Allon M Klein (Allon Klein)

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 21

Top Topics

Particulate Matter

Dendritic Cells

Top Venues

Science (New York, N.Y.)

bioRxiv : the preprint server for biology

Nature biotechnology

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Tal Scully, Allon M Klein
A mannitol-based buffer improves single-cell RNA sequencing of high-salt marine cells. bioRxiv : the preprint server for biology (2023)
Ruben Bill, Pratyaksha Wirapati, Marius Messemaker, Whijae Roh, Beatrice Zitti, Florent Duval, Máté Kiss, Jong Chul Park, Talia M Saal, Jan Hoelzl, David Tarussio, Fabrizio Benedetti, Stéphanie R Tissot, Lana Elias Kandalaft, Marco Varrone, Giovanni Ciriello, Thomas A McKee, Yan Monnier, Maxime Mermod, Emily M Blaum, Irena Gushterova, Anna L K Gonye, Nir Hacohen, Gad A Getz, Thorsten R Mempel, Allon M Klein, Ralph Weissleder, William C Faquin Md PhD, Peter M Sadow, Derrick Lin, Sara I Pai, Moshe Sade-Feldman, Mikaël J Pittet
CXCL9:SPP1 macrophage polarity identifies a network of cellular programs that control human cancers. Science (New York, N.Y.) 381 (6657) (2023)
Tal Scully, Allon M Klein
A mannitol-based buffer improves single-cell RNA sequencing of high-salt marine cells. bioRxiv : the preprint server for biology (2023)
Tal Scully, Allon M Klein
A mannitol-based buffer improves single-cell RNA sequencing of high-salt marine cells. bioRxiv : the preprint server for biology (2023)
Shou-Wen Wang, Michael J Herriges, Killian Hurley, Darrell N Kotton, Allon M Klein
CoSpar identifies early cell fate biases from single-cell transcriptomic and lineage information. Nature biotechnology 40 (7) (2022)
Marie Siwicki, Nicolas A Gort-Freitas, Marius Messemaker, Ruben Bill, Jeremy Gungabeesoon, Camilla Engblom, Rapolas Zilionis, Christopher Garris, Genevieve M Gerhard, Anna Kohl, Yunkang Lin, Angela E Zou, Chiara Cianciaruso, Evangelia Bolli, Christina Pfirschke, Yi-Jang Lin, Cécile Piot, John E Mindur, Nilesh P Talele, Rainer H Kohler, Yoshiko Iwamoto, Mari A Mino-Kenudson, Sara I Pai, Claudio deVito, Thibaud Koessler, Doron Merkler, Alexander Coukos, Alexandre Wicky, Montserrat Fraga, Christine Sempoux, Rakesh K Jain, Pierre-Yves Dietrich, Olivier Michielin, Ralph Weissleder, Allon M Klein, Mikaël J Pittet
Resident Kupffer cells and neutrophils drive liver toxicity in cancer immunotherapy. Science immunology 6 (61) (2022)
Giorgia Maroni, Mahmoud Adel Bassal, Indira Krishnan, Chee Wai Fhu, Virginia Savova, Rapolas Zilionis, Valerie A Maymi, Nicole Pandell, Eva Csizmadia, Junyan Zhang, Barbara Storti, Julio Castaño, Riccardo Panella, Jia Li, Corinne E Gustafson, Sam Fox, Rachel D Levy, Claire V Meyerovitz, Peter J Tramontozzi, Kimberly Vermilya, Assunta De Rienzo, Stefania Crucitta, Daniela S Bassères, Marla Weetall, Art Branstrom, Alessandra Giorgetti, Raffaele Ciampi, Marzia Del Re, Romano Danesi, Ranieri Bizzarri, Henry Yang, Olivier Kocher, Allon M Klein, Robert S Welner, Raphael Bueno, Maria Cristina Magli, John Gerard Clohessy, Azhar Ali, Daniel Geoffrey Tenen, Elena Levantini
Identification of a targetable KRAS-mutant epithelial population in non-small cell lung cancer. Communications biology 4 (1) (2021)
Christina Pfirschke, Rapolas Zilionis, Camilla Engblom, Marius Messemaker, Angela E Zou, Steffen Rickelt, Nicolas A Gort-Freitas, Yunkang Lin, Ruben Bill, Marie Siwicki, Jeremy Gungabeesoon, Melissa M Sprachman, Angela N Marquard, Christopher Blake Rodell, Michael F Cuccarese, Jeremy Quintana, Maaz S Ahmed, Rainer H Kohler, Virginia Savova, Ralph Weissleder, Allon M Klein, Mikael J Pittet
Macrophage-targeted therapy unlocks antitumoral crosstalk between IFN𝛾-secreting lymphocytes and IL12-producing dendritic cells. Cancer immunology research (2021)
Daniel E Wagner, Allon M Klein
Lineage tracing meets single-cell omics: opportunities and challenges. Nature reviews. Genetics 21 (7) (2020)
Caleb Weinreb, Allon M Klein
Lineage reconstruction from clonal correlations. Proceedings of the National Academy of Sciences of the United States of America 117 (29) (2020)
Alejo E Rodriguez-Fraticelli, Caleb Weinreb, Shou-Wen Wang, Rosa P Migueles, Maja Jankovic, Marc Usart, Allon M Klein, Sally Lowell, Fernando D Camargo
Single-cell lineage tracing unveils a role for TCF15 in haematopoiesis. Nature 583 (7817) (2020)
Caleb Weinreb, Alejo E Rodriguez-Fraticelli, Fernando D Camargo, Allon M Klein
Lineage tracing on transcriptional landscapes links state to fate during differentiation. Science (New York, N.Y.) 367 (6479) (2020)
Joanna R DiSpirito, David Zemmour, Deepshika Ramanan, Jun Cho, Rapolas Zilionis, Allon M Klein, Christophe Benoist, Diane Mathis
Molecular diversification of regulatory T cells in nonlymphoid tissues. Science immunology 3 (27) (2019)
Danilo Pellin, Mariana Loperfido, Cristina Baricordi, Samuel L Wolock, Annita Montepeloso, Olga K Weinberg, Alessandra Biffi, Allon M Klein, Luca Biasco
A comprehensive single cell transcriptional landscape of human hematopoietic progenitors. Nature communications 10 (1) (2019)
Amnon Sharir, Pauline Marangoni, Rapolas Zilionis, Mian Wan, Tomas Wald, Jimmy K Hu, Kyogo Kawaguchi, David Castillo-Azofeifa, Leo Epstein, Kyle I S Harrington, Pierfrancesco Pagella, Thimios Mitsiadis, Christian W Siebel, Allon M Klein, Ophir D Klein
A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage. Nature cell biology 21 (9) (2019)
Camilla Engblom, Christina Pfirschke, Rapolas Zilionis, Janaina Da Silva Martins, Stijn A Bos, Gabriel Courties, Steffen Rickelt, Nicolas Severe, Ninib Baryawno, Julien Faget, Virginia Savova, David Zemmour, Jaclyn Kline, Marie Siwicki, Christopher S Garris, Ferdinando Pucci, Hsin-Wei Liao, Yi-Jang Lin, Andita Newton, Omar K Yaghi, Yoshiko Iwamoto, Benoit Tricot, Gregory R Wojtkiewicz, Matthias Nahrendorf, Virna Cortez-Retamozo, Etienne Meylan, Richard O Hynes, Marie B Demay, Allon M Klein, Miriam A Bredella, David T Scadden, Ralph Weissleder, Mikaël J Pittet
Osteoblasts remotely supply lung tumors with cancer-promoting SiglecFhigh neutrophils. Science (New York, N.Y.) 358 (6367) (2018)
Daniel E Wagner, Caleb Weinreb, Zach M Collins, James A Briggs, Sean G Megason, Allon M Klein
Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo. Science (New York, N.Y.) 360 (6392) (2018)
Daniel E Wagner, Allon M Klein
Genetic screening enters the single-cell era. Nature methods 14 (3) (2018)
Bushra Raj, Daniel E Wagner, Aaron McKenna, Shristi Pandey, Allon M Klein, Jay Shendure, James A Gagnon, Alexander F Schier
Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain. Nature biotechnology 36 (5) (2018)
James A Briggs, Caleb Weinreb, Daniel E Wagner, Sean G Megason, Leonid Peshkin, Marc W Kirschner, Allon M Klein
The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution. Science (New York, N.Y.) 360 (6392) (2018)
Caleb Weinreb, Samuel L Wolock, Betsabeh K Tusi, Merav Socolovsky, Allon M Klein
Fundamental limits on dynamic inference from single-cell snapshots. Proceedings of the National Academy of Sciences of the United States of America 115 (10) (2018)