Andrew D Beggs (Andrew Beggs)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 40

Top Venues

Cancers

Nature communications

International journal of molecular sciences

Proceedings of the National Academy of Sciences of the United States of America

Queen Elizabeth Hospital Birmingham

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Queen Elizabeth Hospital Birmingham

United Kingdom

Consultant in Colorectal & General Surgery

Alan Turing Institute

United Kingdom

Turing Fellow

Publications

James M Halle-Smith, Hayden Pearce, Samantha Nicol, Lewis A Hall, Sarah F Powell-Brett, Andrew D Beggs, Tariq Iqbal, Paul Moss, Keith J Roberts
Involvement of the Gut Microbiome in the Local and Systemic Immune Response to Pancreatic Ductal Adenocarcinoma. Cancers 16 (5) (2024)
James M Halle-Smith, Hayden Pearce, Samantha Nicol, Lewis A Hall, Sarah F Powell-Brett, Andrew D Beggs, Tariq Iqbal, Paul Moss, Keith J Roberts
Involvement of the Gut Microbiome in the Local and Systemic Immune Response to Pancreatic Ductal Adenocarcinoma. Cancers 16 (5) (2024)
Anne G Lincoln, Sally C Benton, Carolyn Piggott, Shama Riaz Sheikh, Andrew D Beggs, Leah Buckley, Bianca DeSouza, James E East, Pete Sanders, Michael Lim, Donal Sheehan, Katie Snape, Helen Hanson, John R Greenaway, John Burn, David Nylander, Menna Hawkins, Fiona Lalloo, Kate Green, Thomas J Lee, Julie Walker, Gillian Matthews, Terry Rutherford, Peter D Sasieni, Kevin J Monahan
Risk-stratified faecal immunochemical testing (FIT) for urgent colonoscopy in Lynch syndrome during the COVID-19 pandemic. BJS open 7 (5) (2023)
Daniel Fisch, Moritz M Pfleiderer, Eleni Anastasakou, Gillian M Mackie, Fabian Wendt, Xiangyang Liu, Barbara Clough, Samuel Lara-Reyna, Vesela Encheva, Ambrosius P Snijders, Hironori Bando, Masahiro Yamamoto, Andrew D Beggs, Jason Mercer, Avinash Ravindranath Shenoy, Bernd Wollscheid, Kendle M Maslowski, Wojciech P Galej, Eva-Maria Frickel
PIM1 controls GBP1 activity to limit self-damage and to guard against pathogen infection. Science (New York, N.Y.) 382 (6666) (2023)
Toritseju Oluwafunmilayo Sillo, Andrew D Beggs, Gary Middleton, Akinfemi Ayobami Akingboye
The Gut Microbiome, Microsatellite Status and the Response to Immunotherapy in Colorectal Cancer. International journal of molecular sciences 24 (6) (2023)
Toritseju Oluwafunmilayo Sillo, Andrew D Beggs, Gary Middleton, Akinfemi Ayobami Akingboye
The Gut Microbiome, Microsatellite Status and the Response to Immunotherapy in Colorectal Cancer. International journal of molecular sciences 24 (6) (2023)
Joseph W Wragg, Paige-Louise White, Yavor Hadzhiev, Kasun Wanigasooriya, Agata Stodolna, Louise Tee, Joao D Barros-Silva, Andrew D Beggs, Ferenc Müller
Intra-promoter switch of transcription initiation sites in proliferation signaling-dependent RNA metabolism. Nature structural & molecular biology (2023)
Shafquat Zaman, Akinfemi Akingboye, Ali Yasen Y Mohamedahmed, Elizabeth Peterknecht, Pratik Bhattacharya, Mohammed E El-Asrag, Tariq H Iqbal, Mohammed Nabil Nabil Quraishi, Andrew D Beggs
Faecal microbiota transplantation (FMT) in the treatment of chronic refractory pouchitis: A systematic review and meta-analysis. Journal of Crohn's & colitis (2023)
George E Ronson, Katarzyna Starowicz, Elizabeth J Anthony, Ann Liza Piberger, Lucy C Clarke, Alexander J Garvin, Andrew D Beggs, Celina M Whalley, Matthew J Edmonds, James F J Beesley, Joanna R Morris
Mechanisms of synthetic lethality between BRCA1/2 and 53BP1 deficiencies and DNA polymerase theta targeting. Nature communications 14 (1) (2023)
James M Halle-Smith, Lewis A Hall, Sarah F Powell-Brett, Nabeel Merali, Adam Enver Frampton, Andrew D Beggs, Paul Moss, Keith J Roberts
Pancreatic Exocrine Insufficiency and the Gut Microbiome in Pancreatic Cancer: A Target for Future Diagnostic Tests and Therapies? Cancers 15 (21) (2023)
Toritseju Oluwafunmilayo Sillo, Andrew D Beggs, Gary Middleton, Akinfemi Ayobami Akingboye
The Gut Microbiome, Microsatellite Status and the Response to Immunotherapy in Colorectal Cancer. International journal of molecular sciences 24 (6) (2023)
Oliver J Pickles, Kasun Wanigasooriya, Anetta Ptasinska, Akshay Jatin Patel, Helen L Robbins, Claire Bryer, Celina M Whalley, Louise Tee, Neeraj Lal, Claudia M A Pinna, Nahla Elzefzafy, Philippe Taniere, Andrew D Beggs, Gary M Middleton
MHC Class II is Induced by IFNγ and Follows Three Distinct Patterns of Expression in Colorectal Cancer Organoids. Cancer research communications 3 (8) (2023)
Sofie Bosch, Animesh Acharjee, Mohammed N Quraishi, Patricia Rojas, Abdellatif Bakkali, Erwin Ew Jansen, Marina Brizzio Brentar, Johan Kuijvenhoven, Pieter Stokkers, Eduard Struys, Andrew D Beggs, Georgios V Gkoutos, Tim Gj de Meij, Nanne Kh de Boer
The potential of fecal microbiota and amino acids to detect and monitor patients with adenoma. Gut microbes 14 (1) (2022)
Kristiaan J Lenos, Sander Bach, Leandro Ferreira Moreno, Sanne Ten Hoorn, Nina R Sluiter, Sanne Bootsma, Felipe A Vieira Braga, Lisanne E Nijman, Tom van den Bosch, Daniel M Miedema, Erik van Dijk, Bauke Ylstra, Ruth Kulicke, Fred P Davis, Nicolas Stransky, Gromoslaw A Smolen, Robert R J Coebergh van den Braak, Jan Nicolaas Maria IJzermans, John W M Martens, Sally Hallam, Andrew D Beggs, Geert J P L Kops, Nico Lansu, Vivian P Bastiaenen, Charlotte E L Klaver, Maria C Lecca, Khalid El Makrini, Clara C Elbers, Mark P G Dings, Carel J M van Noesel, Onno W Kranenburg, Jan Paul Medema, Jan Koster, Lianne Koens, Cornelis J A Punt, Pieter J Tanis, Ignace H de Hingh, Maarten F Bijlsma, Jurriaan B Tuynman, Louis Vermeulen
Molecular characterization of colorectal cancer related peritoneal metastatic disease. Nature communications 13 (1) (2022)
Dale Vimalachandran, Robert P Jones, Edward A Dickson, Jaspreet Seehra, Austin Acheson, Ewen Alexander Griffiths, Sivesh Kathir Kamarajah, Elaine Leung, Andrew Torrance, Christian Ottensmeier, Andrew D Beggs, Ellen Whiteside, Helen Sanna, Danielle Bury, Esther Youd, Gareth Leopold, Matthew Pugh, Sudha Sundar, Graham S Taylor
SARS-CoV-2 in the abdomen or pelvis: SAFE SURGERY study. The British journal of surgery (2022)
Valerie Pestinger, Matthew Smith, Toju Sillo, John M Findlay, Jean-Francois Laes, Gerald Martin, Gary Middleton, Phillipe Taniere, Andrew D Beggs
Use of an Integrated Pan-Cancer Oncology Enrichment Next-Generation Sequencing Assay to Measure Tumour Mutational Burden and Detect Clinically Actionable Variants. Molecular diagnosis & therapy 24 (3) (2021)
Regina Andrijes, Rahul K Hejmadi, Matthew Richard Pugh, Sundaresan Rajesh, Vera Novitskaya, Maha Ibrahim, Michael Overduin, Chris Tselepis, Gary W Middleton, Balázs Győrffy, Andrew D Beggs, Fedor Berditchevski
Tetraspanin 6 is a regulator of carcinogenesis in colorectal cancer. Proceedings of the National Academy of Sciences of the United States of America 118 (39) (2021)
Agata Stodolna, Miao He, Mahesh Vasipalli, Zoya Kingsbury, Jennifer Becq, Joanne D Stockton, Mark P Dilworth, Jonathan James, Toju Sillo, Daniel Blakeway, Stephen T Ward, Tariq Ismail, Mark T Ross, Andrew D Beggs
Clinical-grade whole-genome sequencing and 3' transcriptome analysis of colorectal cancer patients. Genome medicine 13 (1) (2021)
Joanne D Stockton, Thomas Nieto, Elizabeth Wroe, Anthony Poles, Nicholas Inston, David Briggs, Andrew D Beggs
Rapid, highly accurate and cost-effective open-source simultaneous complete HLA typing and phasing of class I and II alleles using nanopore sequencing. HLA 96 (2) (2021)
Jake G Carter, Lorea Orueta Iturbe, Jean-Louis H A Duprey, Ian R Carter, Craig D Southern, Marium Rana, Celina M Whalley, Andrew Bosworth, Andrew D Beggs, Matthew R Hicks, James H R Tucker, Timothy R Dafforn
Ultrarapid detection of SARS-CoV-2 RNA using a reverse transcription-free exponential amplification reaction, RTF-EXPAR. Proceedings of the National Academy of Sciences of the United States of America 118 (35) (2021)
Susan E Manzoor, Shafquat Zaman, Celina Whalley, David Inglis, Andrew Bosworth, Michael Kidd, Sahida Shabir, Nabil Quraishi, Christopher A Green, Tariq Iqbal, Andrew D Beggs
Multi-modality detection of SARS-CoV-2 in faecal donor samples for transplantation and in asymptomatic emergency surgical admissions. F1000Research 10 (2021)
Oliver Phipps, Mohammed N Quraishi, Edward A Dickson, Helen Steed, Aditi Kumar, Austin G Acheson, Andrew D Beggs, Matthew James Brookes, Hafid Omar Al-Hassi
Differences in the On- and Off-Tumor Microbiota between Right- and Left-Sided Colorectal Cancer. Microorganisms 9 (5) (2021)
Celina Whalley, Karl Payne, Enric Domingo, Andrew Blake, Susan D Richman, Jill Brooks, Nikolaos Batis, Rachel Spruce, null null, Hisham Mehanna, Paul Nankivell, Andrew D Beggs
Ultra-Low DNA Input into Whole Genome Methylation Assays and Detection of Oncogenic Methylation and Copy Number Variants in Circulating Tumour DNA. Epigenomes 5 (2021)
Joanne D Stockton, Louise Tee, Celina Whalley, Jonathan James, Mark Dilworth, Rachel Wheat, Thomas Nieto, null null, Ian Geh, João D Barros-Silva, Andrew D Beggs
Complete response to neoadjuvant chemoradiotherapy in rectal cancer is associated with RAS/AKT mutations and high tumour mutational burden. Radiation oncology (London, England) 16 (1) (2021)
Oliver Phipps, Hafid Omar Al-Hassi, Mohammed N Quraishi, Edward A Dickson, Jonathan P Segal, Helen Steed, Aditi Kumar, Austin G Acheson, Andrew D Beggs, Matthew James Brookes
Oral and Intravenous Iron Therapy Differentially Alter the On- and Off-Tumor Microbiota in Anemic Colorectal Cancer Patients. Cancers 13 (6) (2021)
Robert Tyler, Mark P Dilworth, Jonathan James, Daniel Blakeway, Joanne D Stockton, Dion G Morton, Phillipe Taniere, David Gourevitch, Anant Desai, Andrew D Beggs
The molecular landscape of well differentiated retroperitoneal liposarcoma. The Journal of pathology 255 (2) (2021)
Hayley Crawford, Gaia Scerif, Lucy Wilde, Andrew D Beggs, Joanne Stockton, Pria Sandhu, Lauren Shelley, Chris Oliver, Joseph McCleery
Genetic modifiers in rare disorders: the case of fragile X syndrome. European journal of human genetics : EJHG 29 (1) (2020)
Hagen Schwenzer, Mai Abdel Mouti, Pia Neubert, Josephine Morris, Joanne D Stockton, Sarah Bonham, Martin Fellermeyer, James Chettle, Roman Fischer, Andrew D Beggs, Sarah P Blagden
LARP1 isoform expression in human cancer cell lines. RNA biology 18 (2) (2020)
Kasun Wanigasooriya, Priyanka Palimar, David N Naumann, Khalida Ismail, Jodie L Fellows, Peter Logan, Christopher V Thompson, Helen Bermingham, Andrew D Beggs, Tariq Ismail
Mental health symptoms in a cohort of hospital healthcare workers following the first peak of the COVID-19 pandemic in the UK. BJPsych open 7 (1) (2020)
Korsuk Sirinukunwattana, Enric Domingo, Susan D Richman, Keara L Redmond, Andrew Blake, Clare Verrill, Simon J Leedham, Aikaterini Chatzipli, Claire Hardy, Celina M Whalley, Chieh-Hsi Wu, Andrew D Beggs, Ultan McDermott, Philip David Dunne, Angela Meade, Steven M Walker, Graeme I Murray, Leslie Samuel, Matthew Seymour, Ian P M Tomlinson, Phil Quirke, Timothy S Maughan, Jens Rittscher, Viktor Hendrik Koelzer, null null
Image-based consensus molecular subtype (imCMS) classification of colorectal cancer using deep learning. Gut 70 (3) (2020)
Richard D Horniblow, Pritesh Mistry, Mohammed N Quraishi, Andrew D Beggs, Tom Van de Wiele, Tariq H Iqbal, Chris Tselepis
The Safety and Tolerability of a Potential Alginate-Based Iron Chelator; Results of A Healthy Participant Study. Nutrients 11 (3) (2019)
Sam O Kleeman, Viktor H Koelzer, Helen Js Jones, Ester Gil Vazquez, Hayley L Belnoue-Davis, James E East, Roland Arnold, Martijn Aj Koppens, Andrew Blake, Enric Domingo, Chris Cunningham, Andrew D Beggs, Valerie Pestinger, Maurice B Loughrey, Lai-Mun Wang, Tamsin Rm Lannagan, Susan L Woods, Daniel Worthley, S Cort Consortium, Ian P M Tomlinson, Philip David Dunne, Timothy Maughan, Simon J Leedham
Exploiting differential Wnt target gene expression to generate a molecular biomarker for colorectal cancer stratification. Gut 69 (6) (2019)
Jill M Brooks, Albert N Menezes, Maha Ibrahim, Lucinda Archer, Neeraj Lal, Christopher J Bagnall, Sandra Lucia Ventorin Von Zeidler, Helen R Valentine, Rachel J Spruce, Nikolaos Batis, Jennifer L Bryant, Margaret Hartley, Baksho Kaul, Gordon B Ryan, Riyue Bao, Arun Khattri, Steven P Lee, Kalu U E Ogbureke, Gary Middleton, Daniel A Tennant, Andrew D Beggs, Jonathan J Deeks, Catharine M L West, Jean-Baptiste Cazier, Benjamin E Willcox, Tanguy Y Seiwert, Hisham Mehanna
Development and Validation of a Combined Hypoxia and Immune Prognostic Classifier for Head and Neck Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 25 (17) (2019)
Sara Althubaiti, Andreas Karwath, Ashraf Dallol, Adeeb Noor, Shadi Salem Alkhayyat, Rolina Alwassia, Katsuhiko Mineta, Takashi Gojobori, Andrew D Beggs, Paul N Schofield, Georgios V Gkoutos, Hoehndorf Robert
Ontology-based prediction of cancer driver genes. Scientific reports 9 (1) (2019)
Daniel Temko, Inge C Van Gool, Emily Rayner, Mark Glaire, Seiko Makino, Matthew Brown, Laura Chegwidden, Claire Palles, Jeroen Depreeuw, Andrew D Beggs, Chaido Stathopoulou, John Mason, Ann-Marie Baker, Marc Williams, Vincenzo Cerundolo, Margarida Rei, Jenny C Taylor, Anna Schuh, Ahmed Ahmed, Frédéric Amant, Diether Lambrechts, Vincent Thbm Smit, Tjalling Bosse, Trevor A Graham, David N Church, Ian Tomlinson
Somatic POLE exonuclease domain mutations are early events in sporadic endometrial and colorectal carcinogenesis, determining driver mutational landscape, clonal neoantigen burden and immune response. The Journal of pathology 245 (3) (2018)
Salam A Assi, Maria Rosaria Imperato, Daniel J L Coleman, Anna Pickin, Sandeep Potluri, Anetta Ptasinska, Paulynn Suyin Chin, Helen Blair, Pierre Cauchy, Sally R James, Joaquin Zacarias-Cabeza, L Niall Gilding, Andrew D Beggs, Sam Clokie, Justin C Loke, Phil Jenkin, Ash Uddin, Ruud Delwel, Stephen J Richards, Manoj Raghavan, Michael J Griffiths, Olaf Heidenreich, Peter N Cockerill, Constanze Bonifer
Subtype-specific regulatory network rewiring in acute myeloid leukemia. Nature genetics 51 (1) (2018)
Miten Jain, Sergey Koren, Karen H Miga, Josh Quick, Arthur C Rand, Thomas A Sasani, John R Tyson, Andrew D Beggs, Alexander T Dilthey, Ian T Fiddes, Sunir Malla, Hannah Marriott, Tom Nieto, Justin O'Grady, Hugh E Olsen, Brent S Pedersen, Arang Rhie, Hollian Richardson, Aaron R Quinlan, Terrance P Snutch, Louise Tee, Benedict Paten, Adam M Phillippy, Jared T Simpson, Nicholas J Loman, Matthew William Loose
Nanopore sequencing and assembly of a human genome with ultra-long reads. Nature biotechnology 36 (4) (2018)
Richard M Powell, David Lissauer, Jennifer Tamblyn, Andrew D Beggs, Philip Cox, Paul A H Moss, Mark D Kilby
Decidual T Cells Exhibit a Highly Differentiated Phenotype and Demonstrate Potential Fetal Specificity and a Strong Transcriptional Response to IFN. Journal of immunology (Baltimore, Md. : 1950) 199 (10) (2017)
Neeraj Lal, Carrie R Willcox, Andrew D Beggs, Philippe Taniere, Aarti Shikotra, Peter Bradding, Richard Adams, David Fisher, Gary Middleton, Chris Tselepis, Benjamin E Willcox
Endothelial protein C receptor is overexpressed in colorectal cancer as a result of amplification and hypomethylation of chromosome 20q. The journal of pathology. Clinical research 3 (3) (2017)
Ann-Marie Baker, Weini Huang, Xiao-Ming Mindy Wang, Marnix Jansen, Xiao-Jun Ma, Jeffrey Kim, Courtney M Anderson, Xingyong Wu, Liuliu Pan, Nan Su, Yuling Luo, Enric Domingo, Timon Heide, Andrea Sottoriva, Annabelle Lewis, Andrew D Beggs, Nicholas A Wright, Manuel Rodriguez-Justo, Emily Park, Ian P M Tomlinson, Trevor A Graham
Robust RNA-based in situ mutation detection delineates colorectal cancer subclonal evolution. Nature communications 8 (1) (2017)

Andrew D Beggs.css-eqlu8i{font-size:small;padding-left:4px;} (Andrew Beggs)

Publication Activity (10 Years)

Top Topics

Top Venues

Andrew D Beggs (Andrew Beggs)