Nadav Ahituv

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 99

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Science (New York, N.Y.)

Nature genetics

University of California San Francisco

Tel-Aviv University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California San Francisco Jul 01 2016

United States

Professor :: Bioengineering and Therapeutic Sciences

University of California San Francisco Jul 01 2013 - Jul 01 2016

United States

Associate Professor :: Bioengineering and Therapeutic Sciences

University of California San Francisco Sep 01 2007 - Jul 01 2013

United States

Assistant Professor :: Bioengineering and Therapeutic Sciences

E O Lawrence Berkeley National Laboratory Sep 29 2002 - Aug 31 2007

United States

Postdoctoral fellow :: Genomics division

Education History

Tel-Aviv University Feb 01 1997 - Sep 20 2002

Israel

PHD :: Bioengineering and Therapeutic Sciences

Publications

Wei E Gordon, Seungbyn Baek, Hai P Nguyen, Yien-Ming Kuo, Rachael Bradley, Sarah L Fong, Nayeon Kim, Alexander V Galazyuk, Hoyoung Lee, Melissa R Ingala, Nancy B Simmons, Tony Schountz, Lisa Noelle Cooper, Ilias Georgakopoulos-Soares, Martin Hemberg, Nadav Ahituv
Author Correction: Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas. Nature communications 15 (1) (2024)
Hao Yu, Anas M Khanshour, Aki Ushiki, Nao Otomo, Yoshinao Koike, Elisabet Einarsdottir, Yanhui Fan, Lilian Antunes, Yared H Kidane, Reuel Cornelia, Rory R Sheng, Yichi Zhang, Jimin Pei, Nick V Grishin, Bret M Evers, Prudence Wing Hang Cheung, John A Herring, Chikashi C Terao, You-Qiang Song, Christina A Gurnett, Paul Gerdhem, Shiro Ikegawa, Jonathan J Rios, Nadav Ahituv, Carol A Wise
Association of genetic variation in COL11A1 with adolescent idiopathic scoliosis. eLife 12 (2024)
Biao Zeng, Jaroslav Bendl, Chengyu Deng, Donghoon Lee, Ruth Misir, Sarah M Reach, Steven P Kleopoulos, Pavan Auluck, Stefano Marenco, David A Lewis, Vahram Haroutunian, Nadav Ahituv, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Genetic regulation of cell type-specific chromatin accessibility shapes brain disease etiology. Science (New York, N.Y.) 384 (6698) (2024)
Hao Yu, Anas M Khanshour, Aki Ushiki, Nao Otomo, Yoshinao Koike, Elisabet Einarsdottir, Yanhui Fan, Lilian Antunes, Yared H Kidane, Reuel Cornelia, Rory R Sheng, Yichi Zhang, Jimin Pei, Nick V Grishin, Bret M Evers, Prudence Wing Hang Cheung, John A Herring, Chikashi C Terao, You-Qiang Song, Christina A Gurnett, Paul Gerdhem, Shiro Ikegawa, Jonathan J Rios, Nadav Ahituv, Carol A Wise
Association of genetic variation in COL11A1 with adolescent idiopathic scoliosis. eLife 12 (2024)
Florence M Chardon, Troy A McDiarmid, Nicholas F Page, Riza M Daza, Beth K Martin, Silvia Domcke, Samuel G Regalado, Jean-Benoît Lalanne, Diego Calderon, Xiaoyi Li, Joshua T Schiffer, Stephan J Sanders, Nadav Ahituv, Jay Shendure
Multiplex, single-cell CRISPRa screening for cell type specific regulatory elements. Nature communications 15 (1) (2024)
Jiayi Liu, Tal Ashuach, Fumitaka Inoue, Nadav Ahituv, Nir Yosef, Anat Kreimer
Optimizing sequence design strategies for perturbation MPRAs: a computational evaluation framework. Nucleic acids research 52 (4) (2024)
Yuanqing Feng, Ning Xie, Fumitaka Inoue, Shaohua Fan, Joshua Saskin, Chao Zhang, Fang Zhang, Matthew E B Hansen, Thomas Nyambo, Sununguko Wata Mpoloka, Gaonyadiwe George Mokone, Charles Fokunang, Gurja Belay, Alfred Kongnyu Njamnshi, Michael S Marks, Elena Oancea, Nadav Ahituv, Sarah A Tishkoff
Integrative functional genomic analyses identify genetic variants influencing skin pigmentation in Africans. Nature genetics 56 (2) (2024)
Yuanqing Feng, Ning Xie, Fumitaka Inoue, Shaohua Fan, Joshua Saskin, Chao Zhang, Fang Zhang, Matthew E B Hansen, Thomas Nyambo, Sununguko Wata Mpoloka, Gaonyadiwe George Mokone, Charles Fokunang, Gurja Belay, Alfred Kongnyu Njamnshi, Michael S Marks, Elena Oancea, Nadav Ahituv, Sarah A Tishkoff
Integrative functional genomic analyses identify genetic variants influencing skin pigmentation in Africans. Nature genetics 56 (2) (2024)
Jiayi Liu, Tal Ashuach, Fumitaka Inoue, Nadav Ahituv, Nir Yosef, Anat Kreimer
Optimizing sequence design strategies for perturbation MPRAs: a computational evaluation framework. Nucleic acids research (2024)
Hao Yu, Anas M Khanshour, Aki Ushiki, Nao Otomo, Yoshinao Koike, Elisabet Einarsdottir, Yanhui Fan, Lilian Antunes, Yared H Kidane, Reuel Cornelia, Rory R Sheng, Yichi Zhang, Jimin Pei, Nick V Grishin, Bret M Evers, Prudence Wing Hang Cheung, John A Herring, Chikashi C Terao, You-Qiang Song, Christina A Gurnett, Paul Gerdhem, Shiro Ikegawa, Jonathan J Rios, Nadav Ahituv, Carol A Wise
Association of genetic variation in COL11A1 with adolescent idiopathic scoliosis. eLife 12 (2024)
Wei E Gordon, Seungbyn Baek, Hai P Nguyen, Yien-Ming Kuo, Rachael Bradley, Sarah L Fong, Nayeon Kim, Alexander V Galazyuk, Hoyoung Lee, Melissa R Ingala, Nancy B Simmons, Tony Schountz, Lisa Noelle Cooper, Ilias Georgakopoulos-Soares, Martin Hemberg, Nadav Ahituv
Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas. Nature communications 15 (1) (2024)
Yuanqing Feng, Ning Xie, Fumitaka Inoue, Shaohua Fan, Joshua Saskin, Chao Zhang, Fang Zhang, Matthew E B Hansen, Thomas Nyambo, Sununguko Wata Mpoloka, Gaonyadiwe George Mokone, Charles Fokunang, Gurja Belay, Alfred Kongnyu Njamnshi, Michael S Marks, Elena Oancea, Nadav Ahituv, Sarah A Tishkoff
Integrative functional genomic analyses identify genetic variants influencing skin pigmentation in Africans. Nature genetics (2024)
Hao Yu, Anas M Khanshour, Aki Ushiki, Nao Otomo, Yoshinao Koike, Elisabet Einarsdottir, Yanhui Fan, Lilian Antunes, Yared H Kidane, Reuel Cornelia, Rory R Sheng, Yichi Zhang, Jimin Pei, Nick V Grishin, Bret M Evers, Prudence Wing Hang Cheung, John A Herring, Chikashi C Terao, You-Qiang Song, Christina A Gurnett, Paul Gerdhem, Shiro Ikegawa, Jonathan J Rios, Nadav Ahituv, Carol A Wise
Association of genetic variation in COL11A1 with adolescent idiopathic scoliosis. eLife 12 (2024)
Yuanqing Feng, Ning Xie, Fumitaka Inoue, Shaohua Fan, Joshua Saskin, Chao Zhang, Fang Zhang, Matthew E B Hansen, Thomas Nyambo, Sununguko Wata Mpoloka, Gaonyadiwe George Mokone, Charles Fokunang, Gurja Belay, Alfred Kongnyu Njamnshi, Michael S Marks, Elena Oancea, Nadav Ahituv, Sarah A Tishkoff
Integrative functional genomic analyses identify genetic variants influencing skin pigmentation in Africans. Nature genetics 56 (2) (2024)
Jiayi Liu, Tal Ashuach, Fumitaka Inoue, Nadav Ahituv, Nir Yosef, Anat Kreimer
Optimizing sequence design strategies for perturbation MPRAs: a computational evaluation framework. Nucleic acids research (2024)
Jiayi Liu, Tal Ashuach, Fumitaka Inoue, Nadav Ahituv, Nir Yosef, Anat Kreimer
Optimizing sequence design strategies for perturbation MPRAs: a computational evaluation framework. Nucleic acids research 52 (4) (2024)
Wei E Gordon, Seungbyn Baek, Hai P Nguyen, Yien-Ming Kuo, Rachael Bradley, Sarah L Fong, Nayeon Kim, Alexander V Galazyuk, Hoyoung Lee, Melissa R Ingala, Nancy B Simmons, Tony Schountz, Lisa Noelle Cooper, Ilias Georgakopoulos-Soares, Martin Hemberg, Nadav Ahituv
Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas. Nature communications 15 (1) (2024)
Wei E Gordon, Seungbyn Baek, Hai P Nguyen, Yien-Ming Kuo, Rachael Bradley, Sarah L Fong, Nayeon Kim, Alexander V Galazyuk, Hoyoung Lee, Melissa R Ingala, Nancy B Simmons, Tony Schountz, Lisa Noelle Cooper, Ilias Georgakopoulos-Soares, Martin Hemberg, Nadav Ahituv
Author Correction: Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas. Nature communications 15 (1) (2024)
Yuanqing Feng, Ning Xie, Fumitaka Inoue, Shaohua Fan, Joshua Saskin, Chao Zhang, Fang Zhang, Matthew E B Hansen, Thomas Nyambo, Sununguko Wata Mpoloka, Gaonyadiwe George Mokone, Charles Fokunang, Gurja Belay, Alfred Kongnyu Njamnshi, Michael S Marks, Elena Oancea, Nadav Ahituv, Sarah A Tishkoff
Integrative functional genomic analyses identify genetic variants influencing skin pigmentation in Africans. Nature genetics 56 (2) (2024)
Wei E Gordon, Seungbyn Baek, Hai P Nguyen, Yien-Ming Kuo, Rachael Bradley, Sarah L Fong, Nayeon Kim, Alexander V Galazyuk, Hoyoung Lee, Melissa R Ingala, Nancy B Simmons, Tony Schountz, Lisa Noelle Cooper, Ilias Georgakopoulos-Soares, Martin Hemberg, Nadav Ahituv
Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas. Nature communications 15 (1) (2024)
Biao Zeng, Jaroslav Bendl, Chengyu Deng, Donghoon Lee, Ruth Misir, Sarah M Reach, Steven P Kleopoulos, Pavan Auluck, Stefano Marenco, David A Lewis, Vahram Haroutunian, Nadav Ahituv, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Genetic regulation of cell type-specific chromatin accessibility shapes brain disease etiology. Science (New York, N.Y.) 384 (6698) (2024)
Jiayi Liu, Tal Ashuach, Fumitaka Inoue, Nadav Ahituv, Nir Yosef, Anat Kreimer
Optimizing sequence design strategies for perturbation MPRAs: a computational evaluation framework. Nucleic acids research 52 (4) (2024)
Yuanqing Feng, Ning Xie, Fumitaka Inoue, Shaohua Fan, Joshua Saskin, Chao Zhang, Fang Zhang, Matthew E B Hansen, Thomas Nyambo, Sununguko Wata Mpoloka, Gaonyadiwe George Mokone, Charles Fokunang, Gurja Belay, Alfred Kongnyu Njamnshi, Michael S Marks, Elena Oancea, Nadav Ahituv, Sarah A Tishkoff
Integrative functional genomic analyses identify genetic variants influencing skin pigmentation in Africans. Nature genetics 56 (2) (2024)
Michael Kosicki, Dianne Laboy Cintrón, Nicholas F Page, Ilias Georgakopoulos-Soares, Jennifer A Akiyama, Ingrid Plajzer-Frick, Catherine S Novak, Momoe Kato, Riana D Hunter, Kianna von Maydell, Sarah Barton, Patrick Godfrey, Erik Beckman, Stephan J Sanders, Len A Pennacchio, Nadav Ahituv
Massively parallel reporter assays and mouse transgenic assays provide complementary information about neuronal enhancer activity. bioRxiv : the preprint server for biology (2024)
Yuanqing Feng, Ning Xie, Fumitaka Inoue, Shaohua Fan, Joshua Saskin, Chao Zhang, Fang Zhang, Matthew E B Hansen, Thomas Nyambo, Sununguko Wata Mpoloka, Gaonyadiwe George Mokone, Charles Fokunang, Gurja Belay, Alfred Kongnyu Njamnshi, Michael S Marks, Elena Oancea, Nadav Ahituv, Sarah A Tishkoff
Integrative functional genomic analyses identify genetic variants influencing skin pigmentation in Africans. Nature genetics 56 (2) (2024)
Biao Zeng, Jaroslav Bendl, Chengyu Deng, Donghoon Lee, Ruth Misir, Sarah M Reach, Steven P Kleopoulos, Pavan Auluck, Stefano Marenco, David A Lewis, Vahram Haroutunian, Nadav Ahituv, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Genetic regulation of cell type-specific chromatin accessibility shapes brain disease etiology. Science (New York, N.Y.) 384 (6698) (2024)
Michael Kosicki, Dianne Laboy Cintrón, Nicholas F Page, Ilias Georgakopoulos-Soares, Jennifer A Akiyama, Ingrid Plajzer-Frick, Catherine S Novak, Momoe Kato, Riana D Hunter, Kianna von Maydell, Sarah Barton, Patrick Godfrey, Erik Beckman, Stephan J Sanders, Len A Pennacchio, Nadav Ahituv
Massively parallel reporter assays and mouse transgenic assays provide complementary information about neuronal enhancer activity. bioRxiv : the preprint server for biology (2024)
Wei E Gordon, Seungbyn Baek, Hai P Nguyen, Yien-Ming Kuo, Rachael Bradley, Sarah L Fong, Nayeon Kim, Alexander V Galazyuk, Hoyoung Lee, Melissa R Ingala, Nancy B Simmons, Tony Schountz, Lisa Noelle Cooper, Ilias Georgakopoulos-Soares, Martin Hemberg, Nadav Ahituv
Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas. Nature communications 15 (1) (2024)
Navneet Matharu, Jingjing Zhao, Ajuni Sohota, Linbei Deng, Yan Hung, Zizheng Li, Jasmine Sims, Sawitree Rattanasopha, Josh Meyer, Lucia Carbone, Martin Kircher, Nadav Ahituv
Massively parallel jumping assay decodes Alu retrotransposition activity. bioRxiv : the preprint server for biology (2024)
Wei E Gordon, Seungbyn Baek, Hai P Nguyen, Yien-Ming Kuo, Rachael Bradley, Sarah L Fong, Nayeon Kim, Alexander V Galazyuk, Hoyoung Lee, Melissa R Ingala, Nancy B Simmons, Tony Schountz, Lisa Noelle Cooper, Ilias Georgakopoulos-Soares, Martin Hemberg, Nadav Ahituv
Author Correction: Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas. Nature communications 15 (1) (2024)
Wei E Gordon, Seungbyn Baek, Hai P Nguyen, Yien-Ming Kuo, Rachael Bradley, Sarah L Fong, Nayeon Kim, Alexander V Galazyuk, Hoyoung Lee, Melissa R Ingala, Nancy B Simmons, Tony Schountz, Lisa Noelle Cooper, Ilias Georgakopoulos-Soares, Martin Hemberg, Nadav Ahituv
Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas. Nature communications 15 (1) (2024)
Wei E Gordon, Seungbyn Baek, Hai P Nguyen, Yien-Ming Kuo, Rachael Bradley, Sarah L Fong, Nayeon Kim, Alexander V Galazyuk, Hoyoung Lee, Melissa R Ingala, Nancy B Simmons, Tony Schountz, Lisa Noelle Cooper, Ilias Georgakopoulos-Soares, Martin Hemberg, Nadav Ahituv
Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas. Nature communications 15 (1) (2024)
Michael Kosicki, Dianne Laboy Cintrón, Nicholas F Page, Ilias Georgakopoulos-Soares, Jennifer A Akiyama, Ingrid Plajzer-Frick, Catherine S Novak, Momoe Kato, Riana D Hunter, Kianna von Maydell, Sarah Barton, Patrick Godfrey, Erik Beckman, Stephan J Sanders, Len A Pennacchio, Nadav Ahituv
Massively parallel reporter assays and mouse transgenic assays provide complementary information about neuronal enhancer activity. bioRxiv : the preprint server for biology (2024)
Wei E Gordon, Seungbyn Baek, Hai P Nguyen, Yien-Ming Kuo, Rachael Bradley, Sarah L Fong, Nayeon Kim, Alexander V Galazyuk, Hoyoung Lee, Melissa R Ingala, Nancy B Simmons, Tony Schountz, Lisa Noelle Cooper, Ilias Georgakopoulos-Soares, Martin Hemberg, Nadav Ahituv
Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas. Nature communications 15 (1) (2024)
Hao Yu, Anas M Khanshour, Aki Ushiki, Nao Otomo, Yoshinao Koike, Elisabet Einarsdottir, Yanhui Fan, Lilian Antunes, Yared H Kidane, Reuel Cornelia, Rory R Sheng, Yichi Zhang, Jimin Pei, Nick V Grishin, Bret M Evers, Prudence Wing Hang Cheung, John A Herring, Chikashi C Terao, You-Qiang Song, Christina A Gurnett, Paul Gerdhem, Shiro Ikegawa, Jonathan J Rios, Nadav Ahituv, Carol A Wise
Association of genetic variation in COL11A1 with adolescent idiopathic scoliosis. eLife 12 (2024)
Wei E Gordon, Seungbyn Baek, Hai P Nguyen, Yien-Ming Kuo, Rachael Bradley, Sarah L Fong, Nayeon Kim, Alexander V Galazyuk, Hoyoung Lee, Melissa R Ingala, Nancy B Simmons, Tony Schountz, Lisa Noelle Cooper, Ilias Georgakopoulos-Soares, Martin Hemberg, Nadav Ahituv
Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas. Nature communications 15 (1) (2024)
Fumitaka Inoue, Walter L Eckalbar, Yi Wang, Karl K Murphy, Navneet Matharu, Christian Vaisse, Nadav Ahituv
Author Correction: Genomic and epigenomic mapping of leptin-responsive neuronal populations involved in body weight regulation. Nature metabolism (2024)
Yuanqing Feng, Ning Xie, Fumitaka Inoue, Shaohua Fan, Joshua Saskin, Chao Zhang, Fang Zhang, Matthew E B Hansen, Thomas Nyambo, Sununguko Wata Mpoloka, Gaonyadiwe George Mokone, Charles Fokunang, Gurja Belay, Alfred Kongnyu Njamnshi, Michael S Marks, Elena Oancea, Nadav Ahituv, Sarah A Tishkoff
Integrative functional genomic analyses identify genetic variants influencing skin pigmentation in Africans. Nature genetics (2024)
Yuanqing Feng, Ning Xie, Fumitaka Inoue, Shaohua Fan, Joshua Saskin, Chao Zhang, Fang Zhang, Matthew E B Hansen, Thomas Nyambo, Sununguko Wata Mpoloka, Gaonyadiwe George Mokone, Charles Fokunang, Gurja Belay, Alfred Kongnyu Njamnshi, Michael S Marks, Elena Oancea, Nadav Ahituv, Sarah A Tishkoff
Integrative functional genomic analyses identify genetic variants influencing skin pigmentation in Africans. Nature genetics 56 (2) (2024)
Yuanqing Feng, Ning Xie, Fumitaka Inoue, Shaohua Fan, Joshua Saskin, Chao Zhang, Fang Zhang, Matthew E B Hansen, Thomas Nyambo, Sununguko Wata Mpoloka, Gaonyadiwe George Mokone, Charles Fokunang, Gurja Belay, Alfred Kongnyu Njamnshi, Michael S Marks, Elena Oancea, Nadav Ahituv, Sarah A Tishkoff
Integrative functional genomic analyses identify genetic variants influencing skin pigmentation in Africans. Nature genetics 56 (2) (2024)
Navneet Matharu, Jingjing Zhao, Ajuni Sohota, Linbei Deng, Yan Hung, Zizheng Li, Jasmine Sims, Sawitree Rattanasopha, Josh Meyer, Lucia Carbone, Martin Kircher, Nadav Ahituv
Massively parallel jumping assay decodes Alu retrotransposition activity. bioRxiv : the preprint server for biology (2024)
Wei E Gordon, Seungbyn Baek, Hai P Nguyen, Yien-Ming Kuo, Rachael Bradley, Sarah L Fong, Nayeon Kim, Alexander V Galazyuk, Hoyoung Lee, Melissa R Ingala, Nancy B Simmons, Tony Schountz, Lisa Noelle Cooper, Ilias Georgakopoulos-Soares, Martin Hemberg, Nadav Ahituv
Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas. Nature communications 15 (1) (2024)
Jiayi Liu, Tal Ashuach, Fumitaka Inoue, Nadav Ahituv, Nir Yosef, Anat Kreimer
Optimizing sequence design strategies for perturbation MPRAs: a computational evaluation framework. Nucleic acids research 52 (4) (2024)
Wei E Gordon, Seungbyn Baek, Hai P Nguyen, Yien-Ming Kuo, Rachael Bradley, Sarah L Fong, Nayeon Kim, Alexander V Galazyuk, Hoyoung Lee, Melissa R Ingala, Nancy B Simmons, Tony Schountz, Lisa Noelle Cooper, Ilias Georgakopoulos-Soares, Martin Hemberg, Nadav Ahituv
Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas. Nature communications 15 (1) (2024)
Kathleen C Keough, Sean Whalen, Fumitaka Inoue, Pawel F Przytycki, Tyler Fair, Chengyu Deng, Marilyn Steyert, Hane Ryu, Kerstin Lindblad-Toh, Elinor K Karlsson, null null, Tomasz Jan Nowakowski, Nadav Ahituv, Alex Aaron Pollen, Katherine S Pollard
Three-dimensional genome rewiring in loci with human accelerated regions. Science (New York, N.Y.) 380 (6643) (2023)
Biao Zeng, Jaroslav Bendl, Chengyu Deng, Donghoon Lee, Ruth Misir, Sarah M Reach, Steven P Kleopoulos, Pavan Auluck, Stefano Marenco, David A Lewis, Vahram Haroutunian, Nadav Ahituv, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Genetic regulation of cell-type specific chromatin accessibility shapes the etiology of brain diseases. bioRxiv : the preprint server for biology (2023)
Mariam Okhovat, Jake VanCampen, Kimberly A Nevonen, Lana Harshman, Weiyu Li, Cora E Layman, Samantha Ward, Jarod Herrera, Jackson Wells, Rory R Sheng, Yafei Mao, Blaise Ndjamen, Ana C Lima, Katinka A Vigh-Conrad, Alexandra M Stendahl, Ran Yang, Lev Fedorov, Ian R Matthews, Sarah A Easow, Dylan K Chan, Taha A Jan, Evan E Eichler, Sandra Rugonyi, Donald F Conrad, Nadav Ahituv, Lucia Carbone
TAD evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function. Nature communications 14 (1) (2023)
Coline Arnould, Vincent Rocher, Florian Saur, Martin Bushell, Fernando Muzzopappa, Sarah Collins, Emma Lesage, Benjamin Le Bozec, Nadine Puget, Thomas Clouaire, Thomas Mangeat, Raphael Mourad, Nadav Ahituv, Daan Noordermeer, Fabian Erdel, Martin Bushell, Aline Marnef, Gaëlle Legube
Author Correction: Chromatin compartmentalization regulates the response to DNA damage. Nature (2023)
Ilias Georgakopoulos-Soares, Chengyu Deng, Vikram Agarwal, Candace S Y Chan, Jingjing Zhao, Fumitaka Inoue, Nadav Ahituv
Transcription factor binding site orientation and order are major drivers of gene regulatory activity. Nature communications 14 (1) (2023)
Kathleen C Keough, Sean Whalen, Fumitaka Inoue, Pawel F Przytycki, Tyler Fair, Chengyu Deng, Marilyn Steyert, Hane Ryu, Kerstin Lindblad-Toh, Elinor K Karlsson, null null, Tomasz Jan Nowakowski, Nadav Ahituv, Alex Aaron Pollen, Katherine S Pollard, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Three-dimensional genome rewiring in loci with human accelerated regions. Science (New York, N.Y.) 380 (6643) (2023)
Aki Ushiki, Rory R Sheng, Yichi Zhang, Jingjing Zhao, Mai Nobuhara, Elizabeth Murray, Xin Ruan, Jonathan J Rios, Carol A Wise, Nadav Ahituv
Deletion of Pax1 scoliosis-associated regulatory elements leads to a female-biased tail abnormality. bioRxiv : the preprint server for biology (2023)
Ioannis Mouratidis, Candace S Y Chan, Nikol Chantzi, Georgios Christos Tsiatsianis, Martin Hemberg, Nadav Ahituv, Ilias Georgakopoulos-Soares
Quasi-prime peptides: identification of the shortest peptide sequences unique to a species. NAR genomics and bioinformatics 5 (2) (2023)
Vikram Agarwal, Fumitaka Inoue, Max Schubach, Beth K Martin, Pyaree Mohan Dash, Zicong Zhang, Ajuni Sohota, William Stafford Noble, Galip Gürkan Yardimci, Martin Kircher, Jay Shendure, Nadav Ahituv
Massively parallel characterization of transcriptional regulatory elements in three diverse human cell types. bioRxiv : the preprint server for biology (2023)
Ilias Georgakopoulos-Soares, Chengyu Deng, Vikram Agarwal, Candace S Y Chan, Jingjing Zhao, Fumitaka Inoue, Nadav Ahituv
Transcription factor binding site orientation and order are major drivers of gene regulatory activity. Nature communications 14 (1) (2023)
Ilias Georgakopoulos-Soares, Chengyu Deng, Vikram Agarwal, Candace S Y Chan, Jingjing Zhao, Fumitaka Inoue, Nadav Ahituv
Transcription factor binding site orientation and order are major drivers of gene regulatory activity. Nature communications 14 (1) (2023)
Kathleen C Keough, Sean Whalen, Fumitaka Inoue, Pawel F Przytycki, Tyler Fair, Chengyu Deng, Marilyn Steyert, Hane Ryu, Kerstin Lindblad-Toh, Elinor K Karlsson, null null, Tomasz Jan Nowakowski, Nadav Ahituv, Alex Aaron Pollen, Katherine S Pollard, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Three-dimensional genome rewiring in loci with human accelerated regions. Science (New York, N.Y.) 380 (6643) (2023)
Justin Koesterich, Joon-Yong An, Fumitaka Inoue, Ajuni Sohota, Nadav Ahituv, Stephan J Sanders, Anat Kreimer
Characterization of De Novo Promoter Variants in Autism Spectrum Disorder with Massively Parallel Reporter Assays. International journal of molecular sciences 24 (4) (2023)
Ilias Georgakopoulos-Soares, Chengyu Deng, Vikram Agarwal, Candace S Y Chan, Jingjing Zhao, Fumitaka Inoue, Nadav Ahituv
Transcription factor binding site orientation and order are major drivers of gene regulatory activity. Nature communications 14 (1) (2023)
Biao Zeng, Jaroslav Bendl, Chengyu Deng, Donghoon Lee, Ruth Misir, Sarah M Reach, Steven P Kleopoulos, Pavan Auluck, Stefano Marenco, David A Lewis, Vahram Haroutunian, Nadav Ahituv, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Genetic regulation of cell-type specific chromatin accessibility shapes the etiology of brain diseases. bioRxiv : the preprint server for biology (2023)
Kathleen C Keough, Sean Whalen, Fumitaka Inoue, Pawel F Przytycki, Tyler Fair, Chengyu Deng, Marilyn Steyert, Hane Ryu, Kerstin Lindblad-Toh, Elinor K Karlsson, null null, Tomasz Jan Nowakowski, Nadav Ahituv, Alex Aaron Pollen, Katherine S Pollard, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Three-dimensional genome rewiring in loci with human accelerated regions. Science (New York, N.Y.) 380 (6643) (2023)
Ioannis Mouratidis, Candace S Y Chan, Nikol Chantzi, Georgios Christos Tsiatsianis, Martin Hemberg, Nadav Ahituv, Ilias Georgakopoulos-Soares
Quasi-prime peptides: identification of the shortest peptide sequences unique to a species. NAR genomics and bioinformatics 5 (2) (2023)
Davide Capauto, Yifan Wang, Feinan Wu, Scott Norton, Jessica Mariani, Fumitaka Inoue, Gregory E Crawford, null null, Nadav Ahituv, Alexej Abyzov, Flora M Vaccarino
Characterization of enhancer activity in early human neurodevelopment using Massively parallel reporter assay (MPRA) and forebrain organoids. bioRxiv : the preprint server for biology (2023)
Aki Ushiki, Rory R Sheng, Yichi Zhang, Jingjing Zhao, Mai Nobuhara, Elizabeth Murray, Xin Ruan, Jonathan J Rios, Carol A Wise, Nadav Ahituv
Deletion of Pax1 scoliosis-associated regulatory elements leads to a female-biased tail abnormality. bioRxiv : the preprint server for biology (2023)
Aki Ushiki, Rory R Sheng, Yichi Zhang, Jingjing Zhao, Mai Nobuhara, Elizabeth Murray, Xin Ruan, Jonathan J Rios, Carol A Wise, Nadav Ahituv
Deletion of Pax1 scoliosis-associated regulatory elements leads to a female-biased tail abnormality. bioRxiv : the preprint server for biology (2023)
Biao Zeng, Jaroslav Bendl, Chengyu Deng, Donghoon Lee, Ruth Misir, Sarah M Reach, Steven P Kleopoulos, Pavan Auluck, Stefano Marenco, David A Lewis, Vahram Haroutunian, Nadav Ahituv, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Genetic regulation of cell-type specific chromatin accessibility shapes the etiology of brain diseases. bioRxiv : the preprint server for biology (2023)
Justin Koesterich, Joon-Yong An, Fumitaka Inoue, Ajuni Sohota, Nadav Ahituv, Stephan J Sanders, Anat Kreimer
Characterization of De Novo Promoter Variants in Autism Spectrum Disorder with Massively Parallel Reporter Assays. International journal of molecular sciences 24 (4) (2023)
Kathleen C Keough, Sean Whalen, Fumitaka Inoue, Pawel F Przytycki, Tyler Fair, Chengyu Deng, Marilyn Steyert, Hane Ryu, Kerstin Lindblad-Toh, Elinor K Karlsson, null null, Tomasz Jan Nowakowski, Nadav Ahituv, Alex Aaron Pollen, Katherine S Pollard, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Three-dimensional genome rewiring in loci with human accelerated regions. Science (New York, N.Y.) 380 (6643) (2023)
Justin Koesterich, Joon-Yong An, Fumitaka Inoue, Ajuni Sohota, Nadav Ahituv, Stephan J Sanders, Anat Kreimer
Characterization of De Novo Promoter Variants in Autism Spectrum Disorder with Massively Parallel Reporter Assays. International journal of molecular sciences 24 (4) (2023)
Florence M Chardon, Troy A McDiarmid, Nicholas F Page, Beth Martin, Silvia Domcke, Samuel G Regalado, Jean-Beno Æt Lalanne, Diego Calderon, Joshua T Schiffer, Stephan J Sanders, Nadav Ahituv, Jay Shendure
Multiplex, single-cell CRISPRa screening for cell type specific regulatory elements. bioRxiv : the preprint server for biology (2023)
Kathleen C Keough, Sean Whalen, Fumitaka Inoue, Pawel F Przytycki, Tyler Fair, Chengyu Deng, Marilyn Steyert, Hane Ryu, Kerstin Lindblad-Toh, Elinor K Karlsson, null null, Tomasz Jan Nowakowski, Nadav Ahituv, Alex Aaron Pollen, Katherine S Pollard, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Bruce W Birren, Kevin R Bredemeyer, Ana M Breit, Matthew J Christmas, Hiram Clawson, Joana Damas, Federica Di Palma, Mark Diekhans, Michael X Dong, Eduardo Eizirik, Kaili Fan, Cornelia Fanter, Nicole M Foley, Karin Forsberg-Nilsson, Carlos J Garcia, John Gatesy, Steven Gazal, Diane P Genereux, Linda Goodman, Jenna Grimshaw, Michaela K Halsey, Andrew J Harris, Glenn Hickey, Michael Hiller, Allyson G Hindle, Robert M Hubley, Graham M Hughes, Jeremy Johnson, David Juan, Irene M Kaplow, Elinor K Karlsson, Kathleen C Keough, Bogdan Kirilenko, Klaus-Peter Koepfli, Jennifer M Korstian, Amanda Kowalczyk, Sergey V Kozyrev, Alyssa J Lawler, Colleen Lawless, Thomas Lehmann, Danielle L Levesque, Harris A Lewin, Xue Li, Abigail Lind, Kerstin Lindblad-Toh, Ava Mackay-Smith, Voichita D Marinescu, Tomas Marques-Bonet, Victor C Mason, Jennifer R S Meadows, Wynn K Meyer, Jill E Moore, Lucas R Moreira, Diana D Moreno-Santillan, Kathleen M Morrill, Gerard Muntané, William J Murphy, Arcadi Navarro, Martin Nweeia, Sylvia Ortmann, Austin Osmanski, Benedict Paten, Nicole S Paulat, Andreas R Pfenning, BaDoi N Phan, Katherine S Pollard, Henry E Pratt, David A Ray, Steven K Reilly, Jeb R Rosen, Irina Ruf, Louise Ryan, Oliver A Ryder, Pardis C Sabeti, Daniel E Schäffer, Aitor Serres, Beth Shapiro, Arian F A Smit, Mark Springer, Chaitanya Srinivasan, Cynthia Steiner, Jessica M Storer, Kevin A M Sullivan, Patrick F Sullivan, Elisabeth Sundström, Megan A Supple, Ross Swofford, Joy-El Talbot, Emma Teeling, Jason Turner-Maier, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Chao Wang, Juehan Wang, Zhiping Weng, Aryn P Wilder, Morgan E Wirthlin, James R Xue, Xiaomeng Zhang
Three-dimensional genome rewiring in loci with human accelerated regions. Science (New York, N.Y.) 380 (6643) (2023)
Ilias Georgakopoulos-Soares, Chengyu Deng, Vikram Agarwal, Candace S Y Chan, Jingjing Zhao, Fumitaka Inoue, Nadav Ahituv
Transcription factor binding site orientation and order are major drivers of gene regulatory activity. Nature communications 14 (1) (2023)
Biao Zeng, Jaroslav Bendl, Chengyu Deng, Donghoon Lee, Ruth Misir, Sarah M Reach, Steven P Kleopoulos, Pavan Auluck, Stefano Marenco, David A Lewis, Vahram Haroutunian, Nadav Ahituv, John F Fullard, Gabriel E Hoffman, Panagiotis Roussos
Genetic regulation of cell-type specific chromatin accessibility shapes the etiology of brain diseases. bioRxiv : the preprint server for biology (2023)
Ilias Georgakopoulos-Soares, Chengyu Deng, Vikram Agarwal, Candace S Y Chan, Jingjing Zhao, Fumitaka Inoue, Nadav Ahituv
Transcription factor binding site orientation and order are major drivers of gene regulatory activity. Nature communications 14 (1) (2023)
Coline Arnould, Vincent Rocher, Florian Saur, Martin Bushell, Fernando Muzzopappa, Sarah Collins, Emma Lesage, Benjamin Le Bozec, Nadine Puget, Thomas Clouaire, Thomas Mangeat, Raphael Mourad, Nadav Ahituv, Daan Noordermeer, Fabian Erdel, Martin Bushell, Aline Marnef, Gaëlle Legube
Chromatin compartmentalization regulates the response to DNA damage. Nature (2023)
Kathleen C Keough, Sean Whalen, Fumitaka Inoue, Pawel F Przytycki, Tyler Fair, Chengyu Deng, Marilyn Steyert, Hane Ryu, Kerstin Lindblad-Toh, Elinor K Karlsson, null null, Tomasz Jan Nowakowski, Nadav Ahituv, Alex Aaron Pollen, Katherine S Pollard
Three-dimensional genome rewiring in loci with human accelerated regions. Science (New York, N.Y.) 380 (6643) (2023)
Aki Ushiki, Rory R Sheng, Yichi Zhang, Jingjing Zhao, Mai Nobuhara, Elizabeth Murray, Xin Ruan, Jonathan J Rios, Carol A Wise, Nadav Ahituv
Deletion of Pax1 scoliosis-associated regulatory elements leads to a female-biased tail abnormality. bioRxiv : the preprint server for biology (2023)
Sarah K Nyquist, Patricia Gao, Tessa K J Haining, Michael R Retchin, Yarden Golan, Riley S Drake, Kellie Kolb, Benjamin E Mead, Nadav Ahituv, Micaela E Martinez, Alex K Shalek, Bonnie Berger, Brittany A Goods
Cellular and transcriptional diversity over the course of human lactation. Proceedings of the National Academy of Sciences of the United States of America 119 (15) (2022)
Anat Kreimer, Tal Ashuach, Fumitaka Inoue, Alex Khodaverdian, Chengyu Deng, Nir Yosef, Nadav Ahituv
Massively parallel reporter perturbation assays uncover temporal regulatory architecture during neural differentiation. Nature communications 13 (1) (2022)
David Gokhman, Rachel M Agoglia, Maia Kinnebrew, Wei E Gordon, Danqiong Sun, Vivek K Bajpai, Sahin Naqvi, Coral Chen, Anthony W S Chan, Chider Chen, Dmitri A Petrov, Nadav Ahituv, Honghao Zhang, Yuji Mishina, Joanna Wysocka, Rajat Rohatgi, Hunter B Fraser
Human-chimpanzee fused cells reveal cis-regulatory divergence underlying skeletal evolution. Nature genetics 53 (4) (2021)
Ilias Georgakopoulos-Soares, Ofer Yizhar-Barnea, Ioannis Mouratidis, Martin Hemberg, Nadav Ahituv
Absent from DNA and protein: genomic characterization of nullomers and nullpeptides across functional categories and evolution. Genome biology 22 (1) (2021)
Carly V Weiss, Lana Harshman, Fumitaka Inoue, Hunter B Fraser, Dmitri A Petrov, Nadav Ahituv, David Gokhman
The cis-regulatory effects of modern human-specific variants. eLife 10 (2021)
Ryan S Ziffra, Chang N Kim, Jayden M Ross, Amy B Wilfert, Tychele N Turner, Maximilian Haeussler, Alex M Casella, Pawel F Przytycki, Kathleen C Keough, David Shin, Derek Bogdanoff, Anat Kreimer, Katherine S Pollard, Seth A Ament, Evan E Eichler, Nadav Ahituv, Tomasz Jan Nowakowski
Single-cell epigenomics reveals mechanisms of human cortical development. Nature 598 (7879) (2021)
William C Krause, Ruben Rodriguez, Bruno Gegenhuber, Navneet Matharu, Andreas N Rodriguez, Adriana M Padilla-Roger, Kenichi Toma, Candice B Herber, Stephanie M Correa, Xin Duan, Nadav Ahituv, Jessica Tollkuhn, Holly A Ingraham
Oestrogen engages brain MC4R signalling to drive physical activity in female mice. Nature 599 (7883) (2021)
Aki Ushiki, Yichi Zhang, Chenling Xiong, Jingjing Zhao, Ilias Georgakopoulos-Soares, Lauren Kane, Kirsty Jamieson, Michael J Bamshad, Deborah A Nickerson, null null, Yin Shen, Laura A Lettice, Elizabeth Lemos Silveira-Lucas, Florence Petit, Nadav Ahituv
Deletion of CTCF sites in the SHH locus alters enhancer-promoter interactions and leads to acheiropodia. Nature communications 12 (1) (2021)
Navneet Matharu, Nadav Ahituv
Modulating gene regulation to treat genetic disorders. Nature reviews. Drug discovery 19 (11) (2020)
Jason C Klein, Vikram Agarwal, Fumitaka Inoue, Aidan Keith, Beth Martin, Martin Kircher, Nadav Ahituv, Jay Shendure
A systematic evaluation of the design and context dependencies of massively parallel reporter assays. Nature methods 17 (11) (2020)
Mariam Okhovat, Kimberly A Nevonen, Brett A Davis, Pryce Michener, Samantha Ward, Mark Milhaven, Lana Harshman, Ajuni Sohota, Jason D Fernandes, Sofie R Salama, Rachel J O'Neill, Nadav Ahituv, Krishna R Veeramah, Lucia Carbone
Co-option of the lineage-specific LAVA retrotransposon in the gibbon genome. Proceedings of the National Academy of Sciences of the United States of America 117 (32) (2020)
M Grace Gordon, Fumitaka Inoue, Beth Martin, Max Schubach, Vikram Agarwal, Sean Whalen, Shiyun Feng, Jingjing Zhao, Tal Ashuach, Ryan Ziffra, Anat Kreimer, Ilias Georgakopoulos-Soares, Nir Yosef, Chun Jimmie Ye, Katherine S Pollard, Jay Shendure, Martin Kircher, Nadav Ahituv
lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements. Nature protocols 15 (8) (2020)
M Grace Gordon, Fumitaka Inoue, Beth Martin, Max Schubach, Vikram Agarwal, Sean Whalen, Shiyun Feng, Jingjing Zhao, Tal Ashuach, Ryan Ziffra, Anat Kreimer, Ilias Georgakopoulos-Soares, Nir Yosef, Chun Jimmie Ye, Katherine S Pollard, Jay Shendure, Martin Kircher, Nadav Ahituv
Author Correction: lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements. Nature protocols (2020)
Joon-Yong An, Kevin Lin, Lingxue Zhu, Donna M Werling, Shan Dong, Harrison Brand, Harold Z Wang, Xuefang Zhao, Grace B Schwartz, Ryan L Collins, Benjamin B Currall, Claudia Dastmalchi, Jeanselle Dea, Clif Duhn, Michael C Gilson, Lambertus Klei, Lindsay Liang, Eirene Markenscoff-Papadimitriou, Sirisha Pochareddy, Nadav Ahituv, Joseph D Buxbaum, Hilary Coon, Mark J Daly, Young Shin Kim, Gabor T Marth, Benjamin M Neale, Aaron R Quinlan, John L Rubenstein, Nenad Sestan, Matthew W State, A Jeremy Willsey, Michael E Talkowski, Bernie Devlin, Kathryn Roeder, Stephan J Sanders
Genome-wide de novo risk score implicates promoter variation in autism spectrum disorder. Science (New York, N.Y.) 362 (6420) (2019)
Dustin Shigaki, Orit Adato, Aashish N Adhikari, Shengcheng Dong, Alex Hawkins-Hooker, Fumitaka Inoue, Tamar Juven-Gershon, Henry Kenlay, Beth Martin, Ayoti Patra, Dmitry D Penzar, Max Schubach, Chenling Xiong, Zhongxia Yan, Alan P Boyle, Anat Kreimer, Ivan V Kulakovskiy, John Reid, Ron Unger, Nir Yosef, Jay Shendure, Nadav Ahituv, Martin Kircher, Michael A Beer
Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay. Human mutation 40 (9) (2019)
Anat Kreimer, Zhongxia Yan, Nadav Ahituv, Nir Yosef
Meta-analysis of massively parallel reporter assays enables prediction of regulatory function across cell types. Human mutation 40 (9) (2019)
Zhaoyang Liu, Garrett W D Easson, Jingjing Zhao, Nadja Makki, Nadav Ahituv, Matthew J Hilton, Simon Y Tang, Ryan S Gray
Dysregulation of STAT3 signaling is associated with endplate-oriented herniations of the intervertebral disc in Adgrg6 mutant mice. PLoS genetics 15 (10) (2019)
Martin Kircher, Chenling Xiong, Beth K Martin, Max Schubach, Fumitaka Inoue, Robert J A Bell, Joseph F Costello, Jay Shendure, Nadav Ahituv
Saturation mutagenesis of twenty disease-associated regulatory elements at single base-pair resolution. Nature communications 10 (1) (2019)
Fumitaka Inoue, Walter L Eckalbar, Yi Wang, Karl K Murphy, Navneet Matharu, Christian Vaisse, Nadav Ahituv
Genomic and epigenomic mapping of leptin-responsive neuronal populations involved in body weight regulation. Nature metabolism 1 (4) (2019)
Navneet Matharu, Sawitree Rattanasopha, Serena Tamura, Lenka Maliskova, Yi Wang, Adelaide Bernard, Aaron I Hardin, Walter L Eckalbar, Christian Vaisse, Nadav Ahituv
CRISPR-mediated activation of a promoter or enhancer rescues obesity caused by haploinsufficiency. Science (New York, N.Y.) 363 (6424) (2018)
Rivka Sukenik Halevy, Huan-Chieh Chien, Bo Heinz, Michael J Bamshad, Deborah A Nickerson, null null, Martin Kircher, Nadav Ahituv
Mutations in the fourth β-propeller domain of LRP4 are associated with isolated syndactyly with fusion of the third and fourth fingers. Human mutation 39 (6) (2018)
Ann H Ryu, Walter L Eckalbar, Anat Kreimer, Nir Yosef, Nadav Ahituv
Use antibiotics in cell culture with caution: genome-wide identification of antibiotic-induced changes in gene expression and regulation. Scientific reports 7 (1) (2017)
Fumitaka Inoue, Martin Kircher, Beth K Martin, Gregory M Cooper, Daniela M Witten, Michael T McManus, Nadav Ahituv, Jay Shendure
A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity. Genome research 27 (1) (2016)

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Nadav Ahituv