Xiaomeng Huang, Yi Qiao, Gabor T Marth, Aaron R Quinlan
OncoGEMINI: software for investigating tumor variants from multiple biopsies with integrated cancer annotations. Genome medicine 13 (1) (2021)
Michael J Cormier, Jonathan R Belyeu, Brent S Pedersen, Joseph Brown, Johannes Köster, Aaron R Quinlan
Go Get Data (GGD) is a framework that facilitates reproducible access to genomic data. Nature communications 12 (1) (2021)
Brent S Pedersen, Joseph M Brown, Harriet Dashnow, Amelia D Wallace, Matt Velinder, Martin Tristani-Firouzi, Joshua D Schiffman, Tatiana Tvrdik, Rong Mao, D Hunter Best, Pinar Bayrak-Toydemir, Aaron R Quinlan
Effective variant filtering and expected candidate variant yield in studies of rare human disease. NPJ genomic medicine 6 (1) (2021)
Amelia D Wallace, Thomas A Sasani, Jordan Swanier, Brooke L Gates, Jeff Greenland, Brent S Pedersen, Katherine E Varley, Aaron R Quinlan
CaBagE: A Cas9-based Background Elimination strategy for targeted, long-read DNA sequencing. PloS one 16 (4) (2021)
Hao Hou, Brent Pedersen, Aaron R Quinlan
Balancing efficient analysis and storage of quantitative genomics data with the D4 format and d4tools. Nature computational science 1 (6) (2021)
Joon-Yong An, Kevin Lin, Lingxue Zhu, Donna M Werling, Shan Dong, Harrison Brand, Harold Z Wang, Xuefang Zhao, Grace B Schwartz, Ryan L Collins, Benjamin B Currall, Claudia Dastmalchi, Jeanselle Dea, Clif Duhn, Michael C Gilson, Lambertus Klei, Lindsay Liang, Eirene Markenscoff-Papadimitriou, Sirisha Pochareddy, Nadav Ahituv, Joseph D Buxbaum, Hilary Coon, Mark J Daly, Young Shin Kim, Gabor T Marth, Benjamin M Neale, Aaron R Quinlan, John L Rubenstein, Nenad Sestan, Matthew W State, A Jeremy Willsey, Michael E Talkowski, Bernie Devlin, Kathryn Roeder, Stephan J Sanders
Genome-wide de novo risk score implicates promoter variation in autism spectrum disorder. Science (New York, N.Y.) 362 (6420) (2019)
Leandros Boukas, James M Havrilla, Peter F Hickey, Aaron R Quinlan, Hans Tomas Bjornsson, Kaspar D Hansen
Coexpression patterns define epigenetic regulators associated with neurological dysfunction. Genome research 29 (4) (2019)
Donna M Werling, Harrison Brand, Joon-Yong An, Matthew R Stone, Lingxue Zhu, Joseph T Glessner, Ryan L Collins, Shan Dong, Ryan M Layer, Eirene Markenscoff-Papadimitriou, Andrew Farrell, Grace B Schwartz, Harold Z Wang, Benjamin B Currall, Xuefang Zhao, Jeanselle Dea, Clif Duhn, Carolyn A Erdman, Michael C Gilson, Rachita Yadav, Robert E Handsaker, Seva Kashin, Lambertus Klei, Jeffrey D Mandell, Tomasz J Nowakowski, Yuwen Liu, Sirisha Pochareddy, Louw Smith, Michael F Walker, Matthew J Waterman, Xin He, Arnold R Kriegstein, John L Rubenstein, Nenad Sestan, Steven A McCarroll, Benjamin M Neale, Hilary Coon, A Jeremy Willsey, Joseph D Buxbaum, Mark J Daly, Matthew W State, Aaron R Quinlan, Gabor T Marth, Kathryn Roeder, Bernie Devlin, Michael E Talkowski, Stephan J Sanders
An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder. Nature genetics 50 (5) (2018)
Miten Jain, Sergey Koren, Karen H Miga, Josh Quick, Arthur C Rand, Thomas A Sasani, John R Tyson, Andrew D Beggs, Alexander T Dilthey, Ian T Fiddes, Sunir Malla, Hannah Marriott, Tom Nieto, Justin O'Grady, Hugh E Olsen, Brent S Pedersen, Arang Rhie, Hollian Richardson, Aaron R Quinlan, Terrance P Snutch, Louise Tee, Benedict Paten, Adam M Phillippy, Jared T Simpson, Nicholas J Loman, Matthew William Loose
Nanopore sequencing and assembly of a human genome with ultra-long reads. Nature biotechnology 36 (4) (2018)
Ryan M Layer, Brent S Pedersen, Tonya DiSera, Gabor T Marth, Jason Gertz, Aaron R Quinlan
GIGGLE: a search engine for large-scale integrated genome analysis. Nature methods 15 (2) (2018)
Betsy E P Ostrander, Russell J Butterfield, Brent S Pedersen, Andrew J Farrell, Ryan M Layer, Alistair Ward, Chase Miller, Tonya DiSera, Francis M Filloux, Meghan S Candee, Tara Newcomb, Joshua L Bonkowsky, Gabor T Marth, Aaron R Quinlan
Whole-genome analysis for effective clinical diagnosis and gene discovery in early infantile epileptic encephalopathy. NPJ genomic medicine 3 (2018)
James M Havrilla, Brent S Pedersen, Ryan M Layer, Aaron R Quinlan
A map of constrained coding regions in the human genome. Nature genetics 51 (1) (2018)
Thomas A Sasani, Kelsey R Cone, Aaron R Quinlan, Nels C Elde
Long read sequencing reveals poxvirus evolution through rapid homogenization of gene arrays. eLife 7 (2018)
Harm-Jan Westra, Marta Martínez-Bonet, Suna Onngut-Gumuscu, Annette Lee, Yang Luo, Nikola Teslovich, Jane Worthington, Javier Martin, Tom Huizinga, Lars Klareskog, Solbritt Rantapaa-Dahlqvist, Wei-Min Chen, Aaron R Quinlan, John A Todd, Steve Eyre, Peter A Nigrovic, Peter K Gregersen, Stephen S Rich, Soumya Raychaudhuri
Fine-mapping and functional studies highlight potential causal variants for rheumatoid arthritis and type 1 diabetes. Nature genetics 50 (10) (2018)

Aaron R Quinlan.css-eqlu8i{font-size:small;padding-left:4px;} (Aaron Quinlan)

Publication Activity (10 Years)

Top Topics

Top Venues

Aaron R Quinlan (Aaron Quinlan)