Vincent Zoete (Zoete Vincent)

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 41

Top Topics

Molecular Dynamics Simulations

Top Venues

International journal of molecular sciences

Nature biotechnology

Nature chemical biology

Journal of chemical information and modeling

This page only lists publications with an associated author ORCID identifier.

Publications

Marine Bugnon, Ute F Röhrig, Mathilde Goullieux, Marta A S Perez, Antoine Daina, Olivier Michielin, Vincent Zoete
SwissDock 2024: major enhancements for small-molecule docking with Attracting Cavities and AutoDock Vina. Nucleic acids research (2024)
Rémy Pétremand, Johanna Chiffelle, Sara Bobisse, Marta A S Perez, Julien Schmidt, Marion Arnaud, David Barras, Maria Lozano-Rabella, Raphaël Genolet, Christophe Sauvage, Damien Saugy, Alexandra Michel, Anne-Laure Huguenin-Bergenat, Charlotte Capt, Jonathan S Moore, Claudio De Vito, S Intidhar Labidi-Galy, Lana Elias Kandalaft, Denarda Dangaj Laniti, Michal Bassani-Sternberg, Giacomo Oliveira, Catherine J Wu, Sergio A Quezada, Vincent Zoete, Alexandre Harari
Author Correction: Identification of clinically relevant T cell receptors for personalized T cell therapy using combinatorial algorithms. Nature biotechnology (2024)
Aaron S Petruzzella, Marine Bruand, Albert Santamaria-Martinez, Natalya Katanayeva, Luc Reymond, Sarah Wehrle, Sandrine Georgeon, Damla Inel, Floris J van Dalen, David Viertl, Kelvin Lau, Florence Pojer, Margret Schottelius, Vincent Zoete, Martijn Verdoes, Caroline Arber, Bruno E Correia, Elisa Oricchio
Antibody-peptide conjugates deliver covalent inhibitors blocking oncogenic cathepsins. Nature chemical biology 20 (9) (2024)
Aaron S Petruzzella, Marine Bruand, Albert Santamaria-Martinez, Natalya Katanayeva, Luc Reymond, Sarah Wehrle, Sandrine Georgeon, Damla Inel, Floris J van Dalen, David Viertl, Kelvin Lau, Florence Pojer, Margret Schottelius, Vincent Zoete, Martijn Verdoes, Caroline Arber, Bruno E Correia, Elisa Oricchio
Antibody-peptide conjugates deliver covalent inhibitors blocking oncogenic cathepsins. Nature chemical biology 20 (9) (2024)
Marine Bugnon, Ute F Röhrig, Mathilde Goullieux, Marta A S Perez, Antoine Daina, Olivier Michielin, Vincent Zoete
SwissDock 2024: major enhancements for small-molecule docking with Attracting Cavities and AutoDock Vina. Nucleic acids research 52 (W1) (2024)
Marta A S Perez, Johanna Chiffelle, Sara Bobisse, Francesca Mayol-Rullan, Marine Bugnon, Maiia E Bragina, Marion Arnaud, Christophe Sauvage, David Barras, Denarda Dangaj Laniti, Florian Huber, Michal Bassani-Sternberg, George Coukos, Alexandre Harari, Vincent Zoete
Predicting Antigen-Specificities of Orphan T Cell Receptors from Cancer Patients with TCRpcDist. Advanced science (Weinheim, Baden-Wurttemberg, Germany) (2024)
Aaron S Petruzzella, Marine Bruand, Albert Santamaria-Martinez, Natalya Katanayeva, Luc Reymond, Sarah Wehrle, Sandrine Georgeon, Damla Inel, Floris J van Dalen, David Viertl, Kelvin Lau, Florence Pojer, Margret Schottelius, Vincent Zoete, Martijn Verdoes, Caroline Arber, Bruno E Correia, Elisa Oricchio
Antibody-peptide conjugates deliver covalent inhibitors blocking oncogenic cathepsins. Nature chemical biology (2024)
Rémy Pétremand, Johanna Chiffelle, Sara Bobisse, Marta A S Perez, Julien Schmidt, Marion Arnaud, David Barras, Maria Lozano-Rabella, Raphaël Genolet, Christophe Sauvage, Damien Saugy, Alexandra Michel, Anne-Laure Huguenin-Bergenat, Charlotte Capt, Jonathan S Moore, Claudio De Vito, S Intidhar Labidi-Galy, Lana Elias Kandalaft, Denarda Dangaj Laniti, Michal Bassani-Sternberg, Giacomo Oliveira, Catherine J Wu, Sergio A Quezada, Vincent Zoete, Alexandre Harari
Identification of clinically relevant T cell receptors for personalized T cell therapy using combinatorial algorithms. Nature biotechnology (2024)
Simon Burgermeister, Simona Stoykova, Fanny S Krebs, Vincent Zoete, Martial Mbefo, Kristof Egervari, Antoine Reinhard, Bettina Bisig, Ekkehard Hewer
Methylation-Based Characterization of a New IDH2 Mutation in Sinonasal Undifferentiated Carcinoma. International journal of molecular sciences 25 (12) (2024)
Rémy Pétremand, Johanna Chiffelle, Sara Bobisse, Marta A S Perez, Julien Schmidt, Marion Arnaud, David Barras, Maria Lozano-Rabella, Raphaël Genolet, Christophe Sauvage, Damien Saugy, Alexandra Michel, Anne-Laure Huguenin-Bergenat, Charlotte Capt, Jonathan S Moore, Claudio De Vito, S Intidhar Labidi-Galy, Lana Elias Kandalaft, Denarda Dangaj Laniti, Michal Bassani-Sternberg, Giacomo Oliveira, Catherine J Wu, Sergio A Quezada, Vincent Zoete, Alexandre Harari
Identification of clinically relevant T cell receptors for personalized T cell therapy using combinatorial algorithms. Nature biotechnology (2024)
Simon Burgermeister, Simona Stoykova, Fanny S Krebs, Vincent Zoete, Martial Mbefo, Kristof Egervari, Antoine Reinhard, Bettina Bisig, Ekkehard Hewer
Methylation-Based Characterization of a New IDH2 Mutation in Sinonasal Undifferentiated Carcinoma. International journal of molecular sciences 25 (12) (2024)
Marine Bugnon, Ute F Röhrig, Mathilde Goullieux, Marta A S Perez, Antoine Daina, Olivier Michielin, Vincent Zoete
SwissDock 2024: major enhancements for small-molecule docking with Attracting Cavities and AutoDock Vina. Nucleic acids research 52 (W1) (2024)
Rémy Pétremand, Johanna Chiffelle, Sara Bobisse, Marta A S Perez, Julien Schmidt, Marion Arnaud, David Barras, Maria Lozano-Rabella, Raphaël Genolet, Christophe Sauvage, Damien Saugy, Alexandra Michel, Anne-Laure Huguenin-Bergenat, Charlotte Capt, Jonathan S Moore, Claudio De Vito, S Intidhar Labidi-Galy, Lana Elias Kandalaft, Denarda Dangaj Laniti, Michal Bassani-Sternberg, Giacomo Oliveira, Catherine J Wu, Sergio A Quezada, Vincent Zoete, Alexandre Harari
Identification of clinically relevant T cell receptors for personalized T cell therapy using combinatorial algorithms. Nature biotechnology (2024)
Aaron S Petruzzella, Marine Bruand, Albert Santamaria-Martinez, Natalya Katanayeva, Luc Reymond, Sarah Wehrle, Sandrine Georgeon, Damla Inel, Floris J van Dalen, David Viertl, Kelvin Lau, Florence Pojer, Margret Schottelius, Vincent Zoete, Martijn Verdoes, Caroline Arber, Bruno E Correia, Elisa Oricchio
Antibody-peptide conjugates deliver covalent inhibitors blocking oncogenic cathepsins. Nature chemical biology (2024)
Simon Burgermeister, Simona Stoykova, Fanny S Krebs, Vincent Zoete, Martial Mbefo, Kristof Egervari, Antoine Reinhard, Bettina Bisig, Ekkehard Hewer
Methylation-Based Characterization of a New IDH2 Mutation in Sinonasal Undifferentiated Carcinoma. International journal of molecular sciences 25 (12) (2024)
Aaron S Petruzzella, Marine Bruand, Albert Santamaria-Martinez, Natalya Katanayeva, Luc Reymond, Sarah Wehrle, Sandrine Georgeon, Damla Inel, Floris J van Dalen, David Viertl, Kelvin Lau, Florence Pojer, Margret Schottelius, Vincent Zoete, Martijn Verdoes, Caroline Arber, Bruno E Correia, Elisa Oricchio
Antibody-peptide conjugates deliver covalent inhibitors blocking oncogenic cathepsins. Nature chemical biology (2024)
Rémy Pétremand, Johanna Chiffelle, Sara Bobisse, Marta A S Perez, Julien Schmidt, Marion Arnaud, David Barras, Maria Lozano-Rabella, Raphaël Genolet, Christophe Sauvage, Damien Saugy, Alexandra Michel, Anne-Laure Huguenin-Bergenat, Charlotte Capt, Jonathan S Moore, Claudio De Vito, S Intidhar Labidi-Galy, Lana Elias Kandalaft, Denarda Dangaj Laniti, Michal Bassani-Sternberg, Giacomo Oliveira, Catherine J Wu, Sergio A Quezada, Vincent Zoete, Alexandre Harari
Author Correction: Identification of clinically relevant T cell receptors for personalized T cell therapy using combinatorial algorithms. Nature biotechnology (2024)
Mathilde Goullieux, Vincent Zoete, Ute F Röhrig
Two-Step Covalent Docking with Attracting Cavities. Journal of chemical information and modeling (2023)
Fanny Seraphine Krebs, Bianca Moura, Edoardo Missiaglia, Veronica Aedo-Lopez, Olivier Michielin, Petros K Tsantoulis, Bettina Bisig, Mounir Trimech, Vincent Zoete, Krisztian Homicsko
Response and Resistance to Trametinib in MAP2K1-Mutant Triple-Negative Melanoma. International journal of molecular sciences 24 (5) (2023)
Ute F Röhrig, Mathilde Goullieux, Marine Bugnon, Vincent Zoete
Attracting Cavities 2.0: Improving the Flexibility and Robustness for Small-Molecule Docking. Journal of chemical information and modeling (2023)
Fanny Seraphine Krebs, Bianca Moura, Edoardo Missiaglia, Veronica Aedo-Lopez, Olivier Michielin, Petros K Tsantoulis, Bettina Bisig, Mounir Trimech, Vincent Zoete, Krisztian Homicsko
Response and Resistance to Trametinib in MAP2K1-Mutant Triple-Negative Melanoma. International journal of molecular sciences 24 (5) (2023)
Fanny Seraphine Krebs, Bianca Moura, Edoardo Missiaglia, Veronica Aedo-Lopez, Olivier Michielin, Petros K Tsantoulis, Bettina Bisig, Mounir Trimech, Vincent Zoete, Krisztian Homicsko
Response and Resistance to Trametinib in MAP2K1-Mutant Triple-Negative Melanoma. International journal of molecular sciences 24 (5) (2023)
Marine Bugnon, Mathilde Goullieux, Ute F Röhrig, Marta A S Perez, Antoine Daina, Olivier Michielin, Vincent Zoete
SwissParam 2023: A Modern Web-Based Tool for Efficient Small Molecule Parametrization. Journal of chemical information and modeling (2023)
Maiia E Bragina, Antoine Daina, Marta A S Perez, Olivier Michielin, Vincent Zoete
The SwissSimilarity 2021 Web Tool: Novel Chemical Libraries and Additional Methods for an Enhanced Ligand-Based Virtual Screening Experience. International journal of molecular sciences 23 (2) (2022)
Ute F Röhrig, Somi Reddy Majjigapu, Pierre Vogel, Aline Reynaud, Florence Pojer, Nahzli Dilek, Patrick Reichenbach, Kelly Ascenção, Melita Irving, Sergio A Quezada, Olivier Michielin, Vincent Zoete
Structure-based optimization of type III indoleamine 2,3-dioxygenase 1 (IDO1) inhibitors. Journal of enzyme inhibition and medicinal chemistry 37 (1) (2022)
Cuozzo Alessandro, Antoine Daina, Marta A S Perez, Michielin Olivier, Vincent Zoete
SwissBioisostere 2021: updated structural, bioactivity and physicochemical data delivered by a reshaped web interface. Nucleic acids research (2021)
Ute F Röhrig, Somi Reddy Majjigapu, Aline Reynaud, Florence Pojer, Nahzli Dilek, Patrick Reichenbach, Kelly Ascencao, Melita Irving, George Coukos, Pierre Vogel, Olivier Michielin, Vincent Zoete
Azole-Based Indoleamine 2,3-Dioxygenase 1 (IDO1) Inhibitors. Journal of medicinal chemistry 64 (4) (2021)
Marion Arnaud, Johanna Chiffelle, Raphael Genolet, Blanca Navarro Rodrigo, Marta A S Perez, Florian Huber, Morgane Magnin, Tu Nguyen-Ngoc, Philippe Guillaume, Petra Baumgaertner, Chloe Chong, Brian J Stevenson, David Gfeller, Melita Irving, Daniel E Speiser, Julien Schmidt, Vincent Zoete, Lana Elias Kandalaft, Michal Bassani-Sternberg, Sara Bobisse, Sergio A Quezada, Alexandre Harari
Sensitive identification of neoantigens and cognate TCRs in human solid tumors. Nature biotechnology (2021)
Patrick S Merkle, Esben Trabjerg, Song Hongjian, Mathias Ferber, Michel A Cuendet, Thomas J D Jørgensen, Immanuel Luescher, Melita Irving, Vincent Zoete, Olivier Michielin, Kasper Dyrberg Rand
Probing the Conformational Dynamics of Affinity-Enhanced T Cell Receptor Variants upon Binding the Peptide-Bound Major Histocompatibility Complex by Hydrogen/Deuterium Exchange Mass Spectrometry. Biochemistry 60 (11) (2021)
Fanny S Krebs, Vincent Zoete, Maxence Trottet, Timothée Pouchon, Christophe Bovigny, Olivier Michielin
Swiss-PO: a new tool to analyze the impact of mutations on protein three-dimensional structures for precision oncology. NPJ precision oncology 5 (1) (2021)
Ute F Röhrig, Olivier Michielin, Vincent Zoete
Structure and Plasticity of Indoleamine 2,3-Dioxygenase 1 (IDO1). Journal of medicinal chemistry 64 (24) (2021)
Fanny S Krebs, Camille L Gerard, Alexandre Wicky, Veronica Aedo-Lopez, Edoardo Missiaglia, Bettina Bisig, Mounir Trimech, Olivier Michielin, Krisztian Homicsko, Vincent Zoete
Trametinib Induces the Stabilization of a Dual GNAQ p.Gly48Leu- and FGFR4 p.Cys172Gly-Mutated Uveal Melanoma. The Role of Molecular Modelling in Personalized Oncology. International journal of molecular sciences 21 (21) (2020)
Marta Spodzieja, Katarzyna Kuncewicz, Adam K Sieradzan, Agnieszka Karczyńska, Justyna Iwaszkiewicz, Valérie Cesson, Katarzyna Węgrzyn, Igor Zhukov, Martyna Maszota-Zieleniak, Olivier Michielin, Daniel E Speiser, Vincent Zoete, Laurent Derré, Sylwia Rodziewicz-Motowidło
Disulfide-Linked Peptides for Blocking BTLA/HVEM Binding. International journal of molecular sciences 21 (2) (2020)
Michele Graciotti, Fabio Marino, HuiSong Pak, Petra Baumgaertner, Anne-Christine Thierry, Johanna Chiffelle, Marta A S Perez, Vincent Zoete, Alexandre Harari, Michal Bassani-Sternberg, Lana Elias Kandalaft
Deciphering the Mechanisms of Improved Immunogenicity of Hypochlorous Acid-Treated Antigens in Anti-Cancer Dendritic Cell-Based Vaccines. Vaccines 8 (2) (2020)
Benoîte Bargeton, Justyna Iwaszkiewicz, Gaetano Bonifacio, Sophie Roy, Vincent Zoete, Stephan Kellenberger
Mutations in the palm domain disrupt modulation of acid-sensing ion channel 1a currents by neuropeptides. Scientific reports 9 (1) (2019)
Antoine Daina, Vincent Zoete
Application of the SwissDrugDesign Online Resources in Virtual Screening. International journal of molecular sciences 20 (18) (2019)
Krystel El Hage, Vincent Zoete
Strong Enrichment of Aromatic and Sulfur-Containing Residues in Ligand-Protein Binding Sites. Journal of chemical information and modeling 59 (11) (2019)
Ute F Röhrig, Aline Reynaud, Somi Reddy Majjigapu, Pierre Vogel, Florence Pojer, Vincent Zoete
Inhibition Mechanisms of Indoleamine 2,3-Dioxygenase 1 (IDO1). Journal of medicinal chemistry 62 (19) (2019)
Patrick S Merkle, Melita Irving, Song Hongjian, Mathias Ferber, Thomas J D Jørgensen, Kirsten Scholten, Immanuel Luescher, George Coukos, Vincent Zoete, Michel A Cuendet, Olivier Michielin, Kasper Dyrberg Rand
The T-Cell Receptor Can Bind to the Peptide-Bound Major Histocompatibility Complex and Uncomplexed β2-Microglobulin through Distinct Binding Sites. Biochemistry 56 (30) (2017)
Ute F Röhrig, Vincent Zoete, Olivier Michielin
The Binding Mode of N-Hydroxyamidines to Indoleamine 2,3-Dioxygenase 1 (IDO1). Biochemistry 56 (33) (2017)
Prasad Chaskar, Vincent Zoete, Ute F Röhrig
On-the-Fly QM/MM Docking with Attracting Cavities. Journal of chemical information and modeling 57 (1) (2016)