Darrell N Kotton

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 25

Top Topics

Genome Wide Association

Pluripotent Stem Cells

Respiratory Syndrome Coronavirus

Gene Expression

Top Venues

Science advances

Nature communications

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Luis R Rodriguez, Konstantinos-Dionysios Alysandratos, Jeremy Katzen, Aditi Murthy, Willy Roque Barboza, Yaniv Tomer, Rebeca Acin-Perez, Anton Petcherski, Kasey Minakin, Paige Carson, Swati Iyer, Katrina Chavez, Charlotte H Cooper, Apoorva Babu, Aaron I Weiner, Andrew E Vaughan, Zoltan Arany, Orian S Shirihai, Darrell N Kotton, Michael F Beers
Impaired AMPK Control of Alveolar Epithelial Cell Metabolism Promotes Pulmonary Fibrosis. bioRxiv : the preprint server for biology (2024)
Keith A Gagnon, Jessie Huang, Olivia T Hix, Veronica W Hui, Anne Hinds, Esther A Bullitt, Jeroen Eyckmans, Darrell N Kotton, Christopher S Chen
Multicompartment duct platform to study epithelial-endothelial crosstalk associated with lung adenocarcinoma. APL bioengineering 8 (2) (2024)
Yifei Miao, Cheng Tan, Nicole M Pek, Zhiyun Yu, Kentaro Iwasawa, Daniel O Kechele, Nambirajan Sundaram, Victor Pastrana-Gomez, Keishi Kishimoto, Min-Chi Yang, Cheng Jiang, Jason Tchieu, Jeffrey A Whitsett, Kyle W McCracken, Robbert J Rottier, Darrell N Kotton, Michael A Helmrath, James M Wells, Takanori Takebe, Aaron M Zorn, Ya-Wen Chen, Minzhe Guo, Mingxia Gu
Deciphering Endothelial and Mesenchymal Organ Specification in Vascularized Lung and Intestinal Organoids. bioRxiv : the preprint server for biology (2024)
Keith A Gagnon, Jessie Huang, Olivia T Hix, Veronica W Hui, Anne Hinds, Esther A Bullitt, Jeroen Eyckmans, Darrell N Kotton, Christopher S Chen
Multicompartment duct platform to study epithelial-endothelial crosstalk associated with lung adenocarcinoma. APL bioengineering 8 (2) (2024)
Da-Yuan Chen, Chue Vin Chin, Devin Kenney, Alexander H Tavares, Nazimuddin Khan, Hasahn L Conway, Guan Qun Liu, Manish C Choudhary, Hans P Gertje, Aoife K O'Connell, Scott Adams, Darrell N Kotton, Alexandra Herrmann, Armin Ensser, John H Connor, Markus Bosmann, Jonathan Z Li, Michaela U Gack, Susan C Baker, Robert N Kirchdoerfer, Yachana Kataria, Nicholas A Crossland, Florian Douam, Mohsan Saeed
Spike and nsp6 are key determinants of SARS-CoV-2 Omicron BA.1 attenuation. Nature 615 (7950) (2023)
Da-Yuan Chen, Chue Vin Chin, Devin Kenney, Alexander H Tavares, Nazimuddin Khan, Hasahn L Conway, Guan Qun Liu, Manish C Choudhary, Hans P Gertje, Aoife K O'Connell, Scott Adams, Darrell N Kotton, Alexandra Herrmann, Armin Ensser, John H Connor, Markus Bosmann, Jonathan Z Li, Michaela U Gack, Susan C Baker, Robert N Kirchdoerfer, Yachana Kataria, Nicholas A Crossland, Florian Douam, Mohsan Saeed
Spike and nsp6 are key determinants of SARS-CoV-2 Omicron BA.1 attenuation. Nature (2023)
Andrea B Alber, Hector A Marquez, Liang Ma, George Kwong, Bibek R Thapa, Carlos Villacorta-Martin, Jonathan Lindstrom-Vautrin, Pushpinder Bawa, Feiya Wang, Yongfeng Luo, Laertis Ikonomou, Wei Shi, Darrell N Kotton
Directed differentiation of mouse pluripotent stem cells into functional lung-specific mesenchyme. Nature communications 14 (1) (2023)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Johnathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
Publisher Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature (2023)
Da-Yuan Chen, Chue Vin Chin, Devin Kenney, Alexander H Tavares, Nazimuddin Khan, Hasahn L Conway, Guan Qun Liu, Manish C Choudhary, Hans P Gertje, Aoife K O'Connell, Scott Adams, Darrell N Kotton, Alexandra Herrmann, Armin Ensser, John H Connor, Markus Bosmann, Jonathan Z Li, Michaela U Gack, Susan C Baker, Robert N Kirchdoerfer, Yachana Kataria, Nicholas A Crossland, Florian Douam, Mohsan Saeed
Spike and nsp6 are key determinants of SARS-CoV-2 Omicron BA.1 attenuation. Nature (2023)
Da-Yuan Chen, Chue Vin Chin, Devin Kenney, Alexander H Tavares, Nazimuddin Khan, Hasahn L Conway, Guan Qun Liu, Manish C Choudhary, Hans P Gertje, Aoife K O'Connell, Scott Adams, Darrell N Kotton, Alexandra Herrmann, Armin Ensser, John H Connor, Markus Bosmann, Jonathan Z Li, Michaela U Gack, Susan C Baker, Robert N Kirchdoerfer, Yachana Kataria, Nicholas A Crossland, Florian Douam, Mohsan Saeed
Spike and nsp6 are key determinants of SARS-CoV-2 Omicron BA.1 attenuation. Nature (2023)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Jonathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
Author Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature (2023)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Jonathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
Author Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature (2023)
Da-Yuan Chen, Chue Vin Chin, Devin Kenney, Alexander H Tavares, Nazimuddin Khan, Hasahn L Conway, Guan Qun Liu, Manish C Choudhary, Hans P Gertje, Aoife K O'Connell, Scott Adams, Darrell N Kotton, Alexandra Herrmann, Armin Ensser, John H Connor, Markus Bosmann, Jonathan Z Li, Michaela U Gack, Susan C Baker, Robert N Kirchdoerfer, Yachana Kataria, Nicholas A Crossland, Florian Douam, Mohsan Saeed
Spike and nsp6 are key determinants of SARS-CoV-2 Omicron BA.1 attenuation. Nature 615 (7950) (2023)
Da-Yuan Chen, Chue Vin Chin, Devin Kenney, Alexander H Tavares, Nazimuddin Khan, Hasahn L Conway, Guan Qun Liu, Manish C Choudhary, Hans P Gertje, Aoife K O'Connell, Scott Adams, Darrell N Kotton, Alexandra Herrmann, Armin Ensser, John H Connor, Markus Bosmann, Jonathan Z Li, Michaela U Gack, Susan C Baker, Robert N Kirchdoerfer, Yachana Kataria, Nicholas A Crossland, Florian Douam, Mohsan Saeed
Spike and nsp6 are key determinants of SARS-CoV-2 Omicron BA.1 attenuation. Nature 615 (7950) (2023)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Johnathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
Publisher Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature (2023)
Wai Hoe Ng, Elizabeth K Johnston, Jun Jie Tan, Jacqueline M Bliley, Adam W Feinberg, Donna B Stolz, Ming Sun, Piyumi Wijesekara, Finn Hawkins, Darrell N Kotton, Xi Ren
Recapitulating human cardio-pulmonary co-development using simultaneous multilineage differentiation of pluripotent stem cells. eLife 11 (2022)
Chang-Hyun Gil, Dibyendu Chakraborty, Cristiano P Vieira, Nutan Prasain, Sergio Li Calzi, Seth D Fortmann, Ping Hu, Kimihiko Banno, Mohamed Jamal, Chao Huang, Micheli S Sielski, Yang Lin, Xinxin Huang, Mariana D Dupont, Jason Levi Floyd, Ram Prasad, Ana Leda F Longhini, Trevor J McGill, Hyung-Min Chung, Michael P Murphy, Darrell N Kotton, Michael E Boulton, Mervin C Yoder, Maria B Grant
Specific mesoderm subset derived from human pluripotent stem cells ameliorates microvascular pathology in type 2 diabetic mice. Science advances 8 (9) (2022)
Shou-Wen Wang, Michael J Herriges, Killian Hurley, Darrell N Kotton, Allon M Klein
CoSpar identifies early cell fate biases from single-cell transcriptomic and lineage information. Nature biotechnology 40 (7) (2022)
John Kee, Samuel Thudium, David M Renner, Karl Glastad, Katherine Palozola, Zhen Zhang, Yize Henry Li, Yemin Lan, Joseph Cesare, Andrey Poleshko, Anna A Kiseleva, Rachel Truitt, Fabian L Cardenas-Diaz, Xianwen Zhang, Xuping Xie, Darrell N Kotton, Konstantinos D Alysandratos, Johnathan A Epstein, Pei-Yong Shi, Wenli Yang, Edward Morrisey, Benjamin A Garcia, Shelley L Berger, Susan R Weiss, Erica Korb
SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature 610 (7931) (2022)
James A Torchia, Alexander H Tavares, Laura S Carstensen, Da-Yuan Chen, Jessie Huang, Tianshu Xiao, Sonia Mukherjee, Patrick M Reeves, Hua Tu, Ann E Sluder, Bing Chen, Darrell N Kotton, Richard A Bowen, Mohsan Saeed, Mark C Poznansky, Gordon J Freeman
Optimized ACE2 decoys neutralize antibody-resistant SARS-CoV-2 variants through functional receptor mimicry and treat infection in vivo. Science advances 8 (49) (2022)
Maria C Basil, Fabian L Cardenas-Diaz, Jaymin J Kathiriya, Michael P Morley, Justine Carl, Alexis N Brumwell, Jeremy Katzen, Katherine J Slovik, Apoorva Babu, Su Zhou, Madison M Kremp, Katherine B McCauley, Shanru Li, Joseph D Planer, Shah S Hussain, Xiao-Ming Liu, Rebecca Windmueller, Yun Ying, Kathleen M Stewart, Michelle Oyster, Jason D Christie, Joshua M Diamond, John F Engelhardt, Edward Cantu, Steven M Rowe, Darrell N Kotton, Harold A Chapman, Edward E Morrisey
Human distal airways contain a multipotent secretory cell that can regenerate alveoli. Nature 604 (7904) (2022)
Rhiannon B Werder, Tao Liu, Kristine M Abo, Jonathan Lindstrom-Vautrin, Carlos Villacorta-Martin, Jessie Huang, Anne Hinds, Nathan Boyer, Esther A Bullitt, Marc Liesa, Edwin K Silverman, Darrell N Kotton, Michael H Cho, Xiaobo Zhou, Andrew A Wilson
CRISPR interference interrogation of COPD GWAS genes reveals the functional significance of desmoplakin in iPSC-derived alveolar epithelial cells. Science advances 8 (28) (2022)
Ryan J Geusz, Allen Wang, Dieter K Lam, Nicholas K Vinckier, Konstantinos-Dionysios Alysandratos, David A Roberts, Jinzhao Wang, Samy Kefalopoulou, Araceli Ramirez, Yunjiang Qiu, Joshua Chiou, Kyle J Gaulton, Bing Ren, Darrell N Kotton, Bjoern Gaertner
Sequence logic at enhancers governs a dual mechanism of endodermal organ fate induction by FOXA pioneer factors. Nature communications 12 (1) (2021)
Bingyu Yan, Tilo Freiwald, Daniel Chauss, Luopin Wang, Erin E West, Carmen Mirabelli, Charles J Zhang, Eva-Maria Nichols, Nazish Malik, Richard Gregory, Marcus Bantscheff, Sonja Ghidelli-Disse, Martin Kolev, Tristan Frum, Jason R Spence, Jonathan Z Sexton, Konstantinos D Alysandratos, Darrell N Kotton, Stefania Pittaluga, Jack Bibby, Nathalie Niyonzima, Matthew R Olson, Shahram Kordasti, Didier Portilla, Christiane E Wobus, Arian Dominic John Laurence, Michail S Lionakis, Claudia Kemper, Behdad Afzali, Majid Kazemian
SARS-CoV-2 drives JAK1/2-dependent local complement hyperactivation. Science immunology 6 (58) (2021)
Maria Serra, Konstantinos-Dionysios Alysandratos, Finn Hawkins, Katherine B McCauley, Anjali Jacob, Jinyoung Choi, Ignacio S Caballero, Marall Vedaie, Anita A Kurmann, Laertis Ikonomou, Anthony N Hollenberg, John M Shannon, Darrell N Kotton
Pluripotent stem cell differentiation reveals distinct developmental pathways regulating lung- versus thyroid-lineage specification. Development (Cambridge, England) 144 (21) (2017)